Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq2162 168 2e-36 seq2252 138 3e-27 seq1739 100 9e-16 >seq2162 Length=74254 Score = 168 bits (186), Expect = 2e-36 Identities = 165/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 |||||||| || ||||| ||||| || || || ||||| || || || || ||||| Sbjct 48854 AGAACAAGGTGGAGAGTGGACTCCTTCTGGATGTTATAGTCGCTCAAGGTGCGGCCATCC 48795 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || ||||| ||||| || ||||| |||||||| ||||| || |||||||||||||| || Sbjct 48794 TCCAGTTGCTTTCCGGCGAAGATAAGACGTTGTTGATCTGGGGGAATTCCTTCTTTGTCT 48735 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 ||||| |||||||| || || || || || |||||| |||||| || || || | ||| Sbjct 48734 TGAATCTTAGCTTTCACGTTCTCGATGGAGTCAGATCCTTCAACCTCGAGAGTGATGGTC 48675 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 ||||| || | ||||| || || ||||||||| Sbjct 48674 TTTCCTGTCAACGTTTTCACGAAGATCTGCATT 48642 Score = 154 bits (170), Expect = 4e-32 Identities = 162/212 (76%), Gaps = 1/212 (0%) Strand=Plus/Minus Query 140527 GAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTT 140586 || |||| ||||| || || || ||||| || ||||| ||| || || || ||||| | Sbjct 49080 GACCAAG-TGAAGCGTCGATTCCTTTTGGATGTTATAGTCACTCAAAGTGCGGCCATCCT 49022 Query 140587 CAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCT 140646 ||||||| || ||||||||||| | || |||||||| || || ||||||||||| || | Sbjct 49021 CAAGTTGCTTCCCAGCAAAGATCAATCGCTGCTGATCTGGGGGGATTCCTTCTTTGTCTT 48962 Query 140647 GAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCT 140706 |||| |||||||| || || || ||||||||||| || ||||| | ||| | || | Sbjct 48961 GAATCTTAGCTTTGACGTTTTCGATCGAATCAGAGCCCTCGACTTCCAATGTGATCGTTT 48902 Query 140707 TTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 | || || || || || || |||||||||||| Sbjct 48901 TGCCCGTGAGGGTCTTCACGAAAATCTGCATT 48870 Score = 149 bits (164), Expect = 2e-30 Identities = 150/195 (77%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 140544 GACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCA 140603 ||||| || || || || || ||| || || || |||||||| | || ||||| || Sbjct 49651 GACTCCTTCTGGATGTTGTAGTCACTCAAAGTGCGGCCATCTTCCAACTGCTTTCCGGCG 49592 Query 140604 AAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACA 140663 ||||| |||||||| ||||| || ||||||||||| || ||||| || ||||| || ||| Sbjct 49591 AAGATAAGACGTTGTTGATCTGGGGGAATTCCTTCCTTGTCCTGGATCTTAGCCTTCACA 49532 Query 140664 TTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTT 140723 || || |||||||| ||| |||||| || || || | ||||||||||| | ||||| Sbjct 49531 TTCTCGATCGAATCGGATCCTTCAACCTCGAGAGTGATGGTCTTTCCGGTCAACGTTTTC 49472 Query 140724 ACAAAAATCTGCATT 140738 || || ||||||||| Sbjct 49471 ACGAAGATCTGCATT 49457 Score = 141 bits (156), Expect = 3e-28 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| || || || | || |||||||| || ||||| ||||| || || || || || || Sbjct 49329 CATTCCTCCTCGAAGTCGGAGAACAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTC 49270 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | || || || |||||||| | || || ||||||||||| || || ||||| || || Sbjct 49269 ACTCAAAGTGCGGCCATCTTCCAACTGCTTGCCAGCAAAGATCAGCCGCTGCTGGTCGGG 49210 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||||||||| || || || || |||||||| || || ||||| | ||||| || Sbjct 49209 AGGAATTCCTTCCTTGTCTTGGATCTTAGCTTTCACGTTTTCAATGGTGTCAGAACCCTC 49150 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| || | || || || || || || || ||||| |||||||| Sbjct 49149 GACCTCAAGAGTGATCGTTTTGCCTGTCAGAGTCTTGACAAAGATCTGCAT 49099 >seq2252 Length=1130325 Score = 138 bits (152), Expect = 3e-27 Identities = 172/236 (73%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| ||| ||||| || | | ||||| ||||| || ||||| ||||| || || || | Sbjct 562695 TTTGCATTCCACCGCGAAGGCGGAGAACCAGATGGAGCGTAGATTCTTTCTGGATGTTGT 562754 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || | || | ||||| || || || ||||| || ||||| | || ||||||| Sbjct 562755 AGTCGGACAGGGTCCTTCCATCCTCGAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGAT 562814 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || || ||||| |||||||| ||||| || || || || || ||||| | || || Sbjct 562815 CTGGGGGGATTCCCTCTTTATCTTGAATCTTTGCCTTGACGTTTTCAATGGTGTCCGAAC 562874 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 ||||||||||| || | ||||||||||| | || || || ||||| |||||| Sbjct 562875 CCTCAACTTCAAGAGTGATGGTCTTTCCGGTCAAAGTCTTCACGAAAATTTGCATT 562930 Score = 136 bits (150), Expect = 1e-26 Identities = 171/235 (73%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | || || |||||||| || || || || || || || | Sbjct 563151 TTTGCATACCACCACGGAGACGAAGGACGAGATGAAGGGTCGATTCCTTCTGGATGTTGT 563210 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || || || || |||||||| | || ||||| || ||||| | || ||||| | Sbjct 563211 AGTCGGACAAAGTGCGGCCATCTTCCAACTGCTTTCCGGCGAAGATCAAGCGCTGCTGGT 563270 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || ||||||||||||||||| || || || || || || || || || | ||||||| Sbjct 563271 CTGGGGGAATTCCTTCTTTATCTTGGATCTTGGCCTTCACGTTTTCGATAGTATCAGATC 563330 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || | ||||||||||| | || || || || || ||||| Sbjct 563331 CCTCGACCTCCAGGGTGATGGTCTTTCCGGTCAAAGTCTTCACGAAGATTTGCAT 563385 Score = 127 bits (140), Expect = 6e-24 Identities = 169/235 (72%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| ||| ||||| || | | ||||| ||||| || ||||| || || || || || | Sbjct 563504 TTTGCATTCCACCGCGAAGGCGGAGAACCAGATGGAGCGTAGATTCCTTCTGGATGTTGT 563563 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || || || || ||||| || || || ||||| || ||||| || || ||||| | Sbjct 563564 AGTCGGACAAAGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGT 563623 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || |||||||| || || || || || ||||| || || || || || | ||||| | Sbjct 563624 CTGGGGGAATTCCCTCCTTGTCTTGGATCTTAGCCTTGACGTTCTCGATGGTGTCAGAGG 563683 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| || || || || | ||||||||||| | || || || || || ||||| Sbjct 563684 CTTCGACCTCGAGGGTGATGGTCTTTCCGGTCAAAGTCTTCACGAAGATTTGCAT 563738 Score = 114 bits (126), Expect = 4e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 140511 CCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGAT 140570 |||||||| | | || || || ||||| || || || || || || || || || || Sbjct 562200 CCACCACGGAGGCGGAGGACGAGGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAC 562259 Query 140571 AATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGA 140630 || || || ||||| || || || ||||| || ||||| || || ||||| || || || Sbjct 562260 AAAGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCTGGGGGG 562319 Query 140631 ATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACT 140690 || || || |||||||| || || || || || || ||||| | || || || || Sbjct 562320 ATGCCCTCCTTATCCTGGATCTTTGCCTTGACGTTCTCAATGGTGTCCGAACCCTCGACC 562379 Query 140691 TCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 || || || | ||||||||||| | ||||| || || ||||||||| Sbjct 562380 TCCAGGGTGATGGTCTTTCCGGTCAAAGTTTTCACGAAGATCTGCATT 562427 Score = 93.3 bits (102), Expect = 1e-13 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654 || || |||||||| ||||||||||| || || |||||||||||||| ||||| || || Sbjct 562559 TTACCGGCAAAGATGAGACGTTGCTGGTCTGGGGGAATTCCTTCTTTGTCCTGGATCTTG 562618 Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714 || || ||||| || || | || || ||| || || || || | ||||| || || Sbjct 562619 GCCTTCACATTCTCGATGGTGTCGGAGCCTTCGACCTCGAGGGTGATGGTCTTGCCAGTG 562678 Query 140715 AGTGTTTTTACAAAAATCTGCATT 140738 || || || || || || |||||| Sbjct 562679 AGGGTCTTGACGAAGATTTGCATT 562702 >seq1739 Length=92152 Score = 100 bits (110), Expect = 9e-16 Identities = 110/144 (76%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654 || || |||||||| || ||||||||||| ||||| || ||||| || ||||| || || Sbjct 76770 TTACCGGCAAAGATGAGGCGTTGCTGATCTGGAGGGATGCCTTCCTTGTCCTGGATCTTC 76711 Query 140655 GCTTTTACATTATCAATCGAATCAGATGG-TTCAACTTCAAGTGTAACTGTCTTTCCGGT 140713 || || ||||| || |||| || | ||| ||| || || || || | ||||| ||||| Sbjct 76710 GCCTTGACATTCTCGATCGTGTC-GCTGGCTTCGACCTCCAGGGTGATGGTCTTGCCGGT 76652 Query 140714 TAGTGTTTTTACAAAAATCTGCAT 140737 || || || || ||||||||||| Sbjct 76651 GAGAGTCTTGACGAAAATCTGCAT 76628 Score = 95.1 bits (104), Expect = 4e-14 Identities = 109/144 (76%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654 || || |||||||| || ||||||||||| ||||| || ||||| || ||||| || || Sbjct 76220 TTACCGGCAAAGATGAGCCGTTGCTGATCTGGAGGGATGCCTTCCTTGTCCTGGATCTTC 76161 Query 140655 GCTTTTACATTATCAATCGAATCAGATGG-TTCAACTTCAAGTGTAACTGTCTTTCCGGT 140713 || || ||||| || |||| || | ||| ||| || || || || | ||||| ||||| Sbjct 76160 GCCTTGACATTCTCGATCGTGTC-GCTGGCTTCGACCTCCAGGGTGATGGTCTTGCCGGT 76102 Query 140714 TAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || |||||||| Sbjct 76101 GAGCGTCTTCACGAAGATCTGCAT 76078 Score = 91.5 bits (100), Expect = 4e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654 || || |||||||| ||||||||||| || ||||| || ||||| || ||||| ||||| Sbjct 75946 TTACCGGCAAAGATCAGACGTTGCTGGTCTGGAGGGATGCCTTCCTTGTCCTGGATTTTG 75887 Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714 || || || || ||||| | || || || || || || || | ||||| ||||| Sbjct 75886 GCCTTGACGTTCTCAATGGTGTCGCTTGCCTCGACCTCCAGAGTGATCGTCTTGCCGGTG 75827 Query 140715 AGTGTTTTTACAAAAATCTGCAT 140737 || || || || || |||||||| Sbjct 75826 AGCGTCTTCACGAAGATCTGCAT 75804 Score = 91.5 bits (100), Expect = 4e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654 || || |||||||| || || || || ||||||||||| |||||||| || ||||| || Sbjct 76496 TTACCGGCAAAGATCAGGCGCTGTTGGTCAGGAGGAATGCCTTCTTTGTCTTGAATCTTC 76437 Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714 || || || || ||||| | ||| | ||| || || || || | ||||| ||||| Sbjct 76436 GCCTTGACGTTTTCAATTGTGTCACTGGCTTCGACCTCCAGGGTGATGGTCTTGCCGGTG 76377 Query 140715 AGTGTTTTTACAAAAATCTGCAT 140737 || || || || || |||||||| Sbjct 76376 AGCGTCTTCACGAAGATCTGCAT 76354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515198797739792