Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1889 122 1e-22 seq1438 89.7 6e-13 seq2252 82.4 8e-11 >seq1889 Length=309471 Score = 122 bits (134), Expect = 1e-22 Identities = 243/358 (68%), Gaps = 3/358 (1%) Strand=Plus/Minus Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543 |||||| ||| || || || || ||||| || ||||| || ||||| ||| | || ||| Sbjct 14137 CGCAACAGCCTTCTGGTTGCTCCGATGCCCACGGCGTCCACTGCTCAAATCCTCGGAAAC 14078 Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAG 55603 |||||| || ||||||||||||| ||||||||||| || || ||| | || || Sbjct 14077 AACGAGTCGATCGAGCCGTACACCTCCAACATCTACAGCCGTCGTGTCCTTTCCGGCGAC 14018 Query 55604 TTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCG 55663 || || ||||| ||| | |||||||| || || | ||| |||| || Sbjct 14017 TTCCAGATCGTCAACCCTCACTTGCTCAAGGACTTGGTTGAGCTGAACCTGTGGGACGAC 13958 Query 55664 CAGATCAAGACGGATATTGTGCGGAACGGGGGGTCCGTCCA--GAATC-TGGAGATTCCT 55720 | |||||| || || | ||| || || ||| |||| | ||| || ||||| Sbjct 13957 AAACTCAAGAACGAGATCATCGCGAAGGGTGGATCCATCCAGGGCATCGCCGACATTCCC 13898 Query 55721 CTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGAC 55780 | ||| | || | ||| |||||| |||||||| | |||||| | || || Sbjct 13897 AAGGATCTGCAAGACTTGTACAAGACGGTCTGGGAGATCTCTCAGAAGGACATCATGGAG 13838 Query 55781 ATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGG 55838 ||| || || || || || ||||| |||||||| ||||| ||||||||| ||||| Sbjct 13837 ATGGCGGCCGACCGCGGCGCCTACATAGACCAGTCGCAGTCCCTGAACATCCACATGG 13780 Score = 116 bits (128), Expect = 4e-21 Identities = 348/537 (65%), Gaps = 55/537 (10%) Strand=Plus/Minus Query 53273 TTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGC 53332 || || ||||| |||| ||||| |||||||| || || | || |||||| | Sbjct 15433 TTCACCCACGCATCGCCCACCCTCTTCAACGCCGGAACCTGCAAGCCCCAGATGAGTTCC 15374 Query 53333 TGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAG 53392 |||||||| | | ||| | |||||||| ||||||||||||| | |||| ||| | || Sbjct 15373 TGCTTCCTTCTCACAATGCACGATGACTCCATCGACGGCATCTTCAAGACCCTCTGGCAG 15314 Query 53393 TGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCACT-GCTCGAACGTCCGTGC 53451 || ||| |||||||||| | | || || ||||| || || || | | | || || Sbjct 15313 TGCGCCTTGATCTCCAAGTCGGCCGGAGGCATCGGACTCAACGCGCACTG-CATTCGCGC 15255 Query 53452 GAACGGCACACCA--ATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTC 53509 ||| | |||| || ||| || |||||| | || | || | | || |||||| Sbjct 15254 CT-CGGGA-ACCATGATTGCGGGAACCAACGGCACCTCCAACGGCCTGATCCCCATGCTC 15197 Query 53510 CGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGT-----GGGA--------- 53555 || || | |||||||||||| || |||||| | || || || || | Sbjct 15196 CGAGTGTACAACAACACGGCTCGCTACGTCGATCAAGGAGGCAACAAGGTATGTCCATGT 15137 Query 53556 -------------------------------AGCGCAAGGGGTCGTTCGCCATCTACCTC 53584 ||||| || |||| ||||||||| || Sbjct 15136 TTCAGCTCACCATCTATAAGCATACCTTTTTAGCGCCCCGGAGCGTTTGCCATCTACGTC 15077 Query 53585 GAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAG-GGTGACGA 53643 ||||| ||||||||||||||| | ||||| || | || | ||| || || ||| Sbjct 15076 GAGCCATGGCACGCCGACATTTTCGAGTTCCT-GCGCCTCAAGCGAAACACTGGATCCGA 15018 Query 53644 AGAGATGCGCTGCCGTGACCTGTT-TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAA 53702 ||| |||| ||| ||||| || ||| || |||||||| || |||||||||||| || Sbjct 15017 AGAAGAGCGCGCCCGCGACCTCTTCTACGGC-CTGTGGATCCCTGACCTCTTCATGGAAC 14959 Query 53703 AGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCC 53759 || || ||||| | ||||||| |||||||||| | |||| ||||| |||| Sbjct 14958 GTGTCAAGGAGGACAAAGAGTGGTCTTTGATGTGCCCTCATAAGTGTCCCGGACTCC 14902 >seq1438 Length=126490 Score = 89.7 bits (98), Expect = 6e-13 Identities = 175/254 (69%), Gaps = 6/254 (2%) Strand=Plus/Plus Query 152049 GGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTT 152108 |||||| |||| || || ||||||| || ||||| ||| ||||| |||||||| Sbjct 32315 GGCCGCGTCCTCTCCGCCCTGATGCCGCGTCCCGAACTGGCCAATGGGCTGCAGGAGGTT 32374 Query 152109 GAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGC 152168 |||||||||| ||||| || | ||| || | || |||||| | ||| | Sbjct 32375 CAGGTTGTTGGACCCCACAAAGTCCTGCGCAAGGCGGACGATCGTGTTCACCAGCGATTC 32434 Query 152169 TTCACCGTGGTGATACGCCGTCTGCTCCGCGAT--GTATCCCGCCAACTGCGCCACCTTC 152226 ||| |||||||||||||| | | || ||||| | ||| || ||||| ||| || Sbjct 32435 TTCGCCGTGGTGATACGCGG--AGATCTGCGATACGGCTCCGGCTAACTGGTTCACTTTA 32492 Query 152227 ATGTC-CGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTT 152285 || || | || | || | ||||| ||| ||| ||| ||||| ||||| ||||| Sbjct 32493 ATTTCGCTTCCTTCGG-GCCGCTTGAAACAAGCGAAAAGAACCTTCCGCTGACTCGGTTT 32551 Query 152286 CAAACCGTCCACCA 152299 ||| ||||| |||| Sbjct 32552 CAAGCCGTCGACCA 32565 >seq2252 Length=1130325 Score = 82.4 bits (90), Expect = 8e-11 Identities = 140/201 (70%), Gaps = 4/201 (2%) Strand=Plus/Plus Query 117303 GAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATT 117362 |||||||||||||||||| || || | ||| || || || |||||| |||||||||| Sbjct 328893 GAGTGAAAATGTAACGAGGACTGGCGGAATCTTTTCCTCCTTGAAGACGAGTACCGAATT 328952 Query 117363 GTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGA 117422 | || | ||| ||||||||| | |||||| | || || ||| ||| || | || | Sbjct 328953 GACCGATGGGCAACAAGAGGTTGACGTTGTTTGATCCGACGTAGTCTTGTGCGAGATTCA 329012 Query 117423 CAATCGT--ACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTA 117480 |||| || | || | | || || |||||||| || || | | ||| | || Sbjct 329013 CAATGGTCATCATTAGCGACT--GTTCGCCATGGTGGTAGGCGGACATCTCGCCAACCGC 329070 Query 117481 GCCCGCCAGCTGAGCCACCTT 117501 ||| || ||||| || ||||| Sbjct 329071 GCCGGCAAGCTGCGCTACCTT 329091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547196409667200