Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_028896.1 Length=32675 Score E Sequences producing significant alignments: (Bits) Value seq2595 497 2e-136 seq2606 423 4e-114 seq2689 116 8e-22 seq2573 96.9 7e-16 >seq2595 Length=21780 Score = 497 bits (550), Expect = 2e-136 Identities = 945/1380 (68%), Gaps = 20/1380 (1%) Strand=Plus/Minus Query 10593 ATGTTCAGGCCAATAAGGTGGCGGCTTGCAGGTTTGGCATCAGCAATCAGCCGTTCCATT 10652 |||| || ||||| | || |||||| | ||||| ||||| |||||| ||||| | Sbjct 20394 ATGTCCAATCCAATCAAATGTCGGCTTACCGGTTTTGCATCGAAAATCAGGTTTTCCAGT 20335 Query 10653 TCCTGATACATTGCCTCTGTGATACCGCTTTCCAGTACACCAATATCAAGCCGGAAGGTG 10712 || | ||||| | | ||||||||||| ||||| ||||||||||| || ||||||||| Sbjct 20334 TCTTCGAACATTTCATGGGTGATACCGCTGTCCAGAACACCAATATCCAGTCGGAAGGTG 20275 Query 10713 CCTGGCGGGTCACTGTTTTCCCACCACTCCGTCACGTTAATGAGATAGCCGAGCGGCTCC 10772 ||||| | || || | | |||||| ||| | ||| |||||||| || | |||||| Sbjct 20274 CCTGGGGCATCGTTGGTCTGCCACCATTCCTTTACGCGGATGAGATAACCCAACGGCTCA 20215 Query 10773 ACCACACGCCGGATTGCGCCGATAGTGCCTTTATGACAGTGGATGAAATAGGCATCGCGG 10832 | ||| || ||||| || || || || ||||| || || | ||| | | | | Sbjct 20214 ATCACTCGTCGGATGGCTCCAATCGTTCCTTTGTGTTTATGCAGGAACAGTGAACCCTTG 20155 Query 10833 ATAACGGCACGTTTGGTCGCT-TCCGGCCACTTTTCATCCCACCTGTCGACCGAAAACGC 10891 || || | | |||||| ||| || | ||| ||||| ||||| | ||| || || |||| Sbjct 20154 ATCACTTCCCTTTTGGT-GCTCTCAGACCAGTTTTCGTCCCAGCGGTCCACAGACCACGC 20096 Query 10892 CCACGCCAGCCACGGCAGCAGATTTGCCGGGCAGGTGTCCGGGTTCCACAGTTCACGAAT 10951 ||| ||||| | ||||| | |||||| ||||||||||| |||||||| || || | Sbjct 20095 CCATGCCAGATAAGGCAGTAACGATGCCGGACAGGTGTCCGGATTCCACAGCTCCCGCAA 20036 Query 10952 CCTGACCGGCGTTTTTTCAATTTCCGCACAGGCTTTTGCGGCGGCAACTTCAAGCGGTGA 11011 || | || | | || ||||||||||| || || || | ||| | ||| | Sbjct 20035 TGGGATTTTGATCTTCTGCAACTCGGCACAGGCTTTCGCCGCAGCCAGTTCTAACGGCGT 19976 Query 11012 TGAGCCGGTCGGCAGCAGTCGCGAATCACTCATCCGAGCCTCCG---GTCACGACGCGGT 11068 ||| || ||||||| || || |||| ||||| || ||||| |||| | ||| Sbjct 19975 TGAACCCATCGGCAGAAGGCG---ATCATTCATCAGAACCTCCCATTGTCAGT--GTGGT 19921 Query 11069 ATTCAGTACAGAAAGACGCCTGCGTACTGTTGAGCACAATGTCGGCCAGTGGTGCGGCCA 11128 || || || |||| ||||| || | | | |||| ||| || |||||| || Sbjct 19920 TTTG-GTGCAATAAGAAGCCTGTGTTTTATCCAATACAACGTCTTTCAATGGTGCTTTCA 19862 Query 11129 GCTCGACACGCTGCACGCCTTCCACATGCAAAGCGGCATAAATGGCAGACAGACGGATGT 11188 |||| |||||||| || ||||||||||||| ||||| ||||| || |||| ||| || | Sbjct 19861 GCTCCACACGCTGGACACCTTCCACATGCAGTGCGGCGTAAATAGCTGACAAACGAATAT 19802 Query 11189 CGCGCCCCAGCCGGTGCTGTGCCGTGATATACGCTTCCAGCTTTTTCACAGCGGCAGCGC 11248 | || |||| || ||||| || | ||| || ||| || | | | || || || Sbjct 19801 CACGTCCCAAACGATGCTGCGCTTCAACATAGTGTTTCAGTTTCTGCTCTGCTGCCTTGC 19742 Query 11249 GAATGGGTTCGCTTTCGGGACCAGGGTAAAGGTAAAGCGTGGCGTTTATCTGATATTCAA 11308 | || || ||| ||| || ||| | | ||| ||| || | || | |||||| | Sbjct 19741 GGATAGGCTCGGATTCCGGCGTCGGGAAGATGTACAGCACCGCATCAATTTCATATTCCA 19682 Query 11309 CGATGGCGGCAGACTGCACGGTCACGCGGTCGGCCACCGGCCTGACGTCCTCACCATTAA 11368 | ||| || ||||| || ||| || || |||||||| | |||| || |||| | Sbjct 19681 CAATGCTCGCTGACTGGACTTTCAGACGATCAGCCACCGGACGCACGTTTTCGTCATTCA 19622 Query 11369 GGGCGTTACGCACCACAGCCAGCAGGTCTTCGGATGCGACGCCGTTATTTTCACGTGACA 11428 |||| || || | ||||||| |||| |||||| || || || | | |||| |||| Sbjct 19621 GGGCTTTTTCGACAATTTCCAGCAGCTCTTTGGATGCCACTCCTTTGTCTGCACGGGACA 19562 Query 11429 GCACAGAGATGGTGACACAGGCAGGAGACGGACTGGTGACAGAAATATCGGCGACACGCC 11488 | || | ||||| || || ||||| ||| | | || ||| || || || | Sbjct 19561 TAATAGTTACTGTGACGTTAGCCGGTGACGGGCTGATTGCCGATGCATCTGCAACGCGGC 19502 Query 11489 CGTCAGCACTGCGACCATGATACTGATAGGCTCCCACTGACCCGGCGACGCTTAAGCCCT 11548 | || ||||| || ||||||| | ||| || ||||| | || || ||||| || || | Sbjct 19501 CATCCGCACTACGGGCATGATATTCATAAGCACCCACCGGGCCTGCAACGCTCAAACCTT 19442 Query 11549 CAAAAGCCTGCTGAATACGCAGACGATAATCGGTGTCAGATTCCATCACTGCCGGTGTCG 11608 |||| ||||| ||||||| | |||| ||||| |||| |||||||| || || || || | Sbjct 19441 CAAATGCCTGTGGAATACGGACACGAAAATCGTTGTCGGATTCCATAACGGCAGGAGTTG 19382 Query 11609 GCGGAATGGTCGAATCATCTGCCGGGGTGATAATCAGGCGCGTGGTGTTGTAATTGGCAC 11668 |||| | |||||||| ||| || | | || || ||||| ||||| ||| | | Sbjct 19381 GCGGTACGGTCGAATTATCCGCAGAACGCAAAACCATGCGCGATACGTTGTTATTCGAGC 19322 Query 11669 CAATTACATCAAGGTCATTACCGGCAGCACAGGCCAGCATCACCGCCCGTGCGGCCTCAT 11728 | | ||| || ||| |||||| | | |||||| ||| ||||| || || || |||| Sbjct 19321 CCAGCTGATCCAGATCACTACCGGTTGAATAGGCCACCATAACCGCACGGGCTGCTTCAT 19262 Query 11729 TCACACGCTGACGCCAGATAAGC---TCACGATAAGCATTTTCCTCCAGCAGTTTGACGA 11785 | || ||||| ||| | |||| || || || ||||||| ||||||| || || | Sbjct 19261 TAACGCGCTGGCGC---AGAAGCAATTCGCGGTACACATTTTCTTCCAGCAACTTCACCA 19205 Query 11786 GAGGCTCAGATTCCAGCGTCAGGGTACGGGCGACCGCCTCCTGCTGGTCTTCCGGGTAAA 11845 ||| || |||||||| || || ||||| || || |||||||| ||| |||| |||| Sbjct 19204 AAGGTTCTGATTCCAGTTGCAATGTTCGGGCAACAGCATCCTGCTGATCTGCCGGATAAA 19145 Query 11846 GGGAAATCAG-TGTCGCCTTGCGTTCAGCGAGAATGGTTTCAAAGTCCAGCTCCTCGACC 11904 | |||||||| ||| || || || | | | ||| | ||||| ||| ||| Sbjct 19144 GCGAAATCAGACCTCG-TTTACGCTCTTCTAACAGTTGTTCGTAATCCAGTGGCTCAACC 19086 Query 11905 ACATCCGGTGCGGGTAGCTGGTTCAGGTCGATAATCGGCATGGTTTCAACTCACAGGGAT 11964 |||||||||| |||| |||| | | ||||| | ||||| | || | ||||| || || Sbjct 19085 ACATCCGGTGGTGGTAACTGGCTTAAATCGATTGTTGGCATTGCTT-ACCTCACCGGAAT 19027 >seq2606 Length=3143 Score = 423 bits (468), Expect = 4e-114 Identities = 1154/1746 (66%), Gaps = 86/1746 (5%) Strand=Plus/Minus Query 5011 ACAGGCCGATATTGCGGCGGTGTTGCTCCAGCCGGTCGACGCCGTTCACCTTCTCAATCA 5070 |||| || ||| || || || || |||| || || | ||| ||| ||||||| || Sbjct 1912 ACAGACCAATAGCACGACGATGCTGTGCCAGACGATCTTCTCCGCCCACTTTCTCAACCA 1853 Query 5071 TGTTGATGGTGTCGATTTCGACCAGCTCCTTACCGTCCATCGTCAGCCGGAAATAGGTGC 5130 |||||| |||||||||||| | ||| || | || ||| ||||| ||| || ||| Sbjct 1852 TGTTGACGGTGTCGATTTCAATCAGTTCTTCGCCATCCCAGGTCAGTTTGAAGTAAGTGT 1793 Query 5131 AGACCACGGAGATTTTCGACTCGGTGTCTTCTCCCTGTTTACCCTCGCCGGTGTCGATTT 5190 | ||| ||||| | | |||| || ||||| ||| ||| || | || Sbjct 1792 TTTTCGCGGTAATTTTGGTTTGAGTGTTATCACCCTGCTTATAAGTACCGTGATCAAATT 1733 Query 5191 CTTTCTGACGTCCACGCATGACCACCTCGACGGCCACCGTTTCGCCGGTATCGTCGCGCT 5250 | | ||| |||||||| || || || || || ||| || || || || ||||| | Sbjct 1732 CCTGAAAACGGCCACGCATAACAACTTCAACTGCAACCACATCACCTGTGTCTTCGCGTT 1673 Query 5251 GGTAAGAGCCTGCAAAACGAATCGGCACGGCATCCACACCG---GTTGCGGCGTAAAGCT 5307 ||||||||||||| || | | || |||| || | | | ||| | | | | Sbjct 1672 CAAAAGAGCCTGCAAAGCGCAGCATGACACCATCGAC-CTGAGCGATGCCCC--ACTGTT 1616 Query 5308 CCCAGATAACCGAATCCGGGAAGCCACCCAGCGACCACTCC--ATTGACAGCGCATCGTC 5365 | | || || | || ||||| | | ||| || | |||| | || Sbjct 1615 TGTACAGTTGGGACTCA---ATACCGCCCAGAGTGAATTCCGCATCCAATGCGCCT--TC 1561 Query 5366 ATCAAGGCCGAGGTCTACCGGTGCGCTGCCGTTCATCCCCGCACCGCGATAGTTTTCGAG 5425 ||| || || || || ||| ||||||||||||||| || ||||| || ||| ||| || Sbjct 1560 ATCCAGACCCAGATCCACCATTGCGCTGCCGTTCATACCAGCACCACGGTAGGCTTCCAG 1501 Query 5426 CTTACGGGTCAGTTTTGGCAGCGTGACGGACTTTG-CAACGCCCTGATAGCTGTAGCCGT 5484 || ||| |||| || || || || | | ||| | ||| |||||||||| ||| ||| | Sbjct 1500 TTTGCGGCTCAGCTTAGGAAGAGTCA-GCTCTTCGACAATGCCCTGATAGTTGTTGCCAT 1442 Query 5485 TCAGAAAGACGTTCATTAACTTGAGTTTGCGCGGCATTGCCATCGGTCAGGCTCCTTA-- 5542 || | |||| | || |||||||| || | ||||||| || || | ||||| Sbjct 1441 CGTTGAACAAATTCAGATATTTAAGTTTGCGAGGTAATGCCATCAGTTAGCC-CCTTATT 1383 Query 5543 -ATTGCT--TTTAACCGAAGTGACCAGATTTGCCAGGTATTTATCGGTAATACGCTGGCG 5599 |||| | ||| |||| | ||| |||||| |||| ||||| |||||||| Sbjct 1382 TATTGATACTTTTTGCGAAAT--CCAT------CAGGTAACTATCTGTAATGCGCTGGCG 1331 Query 5600 CAGGGTCAGGTTTTCGAGAGGAGGCACCGGGGTATAGTCATAGTCGATATACAGTTTTCC 5659 | ||| |||||| || || || || ||||||||||| || ||||| |||||| || Sbjct 1330 TAACATCATGTTTTCCAGTGGCGGTACAGGGGTATAGTCGTAATCGATGGTCAGTTTGCC 1271 Query 5660 GGCCTTGAGGGTTTCCGCATCGTTGGATTCTTCGCTGAACCAGCAGGTCGCATCCACGAT 5719 || || ||||| || ||||||| || ||| ||||||| | || | ||| Sbjct 1270 TGCTTTCAGGGTGTCTTTATCGTTGATTTTGTCGTCATACCAGCAACGACCGTCAATGAT 1211 Query 5720 ATAGCCGTTTGTTTTCAGCTCACGGAATTTGGCATTGATGCCGTCAACGATGTCGCGAAT 5779 |||||| | |||||| |||||||| || ||||||||||| || | |||||||| | Sbjct 1210 GTAGCCGCCCGCTTTCAGTTCACGGAACTTAGCATTGATGCCTTCGATAATGTCGCGTAC 1151 Query 5780 CAGCGTTGCGGTGATGGGCTTGTCCACCGCCCACATATGCGCCTCAGCCATCGTGTCGGC 5839 ||||| || ||| | || ||||| | |||||||||||||| |||||||| ||||| || Sbjct 1150 CAGCGATGGGGTCAGCGGTTTGTCGATTGCCCACATATGCGCGTCAGCCATGGTGTCAGC 1091 Query 5840 CAGCACCTGCGCGGTGCGGGTGTAGTTTTCAAAGAGGAACAGCGGGTCATCAGA------ 5893 ||| ||||| ||||| ||||||||| |||| || ||||||| | ||| ||||| Sbjct 1090 CAGTACCTGAGCGGTACGGGTGTAGCTTTCGAATGGGAACAGTGAGTCCTCAGAAGCAGA 1031 Query 5894 ------GCAGGTACGGTTACCCCAGAATCGGAAACCGTCGCGGCGAATCAGCGTAGTGAC 5947 ||| || || ||||||||| || ||||||| ||| ||||| || |||| Sbjct 1030 GCCAGCGCAAGTGCGTGAACCCCAGAAACGAAAACCGTTTTTGCGGATCAGTGTTGTGAT 971 Query 5948 GCCTGA--CTCGTTAAGCAGGTCAGCATCGGTGCCGGACTCCTGCAAATCCCAGAATACA 6005 | ||| || ||| ||||| ||||| || || || | | | |||| ||||||||| || Sbjct 970 G--TGATTCTGGTTCAGCAGATCAGCCTCAGTTCCAGTCGCTTGCAGATCCCAGAAGAC- 914 Query 6006 GATGCGCTGAT--GCCGGTAACACCGTTTACCCCGACGTTGGACAGCGTTTTATGCCAGC 6063 || || ||| || || || ||||| || || || ||||| || ||||| ||||||| Sbjct 913 -ATCAGCAGATAGACCCGTTACGCCGTTAACACCCACATTGGATAGGGTTTTGTGCCAGC 855 Query 6064 CCTGCTCCTGGTCGATTTTAGCGCGCAGACCCAGCGCACGGGCGGTGGCATACGCGGTGG 6123 | || | ||||||||| || |||| ||||| ||| || || ||| ||| | Sbjct 854 CGGTTTCTTCGTCGATTTTGGCACGCAAGCCCAGTGCATAAGCCGTCGCA-----GGT-G 801 Query 6124 CGGTGGTACTGTTGACC-GTATCCCATGCGAGGAAATCCGGCCAGATGACCATCAGCTCA 6182 || | || || ||| | | |||| |||||||| ||||| || | ||| | |||| Sbjct 800 CGAT--AAC--TTCACCTTTGTTCCATCTCAGGAAATCAGGCCAAATTAACATTACCTCA 745 Query 6183 CGCTGGCTGAAATTCTGGCGGTAGGCTTTCACCTCGGAAATGGTTTTACAGCCCCATGCG 6242 ||||| | ||| || | || || | || || || || |||| ||||| | ||| Sbjct 744 CGCTGACCGAAGTTTTCACGATATTTGATAACTTCAGAGATATTTTTGCAGCCATAAGCG 685 Query 6243 CTGATATACCCGAAAGCGCGCAACTTCTGACACACTGATGCCAGTGCAACTGCCACCTCT 6302 |||| ||| | | || || | || | | | || ||| || | || || | Sbjct 684 CTGACATATGCCATTGCTTTCAGTTGCTTAGCAATAGCGGCGAGTTCAGCAGCAACTGGT 625 Query 6303 TTGGTGTCCAGTCCCGGTACGCCGAGAATACGCGGTTTAACACCG-GTTACCGACTCCGC 6361 || | |||||| || || || || ||||| || |||||||||||| | | | | || Sbjct 624 TTTGAGTCCAGACCTGGAACACCCAGAATGCGTGGTTTAACACCGAGCTGGC-TTTGTGC 566 Query 6362 CGCCAGCAGGGCTTTCAGTCCGGTGTACTGACCGTTTTCGTCGGT---GGTGCCGATGAT 6418 ||||| ||| || | || ||||| | || ||| ||| ||||| |||||||| Sbjct 565 CGCCAACAGCGCCTGCATACCGGTTTTCTTACC---TTCATCGGTAACACCACCGATGAT 509 Query 6419 ATTGGAAACGGTCTGCGCGAGTTTCGTTTCCTCGTCGTCGCCGGTGCCGTCTTCCACACG 6478 || || | ||||| ||| || | |||| ||||||||||| Sbjct 508 GTTACTAATG----------GTTTC--TTCTTCAGATT------TGCCTTCTTCCACACG 467 Query 6479 CACAACAACGGTGACCGGTTTTGACTGGTCGGCGATGGCCTGCAACGCTGCCGCCAGCGT 6538 ||||| || || || || | ||| | |||||||| | || | || | || || Sbjct 466 AACAACCACAGTCACAGGCAGAGCCTGAGCAGCGATGGCTTTCAGAGATGTAGACAAAGT 407 Query 6539 GCCTTTTTTACCGGCCTTTGCAATTGCGCTCTGCACATTGGTAATCAGCACCGGTTTATT 6598 |||||||| |||||||| || | |||||| || | |||||||| || || |||| Sbjct 406 GCCTTTTTCCCCGGCCTTGCCACTGGCGCTCATAACGTCAGTAATCAGGACTGGAGTATT 347 Query 6599 GAGGGGGAAGATTTCCGCATCCGCATCGCTGGCCGTGCAGACCAAGCCGACAATGGCAGT 6658 | || || ||| | || || || || || || |||| || || || || || Sbjct 346 TAATGGAAATGTTTTTTCGTCTGCGTCAGGAGCAGTACAAACCATACCTACGATAGCGGT 287 Query 6659 GGATACGGTGGAAATGACGCGGGTGCCGTCGTTAATCTCCAGCACCTGCACGCCGTGATG 6718 | ||||| | ||| || || || |||||||| ||| | || | || |||||||| Sbjct 286 GCTAACGGTAGTGATGGTACGAGTACCTTCGTTAATTTCCTGTACACGGACTCCGTGATG 227 Query 6719 ATAGTC 6724 ||| || Sbjct 226 ATAATC 221 >seq2689 Length=1181 Score = 116 bits (128), Expect = 8e-22 Identities = 130/174 (75%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 10602 CCAATAAGGTGGCGGCTTGCAGGTTTGGCATCAGCAATCAGCCGTTCCATTTCCTGATAC 10661 ||||| || |||||| || ||||| |||||| |||||||||||||| || ||||| Sbjct 1008 CCAATCAGATGGCGGGAAGCGGGTTTCGCATCAAAAATCAGCCGTTCCAGCTCGTGATAG 1067 Query 10662 ATTGCCTCTGTGATACCGCTTTCCAGTACACCAATATCAAGCCGGAAGGTGCCTGGCGGG 10721 | || || ||||| ||| | |||| || || ||||| |||||||||||||| |||| Sbjct 1068 GTGGCTTCGGTGATGCCGGTGTCCATCACGCCGATATCCAGCCGGAAGGTGCCGGGCGCA 1127 Query 10722 TCACTGTTTTCCCACCACTCCGTCACGTTAATGAGATAGCCGAGCGGCTCCACC 10775 || | ||| | |||||| || | | | ||| | |||||||| ||| || ||| Sbjct 1128 TCGCCGTTCTGCCACCATTCAATAAGGCGAATTAAATAGCCGAACGGTTCAACC 1181 >seq2573 Length=24683 Score = 96.9 bits (106), Expect = 7e-16 Identities = 192/282 (68%), Gaps = 2/282 (1%) Strand=Plus/Plus Query 12526 ACAGAATCAGAAGCCATCACGCTGGCCGTTTTAACTCCGCTTACCGTGAGCGCACTGGTT 12585 ||||| || || ||| | || |||| ||||||| || ||||||| | || | || | Sbjct 830 ACAGATTCTGATGCCGTTACTGTGGCGGTTTTAATACCTGTTACCGTCAATGCGCCGGAT 889 Query 12586 TCAGGTTCATACTCAATCACCGCCCCGTCAGGGAA-ACGGATATGCAGGGCATCCGCCGA 12644 | ||||||||||| ||||| || || || || || |||| ||||| || || | || Sbjct 890 TGCGGTTCATACTCCATCACTGCGCCATCTGGAAATACGG-TATGCGTCGCTTCGGGAGA 948 Query 12645 CGCAGACGGCGCGGGGTTATCGCCGGAATAAATCCCCGGCAGAACGAACGCCGTGTCGAG 12704 | || || || || |||| ||| ||||| | |||| || || || ||| || Sbjct 949 TGTTGAGGGTGCCGGAAAATCGTTGGAGAAAATCGCTGGCAATACAAAGGCGGTGGTTAG 1008 Query 12705 TTCACCGCCCACGGCCAGAATCAGCACCTGTTCCCCCACGGAAGGTGCCCACCATGTGCG 12764 ||||| || | || || | | ||||| || || || ||||||||||| ||||| Sbjct 1009 CTCACCACCGATGGAAAGCAATAAAACCTGCTCACCTACACTGGGTGCCCACCAAGTGCG 1068 Query 12765 CGAACGTCCGGCGCGATGGGTCAGCCACTGAAGCCAGTCGGT 12806 || ||| || | ||||||||| | ||||||||||| Sbjct 1069 GGAGTTTCCTGCTCTGGAGGTCAGCCAGTATAGCCAGTCGGT 1110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 104434848050016