Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_028660.1 Length=61035 Score E Sequences producing significant alignments: (Bits) Value seq2774 109 2e-19 seq2629 107 7e-19 seq2692 105 3e-18 seq2565 82.4 3e-11 >seq2774 Length=20939 Score = 109 bits (120), Expect = 2e-19 Identities = 207/300 (69%), Gaps = 11/300 (4%) Strand=Plus/Plus Query 4246 GTCCAGTATTCATAGAGAACATCGTCGCACTCTTCCTGATACTGGATTACCTTGTCGCGG 4305 ||||| || ||||| || || |||||||| ||||| || ||||||||||| ||||| ||| Sbjct 242 GTCCAATACTCATAAAGTACGTCGTCGCATTCTTCTTGGTACTGGATTACTTTGTCTCGG 301 Query 4306 ATTTCGGGTTTTACTTTGTTGGGATTGATGGTTTGTAACCAGCCTGCAAGTTTTCGAAGT 4365 ||||| || || |||||||| || | || | | |||||| |||| | ||| | | | Sbjct 302 ATTTCAGGCTTAACTTTGTTAGGCATTATTGAATATAACCAACCTGATAATTTATGCATT 361 Query 4366 GGCAGGGACACCAT--ATTGCGTCGTTTCCCATCCTCAGCAACCATAACGATTTCCGTTA 4423 | ||| | | ||| ||||| | || | | | | || |||||||| | Sbjct 362 GCTAGGCAAATCATTGATTGC-----TCACCGCCTTTCGAAGGTATTGCGATTTCCACAA 416 Query 4424 TA-GTTGACGCAAAACGCTGTCTTAACTTAGCCAACTGTGATTGCCAGGCCAGCCCCATC 4482 || || || ||| || | | ||| ||||| ||||| || ||| | | ||||| Sbjct 417 TACCTTTAC-TAAAGCGTTTTTTTAGCTTAGTAAACTGCGACGCCCAATCTAAACCCATA 475 Query 4483 CCCGCAACGACAGGTTTCATGGGAACGTATGGCTCACCGTTATGGTTAAC--CACATAAA 4540 | ||| || ||||||||| ||||||||||||| ||| | ||||| || ||||||| Sbjct 476 TCTTCAATGATAGGTTTCATTGGAACGTATGGCTTACCTTCGTGGTTTACGATACATAAA 535 >seq2629 Length=15125 Score = 107 bits (118), Expect = 7e-19 Identities = 115/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 11620 CCTGCATCCCACTGGGCTGAATCGAACGTCCCGCATGAAACACACGGCAAATGACGGTCC 11679 || ||||||||||| || || | ||||| |||||||| | || ||||||| |||||| Sbjct 1 CCAGCATCCCACTGAGCAGATTGAAACGTTCCGCATGATATGCATGGCAAATCACGGTCT 60 Query 11680 CGCTCCCTGATATAAGCATTCACAGCCTGTTGTGCCTGCTTAATCCAGTAACTGCGGGGC 11739 | || |||||||| || || || || |||||||| || |||||||| ||||||||||| Sbjct 61 CTTTCTCTGATATATGCGTTGACGGCTTGTTGTGCTTGTTTAATCCAATAACTGCGGGGT 120 Query 11740 TGTAAGTCCCTCCTGCGCGCTTTCAGCTTGTC 11771 | || | | |||| ||||| || || || Sbjct 121 TTTACTGCTAACTTGCGGGCTTTGAGTTTATC 152 >seq2692 Length=686 Score = 105 bits (116), Expect = 3e-18 Identities = 254/379 (67%), Gaps = 4/379 (1%) Strand=Plus/Plus Query 4932 CGGCAGTCTCTGCCACCGTCCTTAATCCACCAGCGAATCGCTTCACACGCTCCCCTGCG- 4990 ||||| |||||||| ||||| ||||| | ||| | | ||| || ||| ||| Sbjct 261 CGGCAATCTCTGCCGCCGTCAAATATCCAGCGTTTAATTTCCTGACAAGC-CCCTTGCCT 319 Query 4991 ATCGCCTGCATTAATTCGTTTATAAAACGTCGACGGGAAACACTTACCGGGGCCAATGTT 5050 ||| || ||||| | | | || ||||| || | ||| || |||||||||| ||||| Sbjct 320 ATCACCCGCATTCAGTTTTCGGTAGAACGTGGAAGAGAAGCATCTACCGGGGCCGATGTT 379 Query 5051 GTAAGGACAGAATGACGCGATCCCCGCTTTCTGAGGTTCGGTCAGTGGCACTCTGATGTT 5110 ||| || ||||| || || || ||| |||| ||||| ||||||||||| | || | Sbjct 380 GTATGGGCAGAAACTGGCAATGCCGGCTATCTGTGGTTCAGTCAGTGGCACGTTAATATG 439 Query 5111 TTTCGCCACCCATGCCAGCGCCTTATCACGTTCAATGGCGTTAACCTGGTCGCATTTTTC 5170 | |||||||| | |||| ||| ||| ||||||| | | ||||| | Sbjct 440 GCTTCTGACCCATGCAACGGCCTGATCTGCTTCTTTGGCGTTGAGATCACGGCATTGGTT 499 Query 5171 CTTCGACAACTTCATGCCGGGGACG-ACAAGCTTACCATCCACCTGGGTGGCACCACGGC 5229 | | || | ||| || |||| || | |||||| | |||| | || |||| Sbjct 500 CGGTGTCAGTTGCATACC-CTGACGAACGGGAGCACCATCAATTCGGGTTACGCCCCGGC 558 Query 5230 AGATGGTCCAGATACCCACACCATCACGGTATGCCGTGGTGTGGTTGCCTTCCTTTTCAT 5289 |||| |||||||| || | |||| || || |||| ||||||| || ||||||| Sbjct 559 AGATTGTCCAGATGCCAGCTGCATCCCGATACGCCGATAATCGGTTGCCCTCTTTTTCAT 618 Query 5290 CCAGAAACTGGTCGAGGAT 5308 ||| |||||| |||| || Sbjct 619 CCAAAAACTGAGCGAGAAT 637 >seq2565 Length=10326 Score = 82.4 bits (90), Expect = 3e-11 Identities = 92/117 (79%), Gaps = 7/117 (6%) Strand=Plus/Minus Query 19581 CTGTTTAGACCCCTACACGTAAACG--TGC--TGTATCATCGGGTGCGATCCGGTCGATG 19636 ||||||||||||||| | | || ||| |||| |||||| ||||||||||||||| Sbjct 4931 CTGTTTAGACCCCTATGCATGAAGTACTGCGATGTACCATCGGACGCGATCCGGTCGATG 4872 Query 19637 AGA-GAGTATCCCCGCGCGAGAGCGAG-AACGGCGTGAGAACGGGCAACACTGGCAG 19691 || || || | |||| |||||| ||| ||||| | | ||||||| ||||||||||| Sbjct 4871 GGATGATTAGCTCCGCACGAGAGTGAGTAACGG-GCGCGAACGGGGAACACTGGCAG 4816 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 195183761574496