Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq1889 223 4e-53 seq4 116 4e-21 >seq1889 Length=309471 Score = 223 bits (246), Expect = 4e-53 Identities = 1072/1681 (64%), Gaps = 154/1681 (9%) Strand=Plus/Plus Query 78265 CTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCGATGTACGCACCGCGGTCG 78324 ||||| || ||||| |||||| || ||||| |||||||| ||||| || ||||||||| Sbjct 13770 CTCGGCTTGGCCATGTGGATGTTCAGGGACTGCGACTGGTCTATGTAGGCGCCGCGGTCG 13829 Query 78325 GCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCAGATGGTCCGGTAAATGGCCTTC 78384 |||||||| || |||| ||| || | |||||||||| ||| ||| | | | | | Sbjct 13830 GCCGCCATCTCCATGATGTCCTTCTGAGAGATCTCCCAGACCGTCTTGTACAAGTCTTGC 13889 Query 78385 AGCTCTTCCTGGATGTCCAGCGCT----TGTACGCTCCCACCGGCTCGC-ACAATTTCAT 78439 || || | | ||||| ||| | || | | ||||| |||| | || || | Sbjct 13890 AGATCCTTGGGAATGTCG-GCGATGCCCTGGATGGATCCACCCT-TCGCGATGATCTCGT 13947 Query 78440 TCTTAATTTGAGGGTTCCAGCGATTGATCTTCTGAAGATCCCGGACCAGGTGCCGGTTAA 78499 |||| | || || ||| | || | || | ||| || || ||| |||| | Sbjct 13948 TCTTGAGTTTGTCGTCCCACAGGTTCAGCTCAACCAAGTCCTTGAGCAAGTGAGGGTTGA 14007 Query 78500 TCATGACGAACTCGCCGGCCAGGGTCCGGCGCAGGTAGATGTTGGTCGTGTACGGCTCGA 78559 || ||| ||||||| ||| || || ||||||||||| ||||||||||||| Sbjct 14008 CGATCTGGAAGTCGCCGGAAAGGACACGACGGCTGTAGATGTTGGAGGTGTACGGCTCGA 14067 Query 78560 AAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGAGGCGGTCGGCATGGGTGCGACCAGTA 78619 | ||||||||| || | ||| || || || || || || ||||| || || ||||| | Sbjct 14068 TCGACTCGTTGTTTCCGAGGATTTGAGCAGTGGACGCCGTGGGCATCGGAGCAACCAGAA 14127 Query 78620 GAGAATTCCGAAGACCATGCGTCTTGATCTCGACCTT-----TAGGCC-GTCCCAAAATT 78673 | || || | || ||| | ||||| |||| ||| || ||| || | Sbjct 14128 GGCTGTTGCGGACTCCGTGCTTGGCGATCTTCTCCTTCAAAGTAGCCCAGTCGCACTGGT 14187 Query 78674 CATTCG------------------CCGCGATCCCCCACATGTCCGGTTGAAGGATACCCT 78715 | | | || || | |||||| || ||| || | || Sbjct 14188 CCGTGGGAACCACGGGCTTGCCGTCCTCGGTGGTCCACATCTCGTATTGGAGCACGCCG- 14246 Query 78716 CGGACG-CCGGCGACCCCTTGAACGTCTCGTAAGATCCCTCCTCCTTGGCGAGTTCGCAT 78774 ||| | |||| || || | | | || || || | ||| | | || || || ||||| Sbjct 14247 CGGCTGACCGGAGAGCCTTCGTAGGTTTCATAGGGTCCGTACAGCTCCGCCAGCTCGCAG 14306 Query 78775 GA---CTCGAGCAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTTGTTGAGCTCGCGC 78831 || |||||| || |||||||| | | |||||||| | |||||| | ||||| Sbjct 14307 GAAGACTCGAG---GGAGGCGTGGTAGATGGTTTCGAAGATTCGCTTGTTCATGTCGCGG 14363 Query 78832 GCCTT-GGTCTCGTCGAACGAAAGGCCGAGCATCATGAAGACATCGGCCAGGCCCTGGAC 78890 || | || || || ||| | | || | || ||| ||| | || || || |||||||| Sbjct 14364 GCTTCAGGACTGGT-GAAGGGGAAGCGCATCAGCATAAAGGCGTCCGCGAGTCCCTGGAC 14422 Query 78891 GCCGATAGCGATCGGTCGGTGGCGCATGTTGCTC-TTTCGGGCCGCCTCGGTCGGG-TAA 78948 ||||| | || || ||||| ||| ||||| |||||| | | | | || ||| Sbjct 14423 TCCGATTCCAATGGGACGGTGCCGCTTGTTGGAGGTTTCGG--CTTCAGGAACAGGATAA 14480 Query 78949 AAGTTCCGATCGATGACGCGGTTCAGGTTACGCGTGACGACCCGAGTCACCTCGTACAAT 79008 |||| | ||||||| ||| ||||| || ||||||||| ||| | | ||| | Sbjct 14481 TAGTTGCCGTCGATGATCTTGTTGAGGTTGCGAGTGACGACCTTAGTGATCGCGTGGAGC 14540 Query 79009 TTGGCGAAATCAAAATGATT-TCCT--TTGATGAAAGTCGGT---AGGCACAGCGATGCC 79062 || || | || || || |||| |||| ||| ||||| | ||| | ||| || Sbjct 14541 TTCTCGTAGTCGAAGGTCTTGTCCTCCTTGACGAA--TCGGTTCAACGCA-ATCGAAGCT 14597 Query 79063 AGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCACAAATTA 79122 | |||||||||||| ||||| || || || || ||| || ||||||| || Sbjct 14598 AAGTTGCACACGGCGACTTCGTCGGGAGACGAGTACTGGACGATCTCAGTGCACAGGTTG 14657 Query 79123 GACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCCTTGTAG 79182 || ||||||| || || | ||||| |||||| ||| ||| ||||||||||||||| Sbjct 14658 GAGCACTTGATCGTTCCCAGGTTCTGCTGGTTCGACTTGCGGTTGCAGGCGTCCTTGTAG 14717 Query 79183 CACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGTCCCAGATGTCCCGG 79242 |||||| || || || || || | ||| ||| | | ||||||| | ||| Sbjct 14718 AGCATGTAAGGAGTTCCAGTTTCGATCTGGGAGGTGACGATCTCTTCCCAGAGTGCACGG 14777 Query 79243 GCCCGGACAACCTTCTTGTACCGACCCTG-TGCGACGTACGT--------CCGGTA---- 79289 ||| |||| |||||| | || || | ||| ||||| | ||| || Sbjct 14778 GCCTTGACACGCTTCTTAAAACGTCCTTCCTGCT-CGTACCTTAAATAAGCCGATAATTC 14836 Query 79290 -------CA--------------ACTCGTTGAA-AGCCTCCCCA-----------TAGAC 79316 || ||| | || | ||| || | | || Sbjct 14837 TAGAAGCCATGAAAGAAATACTTACTGGGTGTAGAGCTTCTCGAACTCTTTGCCGTAAGT 14896 Query 79317 ATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCAGGTGCCAGTCCTCGTCCTTCTCAAC 79376 || || || || || |||| || |||||||||| ||| || | ||||| || || Sbjct 14897 GTCAGGGAGTCCGGGACACTTATGAGGGCACATCAAAGACCACTCTTTGTCCTCCTTGAC 14956 Query 79377 CTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGT-GAAGAGGTCGCGGCAACGCATCT 79435 |||||||||||||| |||||||||||| |||| ||||||||||||| ||| | Sbjct 14957 ACGTTCCATGAAGAGGTCAGGGATCCACAGG-CCGTAGAAGAGGTCGCGGGCGCGCTCTT 15015 Query 79436 CCTCGTCGCCC-TGGTTC-----AGACGCAG---CTCGAGAAAGTC--CATG--ATG--T 79480 | ||| || || ||| || ||||| ||||| || ||| | || ||| | Sbjct 15016 CTTCGGATCCAGTGTTTCGCTTGAGGCGCAGGAACTCGAAAATGTCGGCGTGCCATGGCT 15075 Query 79481 CGGCGT-----GCCACGGCTCCAG--------------------ATAGATGGCGAAC-GA 79514 || ||| || | ||||| | |||||||| || | || Sbjct 15076 CGACGTAGATGGCAAACGCTCCGGGGCGCTAAAAAGGTATGCTTATAGATGGTGAGCTGA 15135 Query 79515 ACCCTTGCG----CTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTC 79570 | | | | |||| ||| || || | |||||| || |||||||||||| | |||| Sbjct 15136 AACATGGACATACCTTGTTGCCTCCTTGATCGACGTAGCGAGCCGTGTTGTTGTACACTC 15195 Query 79571 GGAGCATGGGCACGATGCCGTCGGCGACGCCGTTCGT-CCCGTTGATTCGTG-TACCGCT 79628 |||||||||| | | ||||| || | |||||| || |||| | || || | || Sbjct 15196 GGAGCATGGGGATCAGGCCGTTGGAGGTGCCGTTGGTTCCCGC--AATCATGGTTCCCGA 15253 Query 79629 CGCCCGAATGTTC-GAGCAGTGGATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGC 79687 || |||||| | || || || ||||||||| |||| | |||||||||| |||| Sbjct 15254 GGCGCGAATGCAGTGCGC-GTTGAGTCCGATGCCTCCGGCCGACTTGGAGATCAAGGCGC 15312 Query 79688 ACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGC 79747 ||| | ||| |||| | ||||||| ||||| ||||| || | ||| | || ||||||| Sbjct 15313 ACTGCCAGAGGGTCTTGAAGATGCCGTCGATGGAGTCATCGTGCATTGTGAGAAGGAAGC 15372 Query 79748 AGCTCGACATCTGTGGGTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGA 79807 || |||||| || ||| || ||||||||||||||||| |||| ||||| |||| Sbjct 15373 AGGAACTCATCTGGGGCTTGCAGGTTCCGGCGTTGAAGAGGGTGGGCGATGCGTGGGTGA 15432 Query 79808 A 79808 | Sbjct 15433 A 15433 Score = 201 bits (222), Expect = 1e-46 Identities = 1058/1683 (63%), Gaps = 156/1683 (9%) Strand=Plus/Minus Query 19196 TTCACGCACGCGACGCCGACCCTTTTCAACGCCGGTACGAACAACCCGCAGATGTCGAGC 19255 ||||| ||||| |||| ||||| ||||||||||| || ||| || |||||| | Sbjct 15433 TTCACCCACGCATCGCCCACCCTCTTCAACGCCGGAACCTGCAAGCCCCAGATGAGTTCC 15374 Query 19256 TGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATCTACGAGACGCTCAAGGAG 19315 || ||||| | | ||| | |||||| ||| || ||||||| | |||| ||| | || Sbjct 15373 TGCTTCCTTCTCACAATGCACGATGACTCCATCGACGGCATCTTCAAGACCCTCTGGCAG 15314 Query 19316 TGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGGATCCACT-GCTC-GAATATCCGGT 19373 ||||| |||||||||| | |||| || ||||| || || || | | || || | Sbjct 15313 TGCGCCTTGATCTCCAAGTCGGCCGGAGGCATCGGACTCAACGCGCACTGCAT-TCGCGC 15255 Query 19374 CGAGTGGTACACGAATCAATGGGACGAACGGAGTAGCCGACGGTATCGTCCCAATGCTCC 19433 | | | || || | || || ||||| || |||| | |||| ||||||| Sbjct 15254 CTCGGGAACCATGATTGCG-GGAACCAACGGCACCTCCAACGGCCTGATCCCCATGCTCC 15196 Query 19434 GCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGGGGGCGGCAA-------------- 19479 | || | |||||||||||| | |||||| | || || ||| ||| Sbjct 15195 GAGTGTACAACAACACGGCTCGCTACGTCGATCAAGGAGGCAACAAGGTATGTCCATGTT 15136 Query 19480 ----------------ACGCA---------AGGGCTC------GTTCGCCATCTACCTCG 19508 | ||| || || | ||| ||||||||| ||| Sbjct 15135 TCAGCTCACCATCTATAAGCATACCTTTTTAGCGCCCCGGAGCGTTTGCCATCTACGTCG 15076 Query 19509 AGCCATGGCACGCGGACGTCATGGATTTCCTCGAACTGCGCCT-----GAACCAG-GGTG 19562 ||||||||||||| ||| | | || ||||| |||||| ||| || || Sbjct 15075 AGCCATGGCACGCCGACATTTTCGAGTTCCT------GCGCCTCAAGCGAAACACTGGAT 15022 Query 19563 ACGAGGAGATGCGCTGTCGCGACCTCTTC-ACGGCCTTGTGGATTCCGGACCTATTCATG 19621 ||| || |||| |||||||||||| ||||||| |||||| || ||||| |||||| Sbjct 15021 CCGAAGAAGAGCGCGCCCGCGACCTCTTCTACGGCCT-GTGGATCCCTGACCTCTTCATG 14963 Query 19622 GAGAAGGTTGAGAAGGACGAAGAATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCTA 19681 || || || ||||| |||| ||| |||||||||| || | || || || || Sbjct 14962 GAACGTGTCAAGGAGGACAAAGAGTGGTCTTTGATGTGCCCTCATAAGTGTCCCGGACTC 14903 Query 19682 CCCGACGTCTACGGCGAGGCGTTCAATGAGTTGTAC------------------------ 19717 || ||| |||||| | | |||| | || | ||| Sbjct 14902 CCTGACACTTACGGCAAAGAGTTCGAGAAGCTCTACACCCAGTAAGTATTTCTTTCATGG 14843 Query 19718 -------------CGG---ACTTACG-TA-GCCCAGG---GCCGGTTCAAGAAGGTGGTC 19756 ||| | ||| | || | |||| | || || |||||| ||| Sbjct 14842 CTTCTAGAATTATCGGCTTATTTAAGGTACGAGCAGGAAGGACGTTTTAAGAAGCGTGTC 14783 Query 19757 CGGGCCCGGGACGTCTGGGACCGCGTCCTCAAAAGCCAGGTCGAGACCGGCACACCGTAC 19816 |||||| | ||||||| || ||| |||| |||| || || || || ||| Sbjct 14782 AAGGCCCGTGCACTCTGGGAAGAGATCGTCACCTCCCAGATCGAAACTGGAACTCCTTAC 14723 Query 19817 ATGTGCTACAAGGACGCCGCGAACGCCAAGTCAAATCAGAAGAACATCGGCGCGATCAAG 19876 ||| ||||||||||||| ||| |||||| || ||| ||||| | || |||||||| Sbjct 14722 ATGCTCTACAAGGACGCCTGCAACCGCAAGTCGAACCAGCAGAACCTGGGAACGATCAAG 14663 Query 19877 TCGTCCAACCTGTGTACTGAAATCATGGAGGTTTCCAAGCCGGACGAGACTGCCGTGTGT 19936 | ||||||||||| ||||| ||| | || || || ||||| |||||||| Sbjct 14662 TGCTCCAACCTGTGCACTGAGATCGTCCAGTACTCGTCTCCCGACGAAGTCGCCGTGTGC 14603 Query 19937 AATCTGGCGTCCCTGTGCCTG---CCGACTTTCGTCAAGGCCTCCT---CCTTCGACTTT 19990 || | || || | ||| | |||| |||||||||| | ||||||||| Sbjct 14602 AACTTAGCTTCGAT-TGCGTTGAACCGA--TTCGTCAAGGAGGACAAGACCTTCGACTAC 14546 Query 19991 GCCAAATTGTACGAGGTGACCCGGGTCGTCACGCGTAATCTGAATCGCGTCATCGATCGG 20050 | || | ||| | | || ||||||||| || || || || ||||||| | Sbjct 14545 GAGAAGCTCCACGCGATCACTAAGGTCGTCACTCGCAACCTCAACAAGATCATCGACGGC 14486 Query 20051 AACTTTTACCCGA---CCGAGGCGGCGCGCAAG-TCGAATATGCGCCACCGGCCGATCGC 20106 |||| ||| || | || || || || || || | ||| ||||| || || | Sbjct 14485 AACTATTATCCTGTTCCTGAAGC----CGAAACCTCCAACAAGCGGCACCGTCCCATTGG 14430 Query 20107 GATCGGCGTCCAGGGCCTGGCCGACGTTTTCATGATGCTCGGCCTCTCATTCGACGATCC 20166 ||||| |||||||| || || |||| || ||| || | || || | ||| | ||| Sbjct 14429 AATCGGAGTCCAGGGACTCGCGGACGCCTTTATGCTGATGCGCTTCCCCTTCACCAGTCC 14370 Query 20167 CAAGGCGCGCGAGCTCAACAAGGGCATCTTCGAGGCCGTGTACCACGCGGCCCTCCTGGA 20226 | || ||||| | |||||| | |||||||| || | |||||||| ||||| | Sbjct 14369 TGAAGCCCGCGACATGAACAAGCGAATCTTCGAAACCATCTACCACGCCTCCCTCGAGTC 14310 Query 20227 ATCGTGCGAACTCGCCAAAGAGGACGGCCCGTACGAGACGTTCAAGGGGTCGCCCG-CGT 20285 || ||||| || || | | |||| || || || || | | | || || || | | Sbjct 14309 TTCCTGCGAGCTGGCGGAGCTGTACGGACCCTATGAAACCTACGAAGGCTCTCCGGTCAG 14250 Query 20286 CCGAGGGTATCCTCCAGCCGGACATGTGGGGCGTC----ACTG--AGAATGAGTTTT--- 20336 ||| || | ||||| || |||||| | | || | || | | || Sbjct 14249 CCGCGGCG-TGCTCCAATACGAGATGTGGACCACCGAGGACGGCAAGCCCGTGGTTCCCA 14191 Query 20337 -GGA-----GCGCCC---------TCAAGGTTGAGATCAAGACCCACGGGCTTCGCAACT 20381 ||| ||| | | |||| ||||| | ||||| | |||||| Sbjct 14190 CGGACCAGTGCGACTGGGCTACTTTGAAGGAGAAGATCGCCAAGCACGGAGTCCGCAACA 14131 Query 20382 CGTTGCTCGTCGCGCCCATGCCGACCGCCTCGACCGCCCAGATCATGGGGAACAACGAGG 20441 | || || || || ||||| || || || || || || ||| | || ||||||||| Sbjct 14130 GCCTTCTGGTTGCTCCGATGCCCACGGCGTCCACTGCTCAAATCCTCGGAAACAACGAGT 14071 Query 20442 CTTTCGAGCCGTACACGACCAACATCTACTTGCGTCGTACACTGGCCGGTGAGTTCGTCA 20501 | ||||||||||||| ||||||||||| |||||| || |||| || ||| | Sbjct 14070 CGATCGAGCCGTACACCTCCAACATCTACAGCCGTCGTGTCCTTTCCGGCGACTTCCAGA 14011 Query 20502 TGGTAAACAAGCACCTGGTCCGCGACTTGCAGAAGATCGATATGTGGTCGCCCAAAATTA 20561 | || ||| ||| || || |||||| || | | ||||| |||| | | Sbjct 14010 TCGTCAACCCTCACTTGCTCAAGGACTTGGTTGAGCTGAACCTGTGGGACGACAAACTCA 13951 Query 20562 AGAATGAAATTGTCCGAGCCGGCGGGAGCG-TCCAGG-CATTG--GATATCCCCCAGAAC 20617 |||| || || || | | || ||| | |||||| ||| | || || ||| || | Sbjct 13950 AGAACGAGATCATC-GCGAAGGGTGGATCCATCCAGGGCATCGCCGACATTCCCAAGGAT 13892 Query 20618 CTCAAGGACATTTACAGGACCGTATGGGAAATCCCACAGAAGAGCATCATCGACATGGCG 20677 || | ||| | |||| ||| || ||||| ||| | |||||| |||||| || |||||| Sbjct 13891 CTGCAAGACTTGTACAAGACGGTCTGGGAGATCTCTCAGAAGGACATCATGGAGATGGCG 13832 Query 20678 GCCGATCGCGGCGCCTACATCGACCAGTCCCAGTCGCTCAATGTCTTCATGGAGAATCCG 20737 ||||| |||||||||||||| |||||||| ||||| || || || ||||| || ||| Sbjct 13831 GCCGACCGCGGCGCCTACATAGACCAGTCGCAGTCCCTGAACATCCACATGGCCAAGCCG 13772 Query 20738 AGC 20740 ||| Sbjct 13771 AGC 13769 >seq4 Length=195412 Score = 116 bits (128), Expect = 4e-21 Identities = 103/129 (80%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 60002 CGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGG 60061 ||| |||||||||||||||||||| |||||| ||| || || |||||||| ||||| || Sbjct 71247 CGTTGAAGGAATCTTCTTCTCTGGGTCGTTCGCTGCCATCTTTTGGCTCAAGAAGCGAGG 71306 Query 60062 CCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCATCA 60121 ||||||||| || || | | | |||||| ||||||||||| || || ||||| || | Sbjct 71307 CCTCATGCCTGGACTCACTCACAGCAACGAACTGATTTCCCGCGATGAAGGCCTTCACCG 71366 Query 60122 GGAGTTTGC 60130 || ||||| Sbjct 71367 TGACTTTGC 71375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548505162812160