Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_028685.1 Length=62851 Score E Sequences producing significant alignments: (Bits) Value seq2774 172 2e-38 seq2692 131 7e-26 seq2629 107 8e-19 seq2565 82.4 3e-11 >seq2774 Length=20939 Score = 172 bits (190), Expect = 2e-38 Identities = 215/294 (73%), Gaps = 2/294 (1%) Strand=Plus/Minus Query 30941 TTTATGTG--GTTAACCATAATGGCGAACCGTATGTTCCAATGAAACCCATTGTTGAGGG 30998 ||||||| || ||||| | || | || || |||||||||||||| || |||| | Sbjct 535 TTTATGTATCGTAAACCACGAAGGTAAGCCATACGTTCCAATGAAACCTATCATTGAAGA 476 Query 30999 GATGGGGCTGGCTTGGGCTCCACAATTTACTAAGTTAAAACAACGATTTGCCAAAGGCGT 31058 ||||| | | |||||| | || ||||||||| ||||| |||| ||| ||||| | Sbjct 475 TATGGGTTTAGATTGGGCGTCGCAGTTTACTAAGCTAAAAAAACGCTTTAGTAAAGGTAT 416 Query 31059 TACGGAAATCATAATACCTTCTGCTGGTGGTGAGCAAACAATGACTTGTCTTGCTCTGCG 31118 | ||||||| ||||||||| || ||||||||| |||||| ||| || || ||| Sbjct 415 TGTGGAAATCGCAATACCTTCGAAAGGCGGTGAGCAATCAATGATTTGCCTAGCAATGCA 356 Query 31119 TAAGCTGGCTGCCTGGCTTCAGACCATCAACTCAAACAAAGTTAAACCTGAAATCCGCGA 31178 ||| | | | ||| | | | || | | ||||||||||| ||||||||||| || Sbjct 355 TAAATTATCAGGTTGGTTATATTCAATAATGCCTAACAAAGTTAAGCCTGAAATCCGAGA 296 Query 31179 CAAGGTAATCCAGTATCAGGAAGAGTGCGACGATGTTCTCTATGAATACTGGAC 31232 ||| ||||||||||| || ||||| |||||||| || || ||||| || ||||| Sbjct 295 CAAAGTAATCCAGTACCAAGAAGAATGCGACGACGTACTTTATGAGTATTGGAC 242 >seq2692 Length=686 Score = 131 bits (144), Expect = 7e-26 Identities = 260/381 (68%), Gaps = 8/381 (2%) Strand=Plus/Minus Query 30171 ATCCTGGATCAGTTTCTGGATGAAAAAGAAGGTAACCACACCACGGCATACCGTGATAGT 30230 || || | ||||||| ||||||||||||| || |||| |||| || || ||| Sbjct 637 ATTCTCGCTCAGTTTTTGGATGAAAAAGAGGGCAACCGATTATCGGCGTATCGGGATGCA 578 Query 30231 GCGGGTATCTGGACCATCTGCCGTGGAGCCACCCGGGTGGATGGTAAGCCTGTTATTCCT 30290 || || |||||||| |||||||| || | ||||| | |||||| || ||| || Sbjct 577 GCTGGCATCTGGACAATCTGCCGGGGCGTAACCCGAATTGATGGTGCTCCCGTTCGTCAG 518 Query 30291 GGCATGAAGCTGTCGAAGGAAAAATGCGACCGGGTT---AACGCCATTGAGCGTGATAAG 30347 || ||| | ||| | | | ||||| || | | ||||||| || ||| || Sbjct 517 GGTATGCAACTGACACCGAACCAATGC---CGTGATCTCAACGCCAAAGAAGCAGATCAG 461 Query 30348 GCGCTGGCATGGGTGGAGAAAA-ACATCAAAGTGCCACTGACTGAACCCCAGAAAGCGGG 30406 || | |||||||| |||| | || || ||||||||||||||||| |||| ||| || Sbjct 460 GCCGTTGCATGGGTC-AGAAGCCATATTAACGTGCCACTGACTGAACCACAGATAGCCGG 402 Query 30407 GATCGCGTCATTCTGCCCGTATAACATTGGCCCCGGTAAGTGTTTCCCGTCGACGTTTTA 30466 || || |||||||| || ||||| |||||||||| || ||| | || ||||| || Sbjct 401 CATTGCCAGTTTCTGCCCATACAACATCGGCCCCGGTAGATGCTTCTCTTCCACGTTCTA 342 Query 30467 TAAACGAATTAATGCAGGCGATCGCCGGGGTGCATGCGAGGCGATTCGCTGGTGGATTAA 30526 | | | ||||| || ||| | | || || || ||| ||| | ||||| Sbjct 341 CCGAAAACTGAATGCGGGTGATAGGCAAGGGGCTTGTCAGGAAATTAAACGCTGGATATT 282 Query 30527 AGACGGTGGCAGAGACTGCCG 30547 ||||| |||||||| ||||| Sbjct 281 TGACGGCGGCAGAGATTGCCG 261 >seq2629 Length=15125 Score = 107 bits (118), Expect = 8e-19 Identities = 115/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 23982 GACAAGCTGAAAGCGCGCAGGAGGGACTTACAGCCCCGCAGTTACTGGATTAAGCAGGCA 24041 || || || ||||| |||| | | || | ||||||||||| |||||||| || ||| Sbjct 152 GATAAACTCAAAGCCCGCAAGTTAGCAGTAAAACCCCGCAGTTATTGGATTAAACAAGCA 93 Query 24042 CAACAGGCTGTGAATGCTTATATCAGGGAGCGGGACCGTCATTTGCCGTGTGTTTCATGC 24101 ||||| || || || || |||||||| || | |||||| ||||||| || | |||||| Sbjct 92 CAACAAGCCGTCAACGCATATATCAGAGAAAGAGACCGTGATTTGCCATGCATATCATGC 33 Query 24102 GGGACGTTCGATTCAGCCCAGTGGGATGCAGG 24133 || ||||| | || || ||||||||||| || Sbjct 32 GGAACGTTTCAATCTGCTCAGTGGGATGCTGG 1 >seq2565 Length=10326 Score = 82.4 bits (90), Expect = 3e-11 Identities = 92/117 (79%), Gaps = 7/117 (6%) Strand=Plus/Plus Query 16072 CTGCCAGTGTTGCCCGTTCTCACGCCGTT-CTCGCTCTCGCGCGGGGATACTC-TCTCAT 16129 ||||||||||| ||||||| | | ||||| ||| |||||| |||| | || || || ||| Sbjct 4816 CTGCCAGTGTTCCCCGTTCGCGC-CCGTTACTCACTCTCGTGCGGAGCTAATCATCCCAT 4874 Query 16130 CGACCGGATCGCACCCGATGATACA--GCA--CGTTTACGTGTAGGGGTCTAAACAG 16182 |||||||||||| |||||| |||| ||| || | | ||||||||||||||| Sbjct 4875 CGACCGGATCGCGTCCGATGGTACATCGCAGTACTTCATGCATAGGGGTCTAAACAG 4931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 200991384150848