Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_029120.1 Length=60875 Score E Sequences producing significant alignments: (Bits) Value seq2692 127 8e-25 seq2774 87.8 7e-13 >seq2692 Length=686 Score = 127 bits (140), Expect = 8e-25 Identities = 259/381 (68%), Gaps = 8/381 (2%) Strand=Plus/Minus Query 25554 ATCCTCGACCAGTTTCTGGATGAAAAGGAAGGTAACCACACCACGGCATACCGTGATGGT 25613 || |||| |||||| |||||||||| || || |||| |||| || || |||| Sbjct 637 ATTCTCGCTCAGTTTTTGGATGAAAAAGAGGGCAACCGATTATCGGCGTATCGGGATGCA 578 Query 25614 GTGGGTATCTGGACCATCTGCCGTGGAGCCACCCGGGTGGATGGTAAGCCTGTGATTCCT 25673 | || |||||||| |||||||| || | ||||| | |||||| || || || Sbjct 577 GCTGGCATCTGGACAATCTGCCGGGGCGTAACCCGAATTGATGGTGCTCCCGTTCGTCAG 518 Query 25674 GGCATGAAGCTGTCGAAGGAAAAATGCGACCGGGTT---AACGCTATCGAACGGGATAAG 25730 || ||| | ||| | | | ||||| || | | ||||| | ||| ||| || Sbjct 517 GGTATGCAACTGACACCGAACCAATGC---CGTGATCTCAACGCCAAAGAAGCAGATCAG 461 Query 25731 GCGCTGGCATGGGTGGCGAAGA-ACATCAGAGTGCCACTGACTGAACCCCAGAAAGCGGG 25789 || | |||||||| |||| | || | ||||||||||||||||| |||| ||| || Sbjct 460 GCCGTTGCATGGGTCA-GAAGCCATATTAACGTGCCACTGACTGAACCACAGATAGCCGG 402 Query 25790 TATTGCGTCATTCTGTCCTTACAACATTGGCCCCGGTAAGTGTTTCCCGTCGACGTTTTA 25849 ||||| ||||| || |||||||| |||||||||| || ||| | || ||||| || Sbjct 401 CATTGCCAGTTTCTGCCCATACAACATCGGCCCCGGTAGATGCTTCTCTTCCACGTTCTA 342 Query 25850 TAAACGAATTAATGCAGGTGATCGAAAAGGTGCCTGCGAAGCGATTCGCTGGTGGATTAA 25909 | | | ||||| |||||| | |||| || || | | ||| | ||||| Sbjct 341 CCGAAAACTGAATGCGGGTGATAGGCAAGGGGCTTGTCAGGAAATTAAACGCTGGATATT 282 Query 25910 GGACGGTGGCAGAGACTGCCG 25930 ||||| |||||||| ||||| Sbjct 281 TGACGGCGGCAGAGATTGCCG 261 >seq2774 Length=20939 Score = 87.8 bits (96), Expect = 7e-13 Identities = 202/300 (67%), Gaps = 11/300 (4%) Strand=Plus/Minus Query 26324 TTTATGTG--GTTAACCATAACGGCGAACCATACGTTCCCATGAAACCTGTCGTTGCGGG 26381 ||||||| || ||||| | || | ||||||||||| ||||||||| || ||| | Sbjct 535 TTTATGTATCGTAAACCACGAAGGTAAGCCATACGTTCCAATGAAACCTATCATTGAAGA 476 Query 26382 GATGGGGCTGGCCTGGCAATCACAGTTGGCTAAGTTAAGACAGCGTTTTGCGTCAAC-TA 26440 ||||| | | ||| || ||||| ||||| ||| | | || ||| || || || Sbjct 475 TATGGGTTTAGATTGGGCGTCGCAGTTTACTAAGCTAAAAAAACGCTTTA-GTAAAGGTA 417 Query 26441 TAACGGAAATCGTTATGGTTGCTGAGGATGGGAAACGACGCAAT--ATGGTGTCCCTGCC 26498 | |||||||| || | | | | || | ||||| ||| | | ||| | Sbjct 416 TTGTGGAAATCGCAATACCTTCGAAAGGCGGTGA-----GCAATCAATGATTTGCCTAGC 362 Query 26499 GCTTCGAAAACTTGCAGGCTGGTTACAAACCATCAATCCCAACAAAGTAAAACCCGAAAT 26558 | | ||| | |||| |||||| | | || | || |||||||| || || ||||| Sbjct 361 AATGCATAAATTATCAGGTTGGTTATATTCAATAATGCCTAACAAAGTTAAGCCTGAAAT 302 Query 26559 CCGCGGCAAGGTAATCCAGTATCAGGAAGAGTGTGACGATGTTCTCTATGAATACTGGAC 26618 ||| | ||| ||||||||||| || ||||| || ||||| || || ||||| || ||||| Sbjct 301 CCGAGACAAAGTAATCCAGTACCAAGAAGAATGCGACGACGTACTTTATGAGTATTGGAC 242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 194671778987616