Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_028656.1 Length=65955 Score E Sequences producing significant alignments: (Bits) Value seq2629 129 2e-25 seq2774 87.8 8e-13 seq2565 82.4 3e-11 >seq2629 Length=15125 Score = 129 bits (142), Expect = 2e-25 Identities = 100/119 (84%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 25734 CCCCGCAGTTACTGGATTAAGCAGGCACAGCAGGCCGTGAATGCTTATATCAGAGAACGA 25793 ||||||||||| |||||||| || ||||| || ||||| || || |||||||||||| || Sbjct 119 CCCCGCAGTTATTGGATTAAACAAGCACAACAAGCCGTCAACGCATATATCAGAGAAAGA 60 Query 25794 GACCGTAATTTGCCGTGCGTTTCATGCGGGACATTCGATTCTGCTCAGTGGGATGCAGG 25852 |||||| ||||||| ||| | |||||||| || || | ||||||||||||||||| || Sbjct 59 GACCGTGATTTGCCATGCATATCATGCGGAACGTTTCAATCTGCTCAGTGGGATGCTGG 1 >seq2774 Length=20939 Score = 87.8 bits (96), Expect = 8e-13 Identities = 202/300 (67%), Gaps = 11/300 (4%) Strand=Plus/Minus Query 34244 TTTATGTG--GTTAACCATAACGGCGAACCATACGTTCCCATGAAACCTGTCGTTGCGGG 34301 ||||||| || ||||| | || | ||||||||||| ||||||||| || ||| | Sbjct 535 TTTATGTATCGTAAACCACGAAGGTAAGCCATACGTTCCAATGAAACCTATCATTGAAGA 476 Query 34302 GATGGGGCTGGCCTGGCAATCACAGTTGGCTAAGTTAAGACAGCGTTTTGCGTCAAC-TA 34360 ||||| | | ||| || ||||| ||||| ||| | | || ||| || || || Sbjct 475 TATGGGTTTAGATTGGGCGTCGCAGTTTACTAAGCTAAAAAAACGCTTTA-GTAAAGGTA 417 Query 34361 TAACGGAAATCGTTATGGTTGCTGAGGATGGGAAACGACGCAAT--ATGGTGTCCCTGCC 34418 | |||||||| || | | | | || | ||||| ||| | | ||| | Sbjct 416 TTGTGGAAATCGCAATACCTTCGAAAGGCGGTGA-----GCAATCAATGATTTGCCTAGC 362 Query 34419 GCTTCGAAAACTTGCAGGCTGGTTACAAACCATCAATCCCAACAAAGTAAAACCCGAAAT 34478 | | ||| | |||| |||||| | | || | || |||||||| || || ||||| Sbjct 361 AATGCATAAATTATCAGGTTGGTTATATTCAATAATGCCTAACAAAGTTAAGCCTGAAAT 302 Query 34479 CCGCGGCAAGGTAATCCAGTATCAGGAAGAGTGTGACGATGTTCTCTATGAATACTGGAC 34538 ||| | ||| ||||||||||| || ||||| || ||||| || || ||||| || ||||| Sbjct 301 CCGAGACAAAGTAATCCAGTACCAAGAAGAATGCGACGACGTACTTTATGAGTATTGGAC 242 >seq2565 Length=10326 Score = 82.4 bits (90), Expect = 3e-11 Identities = 92/117 (79%), Gaps = 7/117 (6%) Strand=Plus/Plus Query 17790 CTGCCAGTGTTGCCCGTTCTCACGCCGTT-CTCGCTCTCGCGCGGGGATACTC-TCTCAT 17847 ||||||||||| ||||||| | | ||||| ||| |||||| |||| | || || || ||| Sbjct 4816 CTGCCAGTGTTCCCCGTTCGCGC-CCGTTACTCACTCTCGTGCGGAGCTAATCATCCCAT 4874 Query 17848 CGACCGGATCGCACCCGATGATACA--GCA--CGTTTACGTGTAGGGGTCTAAACAG 17900 |||||||||||| |||||| |||| ||| || | | ||||||||||||||| Sbjct 4875 CGACCGGATCGCGTCCGATGGTACATCGCAGTACTTCATGCATAGGGGTCTAAACAG 4931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 210923837446464