Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_028657.1 Length=60919 Score E Sequences producing significant alignments: (Bits) Value seq2750 158 5e-34 seq1458 127 8e-25 >seq2750 Length=640 Score = 158 bits (174), Expect = 5e-34 Identities = 269/386 (70%), Gaps = 3/386 (1%) Strand=Plus/Minus Query 24302 CGGAATGTTGCTGAACTGCTCTGCGCTGAACTCGACGTACAGCAGGGCCGTGTTCGGGTA 24361 |||||| |||| || ||| || |||| ||| ||| | ||| || | ||||| Sbjct 575 CGGAATATTGCGAAATTGCCGGGCATCAAACTGCACGAACAATAAGGCGGTTTCGGGGTA 516 Query 24362 GCGCAGCTTCGCGTCGATCACCTCGGTGTAGCCGGCGATCAGCATGGTGTCGGCGATGCG 24421 | || || ||||||||||| |||||| | | | | || |||| ||||| || || Sbjct 515 ACTGAGTTTGGCGTCGATCACTTCGGTGATGGCTTCCACCATCATGCA-TCGGCAATCCG 457 Query 24422 GTTGTTGTTCTGGTTCGGCGTCAGGCGGCGGACGCGCACCTGCCAGCCATTGGTG-GCCG 24480 |||| ||||||| |||||||||| || || || || ||||||||||| | ||| ||| Sbjct 456 GTTGCTGTTCTGCTTCGGCGTCAACCGTCGCACCCGGACCTGCCAGCC-TGCGTGTGCCT 398 Query 24481 CCGGCAGGTCGATCCGGCGGGAACGCTCGTAGCGGGTGGTGGTCTTGCCATCGACGGCCT 24540 ||||| ||||| ||| | || || || || |||||| || || |||||| | ||| Sbjct 397 TAGGCAGATCGATGCGGTGAGAGCGTTCATATTTGGTGGTCGTTTTACCATCGGCTGCCG 338 Query 24541 CGCGCAGCACCTCCTGATAGGCGCCGCCGTCGGTGGCCAGATCTACGGCATATTCGATCC 24600 |||||| |||||||| || ||||| ||||| |||| || | | |||| || |||| Sbjct 337 TTTTCAGCACTTCCTGATACGCCCCGCCATCGGTCGCCACTTCAATGACATACTCAATCC 278 Query 24601 GGTACCCGCCGATGTTGCCGTTGGTGTCCTGCTGCTGGAGCGCTGGCCAGGCGAAGCGCA 24660 |||| ||| || | | |||| | ||| ||| | | ||||| | ||||| | Sbjct 277 GGTAGCCGACGGTATCCCCGTCCTCTTTCTGTGTCTGCAACTGGGGCCATGATAAGCGGA 218 Query 24661 GGCGCACTGCGGAAAGCTGGGTATTG 24686 ||||| || || || ||||||||| Sbjct 217 TACGCACAGCCGACAGATGGGTATTG 192 >seq1458 Length=11418 Score = 127 bits (140), Expect = 8e-25 Identities = 208/297 (70%), Gaps = 2/297 (1%) Strand=Plus/Plus Query 7276 AGAGGTGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTAC 7335 ||||| || |||||||| ||| | || ||||| | || || |||||| ||||| Sbjct 10864 AGAGGCGTAAACAAAGTTATTTTAGTGGGTAATTTGGGGCAGGATCCGGAAGTTCGCTAT 10923 Query 7336 ATGCCCAACGGCAATGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGAC 7395 ||||| || || || || ||||||| || || ||||| |||||||||| || Sbjct 10924 ATGCCGAATGGTGGAGCAGTTGCCAACATTACTCTGGCCACGTCCGAGAGCTGGCGTGAT 10983 Query 7396 AAGCAGACCGGCCAGCAACAG-GAACGCGCCGAGTTCCACCGCGTGGTGTTCTTCGGTCG 7454 ||||| ||||| || | || || |||| | ||||| ||||| | |||||| Sbjct 10984 AAGCAAACCGGTGAG-ATGAGAGAGAAAACCGAATGGCACCGAGTGGTCATGTTCGGTAA 11042 Query 7455 CCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAAGGCAG 7514 ||||| || |||| || ||||||||||| || || || |||||||| ||||||| Sbjct 11043 ACTGGCAGAAGTCGCTGGTGAGTACCTGCGTAAAGGCTCTCAGGTCTATATCGAAGGTGC 11102 Query 7515 CCTGCGCACCCGCAAGTGGCAGGCTCAGGACGGCCAGGACCGATACACCACCGAGGT 7571 ||| ||||| || ||||||| |||| || ||||| || ||||| || || || Sbjct 11103 TTTGCAGACCCGTAAATGGCAGGATCAGAGTGGTCAGGATCGTTACACGACTGAAGT 11159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 194812574199008