Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_028696.2 Length=41338 Score E Sequences producing significant alignments: (Bits) Value seq2664 553 4e-153 seq2561 132 1e-26 seq2774 127 5e-25 >seq2664 Length=5510 Score = 553 bits (612), Expect = 4e-153 Identities = 961/1383 (69%), Gaps = 16/1383 (1%) Strand=Plus/Minus Query 32863 CCGTACAAACGCGATGGTGAGTTGTTGCAGGTCAAGAGAATCAGCACCGAACGTCCGGAC 32922 || |||||||| | || || |||||||||||||| | ||||| || | ||||| | Sbjct 1900 CCCTACAAACGGAACGGGGAACTGTTGCAGGTCAAGCGCATCAGTACGGTGCGTCCCAAG 1841 Query 32923 GGGAAGAAAGTCATCATGGCAGAAGGTGACTGTGAACCCTGTCTGTTCGGATGGCAGGCT 32982 || || ||||| || ||||| |||| ||||||||||| ||||| || |||||||| Sbjct 1840 GGTAAAAAAGTGATGATGGCGGAAGCCCGGTGTGAACCCTGCCTGTTTGGCTGGCAGGCA 1781 Query 32983 CT--CGAT-GCTGGCGTGAG-GGCGGTTGTGCTTTGCGAAGGCGAAATTGATTGCATGAG 33038 | ||| |||| | ||| || | || || || ||||| || || || ||| |||| Sbjct 1780 ATACCGAACGCTGTCC-GAGTGGTGATTTTG---TGTGAAGGGGAGATCGACTGCCTGAG 1725 Query 33039 CTATGCGCAATACGGAATTCCGACGCTATCTGTCCCGTTCGGTGGCGGGAAAGGCGCTAA 33098 ||| || ||||| | ||| | || ||||| |||||||| || || || || || || Sbjct 1724 TTATCACCAGTACGGTTTGCCGGCCCTGTCTGTGCCGTTCGGGGGTGGTAAGGGGGCCAA 1665 Query 33099 GCAACAGTGGATTGAGTTTGAATACCATAACCTCGACAGGTTTGAAGAAATATTCATTTC 33158 || ||||||||||||||||||||||| || || || | ||||| ||||| | ||||| Sbjct 1664 ACAGCAGTGGATTGAGTTTGAATACCACAATCTGGATCGCTTTGAGGAAATTTGGATTTC 1605 Query 33159 GATGGACGGTGATGATGTTGGTCGTGAAGCTGCAAGGGAAATCGCAAGCCGACTCGGTGA 33218 ||||| ||||| || || || || || || | || || || ||||| | || | Sbjct 1604 CATGGATAACGATGACGTGGGGCGGGAGGCGGCCAAAGAGATTGCCAGCCGGTTAGGGGC 1545 Query 33219 ACATCGCTGCCGTCTGGTTACACTGCCACACAAAGATATCAACGAATGCCTGATGAACGG 33278 |||||||||||| | || | ||||| |||| |||||||| | | || | || Sbjct 1544 ACATCGCTGCCGGTTAGTCAGCCTGCCGTACAAGGATATCAATGCCGGTTTGCAGGCGGG 1485 Query 33279 CGTCGCCGAGGATGAAATCTGGCAGTACATCGGTACAGCGTCATATTTCGACCCCGAAGA 33338 | | | |||||| | || | | | | || || | | ||| ||||| ||||| Sbjct 1484 CATGACACCGGATGAGGTGGTGCGTTGCCTTGAAACGGCAGCCTTTTTTGACCCGGAAGA 1425 Query 33339 GCTTTACAGTGCCCGTGAGTTTTATCAGGACACCATCAATGCTTTCTACGGCAAGCAGCA 33398 | | | ||||||||| ||||||||||||||||| || | || |||||||| || || Sbjct 1424 GTTGTGCAGTGCCCGCGAGTTTTATCAGGACACGATTGAGGCGTTCTACGGTCAGGCCCA 1365 Query 33399 GTATCTGTTTAACCCACCGTGGGAAACGCTGGCTTACAACTTCCAGTTCCGTGAGGCGGA 33458 | ||||||| | |||||||||| | |||| | | ||| ||||| || | || Sbjct 1364 CTGCCTGTTTACCACACCGTGGGACAGGCTGAATCCGCATTTCAGTTTCCGCGAATCAGA 1305 Query 33459 GTTAACGCTTGTCAATGGCGTGAACGGTCACGGAAAAACGGAGGTTGTCGGGCATATGGC 33518 | | ||| | ||||||| || ||||| |||||||||| ||| | |||||||| || Sbjct 1304 GCTGACGGTGCTCAATGGGGTCAACGGGCACGGAAAAAGTGAGATGGTCGGGCACCTGCT 1245 Query 33519 ACTTGAGGCCATGAGACAGGGGATAAAAACATGCGTTGCATCGCTTGAACTGAAGCCAGG 33578 ||| || ||| | ||||| || | || || || || |||| |||||||| || Sbjct 1244 GTGTGAAGCGATGGGGCAGGGCATCCGGGCCTGTGTGGCCTCTTTTGAGCTGAAGCCGGG 1185 Query 33579 GATTCTGCTTAAACGCCTGACCCGGCAGTCTACATGTTGCAAAATGCCGCCAGTTCTGGA 33638 | || || || ||||||| |||| | | || | ||| |||||| || || Sbjct 1184 ACAGTTACTGAAGCGGCTGACCCAGCAGGCGGCTTGCTCGGAAAGGCCGCCGGTGGCAGA 1125 Query 33639 AATCGAATCAGCATTTAAGTTTTACGATGACCGGCTCTGGTTATTTGGCCTGACAGGTAC 33698 |||||| | |||||| ||||||||||||| ||||| ||| | ||||||||||| || || Sbjct 1124 AATCGAGGCCGCATTTCAGTTTTACGATGATCGGCTGTGGGTTTTTGGCCTGACGGGAAC 1065 Query 33699 AGCCAAGGCTGAACGCCTGATTGAAATTTTCACATACGC-CAGACGGCGATACGGCATCC 33757 || || || | || ||||||| || |||| || || ||| || || ||||| || | Sbjct 1064 GGCAAAAGCCGCGCGGGTGATTGAGATCTTCAGCTATGCGCAG-CGTCGTTACGGTATTC 1006 Query 33758 AGTTATTCATCATCGACAGCCTCATGAAGTGCGGTATTGGCGATGACGATTACAACGGGC 33817 || | || | ||||||||||| ||||| |||||||| || || || ||||||||||||| Sbjct 1005 AGCTGTTTGTTATCGACAGCCTGATGAAATGCGGTATCGGGGAGGATGATTACAACGGGC 946 Query 33818 AAAAGGCGTTTGTTGACGCGCTGTGCGACTTCAAGAATAAAACCAACTCTCACATTATCC 33877 | || || ||||| || || ||||| |||||||| || ||| | || | |||| Sbjct 945 AGAAAGCCTTTGTGGATGCCCTGTGTGACTTCAAAAACCGTACCCGCAGCCATGTGATCC 886 Query 33878 TCGTCACTCACTCCAGAAAGGGAGACAGCGAGGAGAAACCTACCGGAAAGATGGACGTAA 33937 | || || ||| |||| || ||||| |||||| ||| || || || ||||| || | Sbjct 885 TGGTGACCCACAGTCGAAAAGGGGACAGTGAGGAGCGACCGACGGGGAAAATGGATGTCA 826 Query 33938 AAGGCTCAGGAGCGATTACAGACCTTACAGATAACCTGTTTATCATCTGGCGCAATAAAG 33997 ||||| | || |||||||| ||||| || || || || | || |||||||||||||||| Sbjct 825 AAGGCACCGGGGCGATTACTGACCTGACCGACAATTTGATGATTATCTGGCGCAATAAAG 766 Query 33998 CTCGCGAGAGAGCGTTAC-AGCGC-GTTCAGGCTGGCGAGCAAATTAAC-GAGAAAGACC 34054 | || ||| | | ||| | | || | || | || | | ||||| || || || | Sbjct 765 CCCGTGAGCGTGTGTTGCAAAAGCAGGACA--CCGGAG-CCGGGTTAACGGAAAAGGAAC 709 Query 34055 AGCAACTTCTTGCTGCACCCGCATCTGTTTTAATGCTTGAGAAGCAGCGAAACGGGGAAG 34114 | || || || | || || | | | || ||||||| ||||| ||||| | | Sbjct 708 GGGAAAAACTGGCCGATCCGGCGGCCATGGTGTTGATTGAGAAACAGCGGAACGGCAACG 649 Query 34115 GGTGGGAAGGTGGTGTGCCGTTATTTCTTGACGAGCAGTCTCACCAGTTCCTGCAAATGG 34174 | ||||| || ||| | | | | ||| ||| | | || || ||||| ||| || Sbjct 648 GCTGGGAGGGCGGTATCGGGCTGTATCTGGACAAAAAATCCCATCAGTTTTTGCCGCAGG 589 Query 34175 AAGGTGCGTCACCATACAACTATATCGCTAACATGCCGAAGTCAGAGTATGACGAAGTGT 34234 || | || || || ||||||| || || |||||| || |||||||||||||||| Sbjct 588 AACGGGCTGATCCCTATCACTATATTGCCAATATGCCGGCCTCTGAGTATGACGAAGTGT 529 Query 34235 GGA 34237 ||| Sbjct 528 GGA 526 Score = 96.9 bits (106), Expect = 9e-16 Identities = 171/247 (69%), Gaps = 2/247 (1%) Strand=Plus/Minus Query 32441 ACCTGTTGCCAAACGGCAAGAAAGAGGGGCATGAGTGGGTTGCCGGCAACGTCAACGGTG 32500 ||||| |||| |||| || | |||||||||||||||| ||| |||||||| | Sbjct 2328 ACCTGCTGCCGGACGGACGCAAGGCCGGGCATGAGTGGGTTGTCGGATCGGTCAACGGGG 2269 Query 32501 ACAAGGGAAACAGCCTGAAGGTTAACCTTAGCGGTAAGAAAAAATGGGCTGATTTCGCTG 32560 | || ||||||||||| |||| | ||| |||||| ||| | || || |||| Sbjct 2268 AAGCCGGCAACAGCCTGAAAATTAATTTGTCCGGCAAGAAAGTCTGGTCCGACTTTGCTG 2209 Query 32561 AGGGAGACGGCGGTGACATGCTTGATTTGTGGATGGCGTGTCGGGGAAT-TAACCTGCAT 32619 | || |||||| || || | ||||||||| | || || | || | | |||||| Sbjct 2208 AAGGCACCGGCGGGGATCTGTTGGATTTGTGGGT-GCAGGTGCGTGATTGTGGGCTGCAT 2150 Query 32620 CAGGCTATGCAGGAAGCGAAAGCCTTTCTCGGCATCAAGGATGATGATCACCATTTCGAC 32679 ||||| ||| ||| || ||| ||||| || || ||||| |||| |||||| | | Sbjct 2149 CAGGCCATGACGGAGGCAAAACAGTTTCTGGGGATTGCCGATGACGATCGCCATTTTGCC 2090 Query 32680 GCCAGAC 32686 |||| || Sbjct 2089 GCCAAAC 2083 >seq2561 Length=11062 Score = 132 bits (146), Expect = 1e-26 Identities = 152/202 (75%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 16363 AAAGATAAATTCAACTGTAGAGATATCTCTATGGTTGCCGCTGACGG-AAAGCTGCGCAA 16421 ||||| ||||||||||||||| ||||||||| |||||| |||| || ||| || || | Sbjct 10862 AAAGAGAAATTCAACTGTAGACATATCTCTACGGTTGCTCCTGATGGCAAAACT-CGTGA 10804 Query 16422 GCTTCTCTGCTTACCACTGAAAAAACTCAACGGCTGGCTGTTCAGTATCAACCCTGAAAA 16481 || | | || | || ||||||||||| || ||||||||||||||||| ||||| | || Sbjct 10803 GCATTTATGTATTCCGCTGAAAAAACTTAATGGCTGGCTGTTCAGTATTAACCCCGCGAA 10744 Query 16482 GGTACGCGCTGACATCCGAGACAAGCTGATCCAGTATCAGGAAGAATGCTTCACCGTTCT 16541 || || ||| || | || || | ||||||||||||||||| || | | || Sbjct 10743 AGTTAAAGCAAGCATTCGCAATAAACTCACTCAGTATCAGGAAGAATGTTTTATTGCCCT 10684 Query 16542 GTATGACTACTGGACGAAAGGT 16563 | ||||||| ||||| || ||| Sbjct 10683 GCATGACTATTGGACCAAGGGT 10662 >seq2774 Length=20939 Score = 127 bits (140), Expect = 5e-25 Identities = 85/94 (90%), Gaps = 2/94 (2%) Strand=Plus/Minus Query 37710 GGGGCTTTTTTATTTT--GGGTCAGTCGTATAAAGGTTATTACGGAAGGCTGTTAACCTT 37767 ||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||| Sbjct 20164 GGGGCTTTTCGCGTTTAAGGGTTAGTCGTATAAAGGTTATTACGGAAGGCTGTTAACCTT 20105 Query 37768 CTTATCGTGGTTCGAGTCCACGCTGTCCCGCCAA 37801 ||||||||||||||| |||||||| ||||||||| Sbjct 20104 CTTATCGTGGTTCGATTCCACGCTATCCCGCCAA 20071 Score = 100 bits (110), Expect = 8e-17 Identities = 151/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 15721 TGTATATGTTTATTTTTCTCAGTCCATGCCTCAAGAGCAGCAACCATTTCAGCGTTTAAA 15780 || || || |||||| | |||| ||| |||||||| || || ||| || |||| | Sbjct 1064 TGAATGTGCTTATTTCTATCAGCCCAAGCCTCAAGCGCGGCTGTCATCTCTTGGTTTGAT 1005 Query 15781 GAGCGTGAGTTTGCCTCAGCAAGCTCAGTAAGTCGGTCTTTTATCTCTAACGGAAGCCTT 15840 || | ||| || ||||||| || | |||| ||||||| ||| || || | |||| Sbjct 1004 GATCTGCCGTTGGCTTCAGCAATTTCTGCTAGTCTCTCTTTTAGCTCCAAAGGTATCCTT 945 Query 15841 AGATTTACTTGTGGGTTTTTGTACTTTCTATCTGACATAACCATATCCTGATTAtttttt 15900 | ||| ||||| || | | || ||||| |||| |||| | | |||| |||||||| Sbjct 944 AAATTAACTTGAGGATGCCTATATTTTCTCTCTGTCATACCTAC-TCCTA--TATTTTTT 888 Query 15901 tAACAGGATAAGTAGGTATCTATTGACTATC 15931 || || || |||||||||||||||||||| Sbjct 887 TAT-AGAGTAGGTAGGTATCTATTGACTATC 858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132155505238400