Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_030909.1 Length=50183 Score E Sequences producing significant alignments: (Bits) Value seq2546 134 4e-27 >seq2546 Length=22922 Score = 134 bits (148), Expect = 4e-27 Identities = 272/397 (69%), Gaps = 10/397 (3%) Strand=Plus/Plus Query 31268 CCGAGCAGTTCCAGGTTCTTCACCTTGTCCGGCCATTTGATCTTCTTGAGGATTCCGACC 31327 || |||| ||| |||||||| ||||||||||||||||||||||||||||| | |||||| Sbjct 21861 CCCAGCAATTCAAGGTTCTTAACCTTGTCCGGCCATTTGATCTTCTTGAGTACCCCGACC 21920 Query 31328 GCCGCGCGGGAGTCGCCCTTGCCCTCGAACATCTCGGCCAGGTCGAAGCCGCTGAGGTAC 31387 |||| |||||| ||| ||||||||||| ||||| | ||| ||||| | ||| Sbjct 21921 ATATCGCGCTCATCGCCCCGGCCTTCGAACATCTCCGCCAGATTGAACCCGCTTAAATAC 21980 Query 31388 TGGCGCCAGGCCTTGGGCCACTGGCTCAGCGGGCGCAGGGTCAGGTCATCATTGACAATG 31447 | ||||| | | ||||| ||| | ||| | | ||||||| | | | |||| Sbjct 21981 CGTCGCCATGATTCCGGCCATTGGGATAACGGCTTAATGCTCAGGTCTTGTTCCAGAATG 22040 Query 31448 TCCAGGAGGTCCATCTGATCGATCTCCTCCAGGCGCCGGACGACGTAGTCGGCGTC--GG 31505 || | ||||||||| ||||| || | |||||| | |||||| || || | Sbjct 22041 TCAGCCACGTCCATCTGGTCGATTTCAACGAGGCGCATCAGTACGTAGCTCGCATCAATG 22100 Query 31506 ACCTGGTGC--GCTCGGAGCGCTGCTTCATAGCCTCCTGGAT-GGCGGATGTGATGTCCG 31562 || | ||| | | | ||| |||| ||| | || || || | | || | Sbjct 22101 CCCAGTTGCTTATTACGTTC-CTGTTTCA---GCTCATCAATACGCTGA-ATAACGTGGG 22155 Query 31563 GCTTCTGCAGCAGTTGGTAACCGATCTCGGACGCGCGATTCTTGCTGTACCCGGCCCTGA 31622 ||||||||| | || || || ||||| ||||||||| |||||||||| || |||| Sbjct 22156 GCTTCTGCATTAACTGATAGCCAATCTCACTCGCGCGATTGGTGCTGTACCCAGCTCTGA 22215 Query 31623 TTGCCGCCTGGGTCGCATTGAGGTCGAGCAGGTACTC 31659 | ||||| || || | || | |||| ||| ||||| Sbjct 22216 TCGCCGCTTGTGTAACGTTTAAATCGACCAGATACTC 22252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160458542619360