Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_028956.1 Length=52139 Score E Sequences producing significant alignments: (Bits) Value seq2668 165 3e-36 >seq2668 Length=6945 Score = 165 bits (182), Expect = 3e-36 Identities = 258/362 (71%), Gaps = 14/362 (4%) Strand=Plus/Plus Query 40656 ATATTATTTGTAGAAGATCAAACCTAATCTGACAGTCCCCCGTTTTAAATTACCGTGTCT 40715 |||||| |||| || |||| ||||| ||||| || |||| |||| ||| Sbjct 555 ATATTAGGTGTATTAGCCCAAATTTAATCCGACAGCTACCTATTTT---TTACTGTGA-- 609 Query 40716 GTCAGATTAATTTGAGCTTAAATTCTTTTCCACCCAAATCCGTTTTCCATCAAGTAAGGT 40775 ||| | |||||||||| ||||||||||| |||||| ||||||||||||| |||| || Sbjct 610 GTC---TAAATTTGAGCT-AAATTCTTTTCTGCCCAAACCCGTTTTCCATCATGTAATGT 665 Query 40776 TGCCATCGGTGTTCTGCCACAGCACATTTTTCC-TTGATGTGTTCGATGGTGATTATAAT 40834 ||||||||||||| |||| || ||||||||| ||||| | ||| | || ||||||| Sbjct 666 GACCATCGGTGTTCTCCCACCGCTCATTTTTCCACTGATGGGGTCGTTCATGGTTATAAT 725 Query 40835 ACATTAACCACTCATCTAAATCCGCTTGTAATGTCGTTAAATCCGTATAAATTTTCTTCC 40894 | || ||||| || |||| ||| | | || | || | ||||| | Sbjct 726 AGATCAACCAGCAGTCCAAATTTTTTTGCAGCTGCTCCGGATTGCTGTACAGCTTCTTAC 785 Query 40895 TAAATGCCACTTGGTAAAATTCTTGTAAGATTGTTTTATGGAACCGTTCGCAGATACCAT 40954 | || ||| || ||||| || | || || ||||||||||| || || || || |||| Sbjct 786 GGAGTGTCACCTGATAAAACTCATTCAAAATCGTTTTATGGAAGCGCTCACAAATCCCAT 845 Query 40955 TCGTCTGGGGATGCTTCA--CTTTCGTTTTCGTATGCTCTATGTCATTTATCGCTAAATA 41012 |||| || || || ||| |||||||||| ||||| | |||||||| ||||| | ||| Sbjct 846 TCGTTTGTGGGTG--TCAGGCTTTCGTTTTAGTATGGTAGATGTCATTAATCGCCAGATA 903 Query 41013 AA 41014 || Sbjct 904 AA 905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 166717529743968