Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq2252 165 2e-35 seq2162 159 8e-34 seq1859 107 5e-18 seq1739 98.7 2e-15 seq2318 89.7 1e-12 >seq2252 Length=1130325 Score = 165 bits (182), Expect = 2e-35 Identities = 169/221 (76%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | || || || ||||| || ||||| || |||| ||||| |||| |||||| Sbjct 563518 CGAAGGCGGAGAACCAGATGGAGCGTAGATTCCTTCTGGATGTTGTAGTCGGACAAAGTG 563577 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | ||||| || |||||||| || |||||||| || || || ||||| || ||||| || Sbjct 563578 CGGCCATCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCTGGGGGAATTCCC 563637 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 ||||||||||||||||| ||| || ||||||||||| |||| ||| || || | Sbjct 563638 TCCTTGTCTTGGATCTTAGCCTTGACGTTCTCGATGGTGTCAGAGGCTTCGACCTCGAGG 563697 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| ||||| || |||||||| || | ||| | |||||| Sbjct 563698 GTGATGGTCTTTCCGGTCAAAGTCTTCACGAAGATTTGCAT 563738 Score = 145 bits (160), Expect = 2e-29 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||| || |||||||| || |||| ||||| |||| |||||| | ||||| Sbjct 562215 AGGACGAGGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAAAGTGCGGCCATCC 562274 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| || || || ||||| || || || || ||||| || Sbjct 562275 TCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCTGGGGGGATGCCCTCCTTATCC 562334 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||||||||| ||| || || |||||||| || || || || | ||||| ||| Sbjct 562335 TGGATCTTTGCCTTGACGTTCTCAATGGTGTCCGAACCCTCGACCTCCAGGGTGATGGTC 562394 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || || ||||||||||| | ||| | |||||| Sbjct 562395 TTTCCGGTCAAAGTTTTCACGAAGATCTGCATT 562427 Score = 140 bits (154), Expect = 8e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| || || || || ||||| || |||| ||||| |||| |||||| | |||||| Sbjct 563174 AGGACGAGATGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGACAAAGTGCGGCCATCT 563233 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | |||||| || |||||||| | || || ||||| || ||||| ||||| || ||| Sbjct 563234 TCCAACTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCTGGGGGAATTCCTTCTTTATCT 563293 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| |||||| |||||| || || || || || || | ||||| ||| Sbjct 563294 TGGATCTTGGCCTTCACGTTTTCGATAGTATCAGATCCCTCGACCTCCAGGGTGATGGTC 563353 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || |||||||| || | ||| | |||||| Sbjct 563354 TTTCCGGTCAAAGTCTTCACGAAGATTTGCAT 563385 Score = 125 bits (138), Expect = 2e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || ||||| || |||||||| || |||| ||||| || | || | |||||| Sbjct 562946 AGAACGAGGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCACTGAGGGTGCGGCCATCT 563005 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | |||||| || |||||||| | || || ||||| || ||||| || ||||||||| Sbjct 563006 TCCAACTGCTTTCCGGCGAAGATCAAGCGCTGCTGGTCTGGGGGAATTCCCTCCTTGTCT 563065 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || ||||||||||| |||| ||| || || | ||||| ||| Sbjct 563066 TGGATCTTAGCCTTGACGTTCTCGATGGTGTCAGAGGCTTCGACCTCGAGGGTGATAGTC 563125 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || ||||| | || || | || | |||||| Sbjct 563126 TTTCCCGTGAGGGTCTTGACAAAGATTTGCAT 563157 Score = 104 bits (114), Expect = 6e-17 Identities = 110/145 (76%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 ||| || || ||||| || ||||| ||||| || ||||| ||||| ||||| |||||||| Sbjct 562558 CTTACCGGCAAAGATGAGACGTTGCTGGTCTGGGGGAATTCCTTCTTTGTCCTGGATCTT 562617 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 ||||||| ||||||||||| ||| ||| || || | ||||| |||||||| || Sbjct 562618 GGCCTTCACATTCTCGATGGTGTCGGAGCCTTCGACCTCGAGGGTGATGGTCTTGCCAGT 562677 Query 225690 CAAAGTTTTTATGAACACTTGCATT 225714 | || || | ||| | ||||||| Sbjct 562678 GAGGGTCTTGACGAAGATTTGCATT 562702 >seq2162 Length=74254 Score = 159 bits (176), Expect = 8e-34 Identities = 159/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||||| || ||||||||||||||||| || || |||| ||||| || |||||| Sbjct 49319 CGAAGTCGGAGAACAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCACTCAAAGTG 49260 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | |||||||| | |||||| ||||| ||||| || || || |||||||| ||||| ||| Sbjct 49259 CGGCCATCTTCCAACTGCTTGCCAGCAAAGATCAGCCGCTGCTGGTCGGGAGGAATTCCT 49200 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 ||||||||||||||||| ||||| ||| |||||||| || || || || | Sbjct 49199 TCCTTGTCTTGGATCTTAGCTTTCACGTTTTCAATGGTGTCAGAACCCTCGACCTCAAGA 49140 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTT 225698 |||||||| ||||| |||| ||| || Sbjct 49139 GTGATCGTTTTGCCTGTCAGAGTCTT 49114 Score = 147 bits (162), Expect = 5e-30 Identities = 167/224 (75%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | || || ||||| || || ||||| || |||| ||||| ||| |||||| Sbjct 48635 CGAAGGCGAAGAACTAGGTGAAGCGTCGATTCCTTCTGGATGTTGTAGTCGCTCAAAGTG 48576 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | |||||||| |||||||| ||||||||||| |||| || ||||| || || || || Sbjct 48575 CGGCCATCTTCGAGCTGCTTTCCAGCGAAGATGAGTCTCTGCTGGTCAGGAGGGATGCCC 48516 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| |||||||| |||||| || |||| |||||| || || || | Sbjct 48515 TCCTTGTCCTGGATCTTCGCCTTCACGTTCTCAATGGAGTCTGAACCCTCAACCTCAAGG 48456 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||||||||||||||| | || || | ||| | |||||| || Sbjct 48455 GTGATCGTCTTGCCCGTAAGCGTCTTCACGAAGATTTGCATCTT 48412 Score = 145 bits (160), Expect = 2e-29 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || ||||||||||||||||| || || |||| || || ||| ||| || | ||||| Sbjct 48854 AGAACAAGGTGGAGAGTGGACTCCTTCTGGATGTTATAGTCGCTCAAGGTGCGGCCATCC 48795 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || ||||| || ||||||||||| |||||||| || || ||||| ||||| |||||| Sbjct 48794 TCCAGTTGCTTTCCGGCGAAGATAAGACGTTGTTGATCTGGGGGAATTCCTTCTTTGTCT 48735 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||||| ||||||| ||| || ||| || || | ||||| ||| Sbjct 48734 TGAATCTTAGCTTTCACGTTCTCGATGGAGTCAGATCCTTCAACCTCGAGAGTGATGGTC 48675 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || || ||||| ||||| | ||| | |||||| Sbjct 48674 TTTCCTGTCAACGTTTTCACGAAGATCTGCATT 48642 Score = 132 bits (146), Expect = 1e-25 Identities = 147/196 (75%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 225519 GGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGC 225578 ||| || || |||| ||||| || |||||| | |||||||| | |||||| || || Sbjct 49652 GGACTCCTTCTGGATGTTGTAGTCACTCAAAGTGCGGCCATCTTCCAACTGCTTTCCGGC 49593 Query 225579 GAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCAC 225638 ||||||||| |||||||| || || ||||| ||||||||||| |||||||| |||||| Sbjct 49592 GAAGATAAGACGTTGTTGATCTGGGGGAATTCCTTCCTTGTCCTGGATCTTAGCCTTCAC 49533 Query 225639 AGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTT 225698 | ||||| | || || ||| || || | ||||| ||||| || ||||| ||||| Sbjct 49532 ATTCTCGATCGAATCGGATCCTTCAACCTCGAGAGTGATGGTCTTTCCGGTCAACGTTTT 49473 Query 225699 TATGAACACTTGCATT 225714 | ||| | |||||| Sbjct 49472 CACGAAGATCTGCATT 49457 Score = 116 bits (128), Expect = 9e-21 Identities = 159/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | ||||| | ||| || || ||||| ||||||| || || || |||||| Sbjct 49091 CGAAGACGGAGGACCAAGTGAAGCGTCGATTCCTTTTGGATGTTATAGTCACTCAAAGTG 49032 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | ||||| || || ||||||||||| ||||| | ||| || || || || || || ||| Sbjct 49031 CGGCCATCCTCAAGTTGCTTCCCAGCAAAGATCAATCGCTGCTGATCTGGGGGGATTCCT 48972 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 || |||||||| ||||| || || |||||| | || ||| || || || || Sbjct 48971 TCTTTGTCTTGAATCTTAGCTTTGACGTTTTCGATCGAATCAGAGCCCTCGACTTCCAAT 48912 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 |||||||| |||||||| | || || | ||| | |||||| Sbjct 48911 GTGATCGTTTTGCCCGTGAGGGTCTTCACGAAAATCTGCATT 48870 >seq1859 Length=77309 Score = 107 bits (118), Expect = 5e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 ||| || |||||||| || || || ||||| ||||| || |||||||||||||| ||||| Sbjct 72681 CTTACCTGCGAAGATGAGGCGCTGCTGGTCAGGCGGGATTCCTTCCTTGTCTTGAATCTT 72622 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 |||||| ||||| ||||| |||| ||| || || | ||||||||| || ||||| Sbjct 72621 GGCCTTCACGTTCTCGATCGTGTCGGAGGCTTCGACCTCGAGCGTGATCGTTTTACCCGT 72562 Query 225690 CAAAGTTTTTATGAACACTTGCAT 225713 | ||||| | ||| | ||||| Sbjct 72561 GAGGGTTTTGACGAAGATCTGCAT 72538 >seq1739 Length=92152 Score = 98.7 bits (108), Expect = 2e-15 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 ||| |||||||| || || || |||||||| || || || ||||||||||| |||||||| Sbjct 75396 CTTACCAGCGAAAATCAGACGCTGTTGGTCTGGAGGGATCCCTTCCTTGTCCTGGATCTT 75337 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 ||| || |||||||||||| || || || || | ||||| ||||| ||||| Sbjct 75336 GGCCTTGACGTTTTCGATGGTGTCGCTGGCCTCGACCTCCAGGGTGATGGTCTTCCCCGT 75277 Query 225690 CAAAGTTTTTATGAACACTTGCATTTT 225716 | ||||| | ||| | |||||| || Sbjct 75276 AAGGGTTTTGACGAAGATTTGCATGTT 75250 Score = 84.2 bits (92), Expect = 5e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 ||| || || ||||| || || || ||||| || || || |||||||||||||| ||||| Sbjct 75671 CTTACCGGCAAAGATCAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTGTCTTGAATCTT 75612 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 ||| ||| ||||| ||||| || ||| || || | ||||| |||||||| || Sbjct 75611 GGCCTTGACATTCTCGATTGTGTCGCTGGCTTCGACCTCCAGGGTGATGGTCTTGCCAGT 75552 Query 225690 CAAAGTTTTTATGAACACTTGCAT 225713 || || || | ||| | ||||| Sbjct 75551 CAGCGTCTTGACGAAGATCTGCAT 75528 Score = 84.2 bits (92), Expect = 5e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 ||| || || ||||| || ||||| || || || || || ||||||||||| |||||||| Sbjct 76771 CTTACCGGCAAAGATGAGGCGTTGCTGATCTGGAGGGATGCCTTCCTTGTCCTGGATCTT 76712 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 ||| ||| ||||| ||||| || ||| || || | ||||| |||||||| || Sbjct 76711 CGCCTTGACATTCTCGATCGTGTCGCTGGCTTCGACCTCCAGGGTGATGGTCTTGCCGGT 76652 Query 225690 CAAAGTTTTTATGAACACTTGCAT 225713 | ||| || | ||| | ||||| Sbjct 76651 GAGAGTCTTGACGAAAATCTGCAT 76628 >seq2318 Length=474513 Score = 89.7 bits (98), Expect = 1e-12 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 ||| || || ||||| || || || ||||| || || || || ||||| || |||||||| Sbjct 465023 CTTACCGGCAAAGATCAGGCGCTGCTGGTCTGGGGGGATTCCCTCCTTATCCTGGATCTT 464964 Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 ||| ||| ||||||||||| |||| || || || | ||||| || ||||| || Sbjct 464963 GGCCTTGACATTCTCGATGGTGTCAGAGGCCTCGACCTCGAGGGTGATGGTTTTGCCGGT 464904 Query 225690 CAAAGTTTTTATGAACACTTGCAT 225713 |||||| || | ||| | ||||| Sbjct 464903 CAAAGTCTTGACGAAAATCTGCAT 464880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192487440067616