Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq2162 118 7e-22 seq2252 93.3 3e-14 >seq2162 Length=74254 Score = 118 bits (130), Expect = 7e-22 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||||||||| || ||||||||||| ||||||||||| | ||||| || | | Sbjct 48870 AATGCAGATTTTCGTGAAGACCCTCACGGGCAAAACGATCACATTGGAAGTCGAGGGCTC 48929 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || | | |||| | ||| || ||| ||||||||||| | || |||||||| Sbjct 48930 TGATTCGATCGAAAACGTCAAAGCTAAGATTCAAGACAAAGAAGGAATCCCCCCAGATCA 48989 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| || || ||||| || || ||||| || || | |||||||| | || || || Sbjct 48990 GCAGCGATTGATCTTTGCTGGGAAGCAACTTGAGGATGGCCGCACTTTGAGTGACTATAA 49049 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| ||||| || || || Sbjct 49050 CATCCAAAAGGAATCGAC 49067 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| ||||| ||||| | || ||||| || ||||||||||| ||||| | Sbjct 48642 AATGCAGATCTTCGTGAAAACGTTGACAGGAAAGACCATCACTCTCGAGGTTGAAGGATC 48701 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||| | | || | | ||| || ||| ||||||||||| | || |||||||| Sbjct 48702 TGACTCCATCGAGAACGTGAAAGCTAAGATTCAAGACAAAGAAGGAATTCCCCCAGATCA 48761 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| ||| | || || ||||| || |||||||| || | ||||| || |||| || || Sbjct 48762 ACAACGTCTTATCTTCGCCGGAAAGCAACTGGAGGATGGCCGCACCTTGAGCGACTATAA 48821 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||| || || |||||||| | || | ||| | | | ||||||||| Sbjct 48822 CATCCAGAAGGAGTCCACTCTCCACCTTGTTCTTCGCCTCCGAGGAGGA 48870 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || || || || |||||||||||||| || || || | Sbjct 49099 ATGCAGATCTTTGTCAAGACTCTGACAGGCAAAACGATCACTCTTGAGGTCGAGGGTTCT 49158 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||||| | ||| || || ||||| ||||| | || || || || Sbjct 49159 GACACCATTGAAAACGTGAAAGCTAAGATCCAAGACAAGGAAGGAATTCCTCCCGACCAG 49218 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || ||||| ||||| || ||||||| | |||||||| | || |||||| Sbjct 49219 CAGCGGCTGATCTTTGCTGGCAAGCAGTTGGAAGATGGCCGCACTTTGAGTGACTACAAC 49278 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 || || || |||||||| | || | ||| | | | ||||||||| Sbjct 49279 ATCCAGAAGGAGTCCACTCTCCACCTTGTTCTCCGACTTCGAGGAGGA 49326 >seq2252 Length=1130325 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || |||||||||||||| || ||||| ||||| || || || | Sbjct 563966 ATGCAAATCTTCGTCAAGACCCTCACGGGAAAGACCATCACCCTCGAGGTCGAAGCCTCT 563907 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| | |||| | || || || ||||| || || | || || ||||| Sbjct 563906 GACACTATCGAAAACGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCTCCCGATCAG 563847 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || || ||||| || || || || || | ||||| | |||| |||||| Sbjct 563846 CAGCGCCTGATCTTCGCCGGAAAGCAGCTCGAGGATGGTCGCACCCTCAGCGACTACAAC 563787 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 || || || || || || | ||| |||| Sbjct 563786 ATCCAGAAGGAATCGACCCTTCATCTAGT 563758 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || |||||||||||||| || ||||| ||||| || || || | Sbjct 563157 ATGCAAATCTTTGTCAAGACCCTCACGGGAAAGACTATCACCCTCGAGGTCGAAGCCTCT 563098 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || ||||| || || | || ||||| || Sbjct 563097 GACACCATCGAGAACGTCAAGGCTAAGATCCAAGACAAGGAGGGAATTCCCCCAGACCAG 563038 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| || || || ||||| || || ||||||| | ||||| | | || |||||| Sbjct 563037 CAGCGCTTGATCTTCGCCGGAAAGCAGTTGGAAGATGGCCGCACCCTCAGTGACTACAAC 562978 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || || ||||| Sbjct 562977 ATCCAGAAGGAATCCAC 562961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337997801774912