Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq2252 118 9e-22 seq2162 113 4e-20 seq1739 84.2 2e-11 >seq2252 Length=1130325 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || ||| ||||||| ||| | || ||||||||||| || || Sbjct 562929 ATGCAAATTTTCGTGAAGACTTTGACCGGAAAGACCATCACTCTTGAAGTTGAGGGTTCG 562870 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| ||| |||||||| ||||| || || || || ||||| Sbjct 562869 GACACCATTGAAAACGTCAAGGCAAAGATTCAAGATAAAGAGGGAATCCCCCCAGATCAG 562810 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| || || | |||||| || || | || || | |||| | ||||| |||||| Sbjct 562809 CAGCGCTTGATCTTCGCCGGAAAGCAGCTCGAGGATGGAAGGACCCTGTCCGACTACAAC 562750 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || || || || | ||| ||||| | || | || ||||| || Sbjct 562749 ATCCAGAAAGAATCTACGCTCCATCTGGTTCTCCGCCTTCGCGGTGGAAT 562700 >seq2162 Length=74254 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| |||| || ||| | || ||||| || || ||| || Sbjct 48643 ATGCAGATCTTCGTGAAAACGTTGACAGGAAAGACCATCACTCTCGAGGTTGAAGGATCT 48702 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||||| || |||| || ||| || ||||||||||||||||| || || || |||||| Sbjct 48703 GACTCCATCGAGAACGTGAAAGCTAAGATTCAAGACAAAGAAGGAATTCCCCCAGATCAA 48762 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | |||||| || ||| |||| || | ||| | ||| || ||| Sbjct 48763 CAACGTCTTATCTTCGCCGGAAAGCAACTGGAGGATGGCCGCACCTTGAGCGACTATAAC 48822 Query 27168 ATTCAAAAGGAGTCGAC 27184 || || |||||||| || Sbjct 48823 ATCCAGAAGGAGTCCAC 48839 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || || ||||| | || || | ||||| || || Sbjct 48871 ATGCAGATTTTCGTGAAGACCCTCACGGGCAAAACGATCACATTGGAAGTCGAGGGCTCT 48930 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || ||||| || | |||||| || ||||||||||||||||| || || || ||||| Sbjct 48931 GATTCGATCGAAAACGTCAAAGCTAAGATTCAAGACAAAGAAGGAATCCCCCCAGATCAG 48990 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| || || | || || || ||| | || || | || | || || ||| Sbjct 48991 CAGCGATTGATCTTTGCTGGGAAGCAACTTGAGGATGGCCGCACTTTGAGTGACTATAAC 49050 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || |||||||| ||||| | || ||||| | ||| | || || || || Sbjct 49051 ATCCAAAAGGAATCGACGCTTCACTTGGTCCTCCGTCTTCGAGGAGGGAT 49100 >seq1739 Length=92152 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || || ||||||||| | || || || || || ||| | Sbjct 76353 CATGCAGATCTTCGTGAAGACGCTCACCGGCAAGACCATCACCCTGGAGGTCGAAGCCAG 76412 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||| | ||||| || |||||||||||||||||||| || || || || Sbjct 76413 TGACACAATTGAAAACGTCAAGGCGAAGATTCAAGACAAAGAAGGCATTCCTCCTGACCA 76472 Query 27107 ACAGCGTTTAATATACGCCGGCAA 27130 |||||| | || | ||||| || Sbjct 76473 ACAGCGCCTGATCTTTGCCGGTAA 76496 Score = 82.4 bits (90), Expect = 7e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||| |||||| | || || || || || ||| | | Sbjct 75528 ATGCAGATCTTCGTCAAGACGCTGACTGGCAAGACCATCACCCTGGAGGTCGAAGCCAGC 75587 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| ||||| || ||||||||||| |||||||| || || || || Sbjct 75588 GACACAATCGAGAATGTCAAGGCCAAGATTCAAGACAAGGAAGGCATCCCTCCAGACCAG 75647 Query 27108 CAGCGTTTAATATACGCCGGCAA 27130 |||||| | || | ||||| || Sbjct 75648 CAGCGTCTGATCTTTGCCGGTAA 75670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434902829921280