Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_029015.2 Length=33509 Score E Sequences producing significant alignments: (Bits) Value seq2595 309 6e-80 seq2689 197 3e-46 >seq2595 Length=21780 Score = 309 bits (342), Expect = 6e-80 Identities = 1262/1980 (64%), Gaps = 37/1980 (2%) Strand=Plus/Plus Query 10413 ACGATCGATTTATCGCAGTTACCGCCGCCCGTGGTGGTAGAACCGCTGGACTTCGAAACG 10472 || ||||||||| |||||||| || || | ||||| || || ||||| | |||| Sbjct 19051 ACAATCGATTTAAGCCAGTTACCACCACCGGATGTGGTTGAGCCACTGGATTACGAACAA 19110 Query 10473 CTTTTCGCGCAGCGCAAGGCCGCATTTATTGCGATGTACCCGGAAGACGAGCAGGAAGAG 10532 || || | |||| || | | ||| || | || |||| ||| ||||||| | Sbjct 19111 CTGTTAGAAGAGCGTAAACGAGGTCTGATTTCGCTTTATCCGGCAGATCAGCAGGATGCT 19170 Query 10533 ATCGCCCGCACGCTTGAGCTTGAATCGGAGCCGATCACCATGCTGCTGGAAGAGAATTGC 10592 | ||||| || | | || ||||| || || | | | |||||||||| ||| Sbjct 19171 GTTGCCCGAACATTGCAACTGGAATCAGAACCTTTGGTGAAGTTGCTGGAAGAAAATGTG 19230 Query 10593 TATCGCGAATTGCTGTTGCGCCAGCGGGTGAATGAAGCGGCCCGCGCGGTGATGCTGGCT 10652 || ||||||||||| |||||||||| || |||||||| ||||| ||||| ||| |||| Sbjct 19231 TACCGCGAATTGCTTCTGCGCCAGCGCGTTAATGAAGCAGCCCGTGCGGTTATGGTGGCC 19290 Query 10653 TATTCCACGGATAGCGATCTGGATAATCTGGCGGTC-AATTTCAACGTTGAACGTCTGAC 10711 ||||| || | ||| ||||||||| | |||| | || ||| |||||| || || Sbjct 19291 TATTCAACCGGTAGTGATCTGGATCAGCTGG-GCTCGAATAACAACGTATCGCGCATGGT 19349 Query 10712 ----CATTCAG-GAAGAAGACGACAGCGTTACTCCGCCAATTGAAGCCGTGGTGGAGTCA 10766 | ||| | | | || |||| | ||| |||||| | ||||| |||| || Sbjct 19350 TTTGCGTTCTGCGGATAATTCGACCG---TAC--CGCCAACTCCTGCCGTTATGGAATCC 19404 Query 10767 GACGCGGATTTACGCACGCGTACCCAGCAGGCTTTTGAAGGTCTGAGCGTGGCCGGGCCA 10826 ||| ||||| || |||| | ||||| ||||||||| ||||||| || || || Sbjct 19405 GACAACGATTTTCGTGTCCGTATTCCACAGGCATTTGAAGGTTTGAGCGTTGCAGGCCCG 19464 Query 10827 ACGGCGGCGTATGAGTTTTGGGGGCGTTCGGCTGACGGGCGCGTAGCTGATATTTCGGCG 10886 || || ||||| | | | ||| || || || ||||| || ||| ||||| Sbjct 19465 GTGGGTGCTTATGAATATCATGCCCGTAGTGCGGATGGCCGCGTTGCAGATGCATCGGCA 19524 Query 10887 GTCAGTCCTACGCCTGCCTGCGTCACCATTTCGGTGCTGTCGCGCGAGGGTGACGGAACG 10946 |||| || | || || |||||| | | | |||| || | | | ||| | Sbjct 19525 ATCAGCCCGTCACCGGCTAACGTCACAGTAACTATTATGTCCCGTGCAGACAAAGGAGTG 19584 Query 10947 GCCAGCGATGATCTGCTTTCCGTTGTCGCTGCCGCCCTGAACGATGAAGAGGTGCGCCCG 11006 || | | || ||||| |||||| |||||||| || ||| | ||||| ||| Sbjct 19585 GCATCCAAAGAGCTGCTGGAAATTGTCGAAAAAGCCCTGAATGACGAAAACGTGCGTCCG 19644 Query 11007 GTGGCCGACAGGGTAACGGTGCAGTCTGCGGACATTGTGCCGTACCAGATTGATGCAACG 11066 ||||| || | | | || ||||| ||| ||||||| || | |||||||| | Sbjct 19645 GTGGCTGATCGTCTGAAAGTCCAGTCAGCGAGCATTGTGGAATATGAAATTGATGCGGTG 19704 Query 11067 CTTTACATCTATCCGGGGCCGGAAGCTGAACCCGTCCGGCAGGCATCGGAGCAGCAGTTA 11126 || ||||||| ||| ||||||| | || || |||| ||||| | |||||| | | Sbjct 19705 CTGTACATCTTCCCGACGCCGGAATCCGAGCCTATCCGCAAGGCAGCAGAGCAGAAACTG 19764 Query 11127 CAGGCGTATATTACCGCGCAGAATCGCTTAGGGCGCGATATCCGTATTTCTGCTATCTAC 11186 | ||| || |||||| |||| || || || ||||| ||| | || ||||| ||| Sbjct 19765 AAACACTATGTTGAAGCGCAGCATCGTTTGGGACGTGATATTCGTTTGTCAGCTATTTAC 19824 Query 11187 GCCGCCCTGCACGTCGAAGGCGTCCAGCGCGTTGAACTGGC-GCAGCCTGTTGCGGATAT 11245 ||||| ||||| || ||||| |||||||| || || ||| ||| | | | || | Sbjct 19825 GCCGCACTGCATGTGGAAGGTGTCCAGCGTGTGGAGCTGAAAGCACCAT-TGAAAGACGT 19883 Query 11246 CGTGCTGAGTGACTACCAGGCATCGCACTGCACCGAATACACCATAACGGTGGGTGGTTA 11305 || || | | ||||| || | |||||| || ||| | || |||| |||| Sbjct 19884 TGTATTGGATAAAACACAGGCTTCTTATTGCACCAAAACCACACTGACAATGGGAGGTTC 19943 Query 11306 CGATGAGTAATGACTTGTTACCACCCAGCGCCA-GCCGAATGGAGCGCGTCGCCGCGCGC 11364 ||||| | || | | | || | | | |||| | || | | || ||| Sbjct 19944 TGATGAATGATCGCCTTCTGCCGATGGGTTCAACGCCGT-TAGAACTGGCTGCGGCGAAA 20002 Query 11365 GTCTGCGCCTCGTTGGGAGAAGTGCCCG-TGCCATTGCGCCAGTTGTGGAACCCGTGGAC 11423 | ||| ||| |||| ||||| | | |||||||| || ||||||| ||| || Sbjct 20003 GCCTGTGCCGAGTTGC-AGAAGATCAAAATCCCATTGCGGGAGCTGTGGAATCCGGACAC 20061 Query 11424 GTGTCGGGCTGATC--TGCTGCCCTATCTGGCGTGGGCCTTCTCCGTTGATCGCTGGGAT 11481 |||| ||| ||| | ||||| |||||||| ||||| | || || || |||||||| Sbjct 20062 CTGTCCGGC--ATCGTTACTGCCTTATCTGGCATGGGCGTGGTCTGTGGACCGCTGGGAC 20119 Query 11482 GAGGCTTGGCCGATCAGCACGAAACGAAAGGCGGTGGCCGATGCGTTCTAT----CTGCA 11537 || ||| | ||||| ||| | || ||| | | | |||| | ||||| Sbjct 20120 GAAAACTGGTCTGAGAGCACCAAAAG---GGAAGTGATCAAGG-GTTCACTGTTCCTGCA 20175 Query 11538 TAAGCACAAAGGTACTACGGGCGCCATGCGCCGGGTTGTGGAACCGTTCGGCTTCTTCAT 11597 ||| |||||||| || | || ||||| || || || | || ||||| || | |||| Sbjct 20176 TAAACACAAAGGAACGATTGGAGCCATCCGACGAGTGATTGAGCCGTTGGGTTATCTCAT 20235 Query 11598 CCGGGTTAACGAGTGGTGGAA---CATTGATACCGCACCGGGCACCTTCACGCTGGATAT 11654 ||| || || || |||||| | || ||| || || ||||||||| |||||||| Sbjct 20236 CCGCGTAAAGGAATGGTGGCAGACCAACGATGCCCCA---GGCACCTTCCGACTGGATAT 20292 Query 11655 CGGTGTGGAAGACCAGGGCATCAGTGAAGAAACCTATCAGGAGCTTGAACGCCTGATCGC 11714 ||||| ||| || |||| | |||| | | || || ||| |||||| Sbjct 20293 TGGTGTTCTGGACAGCGGTATCACCCATGAAATGTTCGAAGAACTGGAAAACCTGATTTT 20352 Query 11715 CGATGTGAAGCCGTGTAGCCGTCATATGCTGGGAATGTCGCTTCATCTGCAAACAACCGG 11774 ||||| || ||| ||||| ||| || | ||| || | ||||| | ||| || Sbjct 20353 CGATGCAAAACCGGTAAGCCGACATTTGATTGGATTGGACATCAATCTGGATACACGTGG 20412 Query 11775 CGATTTGTATATCGGCGCGGGCAGTTATTCCGGCGATACGCTGACCGTATACCCGTATTT 11834 || | | | || | | || ||| || ||||| || || || ||||| Sbjct 20413 TGAATACCACTACTCAGCAGCAACATACAGCGGTGACGAACTGACAGTTTATCCCTATTT 20472 Query 11835 CCCTGAAACCATAGCCGTGTGCGGTGATGATTACACCGGGGCGGCAATCCATTTAATTGA 11894 || ||| || | || | || || || ||| || ||| | ||||| Sbjct 20473 TCCGGAACAAATCACGGTATCTGGCTCAGAAATTGTGGGCACGGGCATACATATTATTGA 20532 Query 11895 CACCGTGGAGATCGCAAGTGGCG-ACTAAATATTATGCCGTGCTAACCAATGTGGGCGCG 11953 | | || ||| | | | || |||| | ||| |||| || | | ||||| Sbjct 20533 CGACATGAGGATTAGACCATGAGTACCAAATTCTTTGCGTTGCTGACACAGTTAGGCGCA 20592 Query 11954 GCGAAACTGGCAAATGCCACGGCATTGGGTGCGCAGGTTGAGATCACCAAGATGGCTGTA 12013 | ||| |||||||||| ||||| ||||| | | |||| || ||| | ||||| || Sbjct 20593 GATAAATTGGCAAATGCGGCGGCACTGGGTACTAAAATTGAAATTACCCATATGGCCGTT 20652 Query 12014 GGCGATGGTAACGGCGCATTGCCGACACCAAGCCCGGCACAAACGGCGCTGGTTCATGAG 12073 || |||||| ||| |||| || ||| | | |||||| || || |||| Sbjct 20653 GGTGATGGTGGTGGCAGCCTGCCAACGCCAGACACTAAACAAACTAAATTGATTAATGAA 20712 Query 12074 CTGCGACGCGCACCGCTCAATAGCCTGAGCATTGACCCGAATAACGCCAANNNNNNNNNN 12133 ||| || || | | || | |||| ||| || ||||| ||| |||| Sbjct 20713 AAGCGTCGTGCGGCAATTAACACGCTGAACATCGATCCGAAAAACACCAATCAGATTATC 20772 Query 12134 NNNNNNNNNNNNNNNNNNNNNNnnnngggCGGGTGGTGGATTCGTGAAATTGGTCTGTTT 12193 || || |||||||| |||||||| || ||||| Sbjct 20773 GCAGAACAGGTTATTCCTGAAGACGAAGGTGGCTGGTGGATCCGTGAAATCGGCCTGTTC 20832 Query 12194 GATAAAGACGGCGATATGATTGCCGTCGCCAACTGTGCGGAAACCTATAAGCCGCAGTTA 12253 || |||||||||| | ||||||| || | || || || |||||||| ||||| || || Sbjct 20833 GACAAAGACGGCGTTCTGATTGCGGTGGGTAATTGCGCAGAAACCTACAAGCCCCAATTG 20892 Query 12254 CAGGAGGGAAGCGGGCGCGTGCAGGTGGTGCGCATGATTCTGATTGTCAGCAGTACTGCC 12313 || || || ||| || ||| | |||||||| |||||||||||||| | | Sbjct 20893 CAAGAAGGCTCCGGCCGTACCCAGACAATCCGCATGATCCTGATTGTCAGCAGCGCAAAC 20952 Query 12314 GCCGTGACGCTGAAAATTGACCCTTCGGTAGTGCTGGCAACCCGTCAGTACGTTGATAAT 12373 || ||||| |||||| |||| || || || || |||||||| ||| |||| || |||||| Sbjct 20953 GCAGTGACACTGAAAGTTGATCCATCTGTGGTTCTGGCAACGCGTGAGTATGTAGATAAT 21012 >seq2689 Length=1181 Score = 197 bits (218), Expect = 3e-46 Identities = 511/788 (65%), Gaps = 12/788 (2%) Strand=Plus/Minus Query 11575 GTGGAACCGTTCGGCTTCTTCATCCGGGTTAACGAGTGGTGG---AACATTGATACCGCA 11631 || ||||||||||||| || || || ||| || |||||| ||| ||| || Sbjct 1180 GTTGAACCGTTCGGCTATTTAATTCGCCTTATTGAATGGTGGCAGAACGGCGAT---GCG 1124 Query 11632 CCGGGCACCTTCACGCTGGATATCGGTGTGGAAGACCAGGGCATCAGTGAAGAAACCTAT 11691 || ||||||||| |||||||||||| ||| ||| ||||||| |||| |||||| Sbjct 1123 CCCGGCACCTTCCGGCTGGATATCGGCGTGATGGACACCGGCATCACCGAAGCCACCTAT 1064 Query 11692 CAGGAGCTTGAACGCCTGATCGCCGATGTGAAGCCGTGTAGCCGTCATATGCTGGGAATG 11751 || ||||| ||||| ||||| |||| ||| || | ||| ||| || | || ||| Sbjct 1063 CACGAGCTGGAACGGCTGATTTTTGATGCGAAACCCGCTTCCCGCCATCTGATTGGGATG 1004 Query 11752 TCGCTTCATCTGCAAACAACCGGCGATTTGTATATCGGCGCGGGCAGTTATTCCGGCGAT 11811 || |||| ||| |||| ||| ||| | ||| | | ||| ||||||| Sbjct 1003 TCCATTCAGCTGGAAACCGGGGGCACCGCCTATTGTGCCGCAAGTTGCTATGACGGCGAT 944 Query 11812 ACGCTGACCGTATACCCGTATTTCCCTGAAACCATAGCCGTGTGCGGTGATGATTACACC 11871 |||||||| ||||| ||| | | ||| | | |||| || | ||| Sbjct 943 GTCCTGACCGTTTACCCCTATCTGGCGGAATGCCTGACCGTCACTGGCGCGGATGTGGTG 884 Query 11872 GGGGCGGCAATCCATTTAATTGACACCGTGGAGATCGCAAGTGGC--GACTAAATATTAT 11929 || || | || || | ||||| || | ||| | | || || |||||||| | Sbjct 883 GGCGCCGGGATTCACATTATTGATACGATAAGGATTGGA----GCATGAGTAAATATTTT 828 Query 11930 GCCGTGCTAACCAATGTGGGCGCGGCGAAACTGGCAAATGCCACGGCATTGGGTGCGCAG 11989 ||| || ||||| |||| || | |||||| |||||| | || |||| | || Sbjct 827 GCCCTGTTAACCCGACTGGGGGCTGACCGACTGGCGAATGCCGCTGCCCTGGGCACCAAG 768 Query 11990 GTTGAGATCACCAAGATGGCTGTAGGCGATGGTAACGGCGCATTGCCGACACCAAGCCCG 12049 |||| |||||| | ||||| || || || ||| ||| || || || || || Sbjct 767 ATTGAAATCACCCACATGGCGGTCGGGGACGGTGGCGGTCAGTTACCCACGCCGGATACG 708 Query 12050 GCACAAACGGCGCTGGTTCATGAGCTGCGACGCGCACCGCTCAATAGCCTGAGCATTGAC 12109 ||||| || || |||| || || || || | ||| |||||||||||| Sbjct 707 AATCAAACCCAACTCATTAATGAAAAACGCCGGGCGGCGATTAATGTGCTGAGCATTGAC 648 Query 12110 CCGAATAACGCCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNnnnngggCGGGTGG 12169 ||||| ||| | || ||||||||| Sbjct 647 CCGAAGAACACGAACCAGATTATTGCCGAGCAGGTCATCCCGGAGCATGACGGCGGGTGG 588 Query 12170 TGGATTCGTGAAATTGGTCTGTTTGATAAAGACGGCGATATGATTGCCGTCGCCAACTGT 12229 ||||| || ||||| || ||||||||||||||||||| |||| || ||||||||||| Sbjct 587 TGGATACGGGAAATCGGCCTGTTTGATAAAGACGGCGTGCTGATGGCGGTCGCCAACTGC 528 Query 12230 GCGGAAACCTATAAGCCGCAGTTACAGGAGGGAAGCGGGCGCGTGCAGGTGGTGCGCATG 12289 || |||||||| || |||||||| ||||| || ||| ||| ||| | || ||| Sbjct 527 GCTGAAACCTACAAACCGCAGTTGCAGGAAGGCTCCGGCCGCACCCAGACTATCCGTATG 468 Query 12290 ATTCTGATTGTCAGCAGTACTGCCGCCGTGACGCTGAAAATTGACCCTTCGGTAGTGCTG 12349 | |||||||||||| || || |||||||||||||||||||| ||||| |||||| Sbjct 467 GTACTGATTGTCAGCCACACGAATGCGGTGACGCTGAAAATTGACCCGTCGGTGGTGCTG 408 Query 12350 GCAACCCG 12357 || || || Sbjct 407 GCGACACG 400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 107103557284128