Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_030919.1 Length=42418 Score E Sequences producing significant alignments: (Bits) Value seq2599 190 6e-44 seq2774 114 4e-21 seq2561 102 2e-17 >seq2599 Length=15424 Score = 190 bits (210), Expect = 6e-44 Identities = 368/533 (69%), Gaps = 10/533 (2%) Strand=Plus/Plus Query 19938 CAGCATGACTGGCTTAATGGGTGGCTTGAGCTATGGGGGGCATGGGTTTATTCGGGTCGT 19997 ||||| |||||| || || ||| | | | ||||||||||||||| | || | Sbjct 11627 CAGCAGGACTGGATTGATAACTGGTTAAATTTGTGGGGGGCATGGGTTCACAGTGGCAGA 11686 Query 19998 CTGGAAAAGCGCATGAGCAGCGTAATAGCGAAGTTCATGGAGAGCGTAGAGCCGGG-AAG 20056 | || |||||| || | | | || ||||||||| || || ||||| | ||| Sbjct 11687 ATCGATAAGCGCCAGATAAACATGATTTATAAGTTCATGATGACTGTTGAGCCTCGCAAG 11746 Query 20057 AGTTATGACAAGACCAATGTGCAATGATGATGATGGAATGTTGATTTCTCAGGTCGTCGA 20116 | | ||| | || ||||||||||||||||||| ||||||||||||||||| ||||| Sbjct 11747 GGGCAAGACC-GCCCTGTGTGCAATGATGATGATGGTATGTTGATTTCTCAGGTGGTCGA 11805 Query 20117 TTCCGTCATGTACATTGACAAGAAAGCCTTTGGCATCCTCCTCAGCTACTACGCTCATGG 20176 | |||| |||| ||||||| | ||||||| ||| || | ||||||||||||||||| || Sbjct 11806 TGCCGTTATGTGCATTGACCAAAAAGCCTATGGGATTTTACTCAGCTACTACGCTCACGG 11865 Query 20177 TTCATCCAAGCGAGCAATTGCATCCTACTATCACGCGACTGCAAAGCCACGCAAGATG-T 20235 |||| |||| ||||| || | || |||||| || ||| || || |||| ||| | Sbjct 11866 CGCATCGAAGCTGTCAATTTCAACTTATTATCACAAGATTGCGAAACCCCGCAGAATGAT 11925 Query 20236 GTGGACGGGGTGGCGATGGATGGAGAAAACCTTCACTGGCAACCTGTAGAAATGAAATTG 20295 | | || ||||| | | || || ||||| | | || ||| | |||| | | Sbjct 11926 GACG-CGCTCTGGCGGGCGCTTAAGGAAGCCTTCTCGTGGGACATGTCGCCGTGAAGTGG 11984 Query 20296 ACGACATCCTGAAAGCGTCATTATTT--GTTTTATACCAGCCAATGCAAAATGCTTTCAA 20353 | || || ||| ||| || | ||| | ||||| ||||| |||||||||| || || Sbjct 11985 ATGAAATTCTGGCAGC--CAGTGTTTACCTATTATATCAGCCTCTGCAAAATGCATTTAA 12042 Query 20354 AATGCGTAAACGTGTTGAGAAAGTTAAGCATGTTGCTGTTAAAAGTCTTGACATGCAATT 20413 ||||||||||| |||||| | || | |||| | || || |||||| ||| Sbjct 12043 TTCACGTAAACGTGTAGAGAAAATCAAAAAGATTGC-CTAGAACGTGTTGACA-CTAATG 12100 Query 20414 ATCCATTTAGCCATAATTAGAGGGTAAGCTGCCGTTAGTGACTCTTAAGTTGC 20466 | | | | ||| |||||| || | | |||||| |||| ||||| || || Sbjct 12101 AGCAAATGAGCAATAATTTTTGGTAAGGTTGCCGTCAGTGTTTCTTAGGTGGC 12153 Score = 82.4 bits (90), Expect = 2e-11 Identities = 214/324 (66%), Gaps = 2/324 (1%) Strand=Plus/Plus Query 18587 ATGAAAACATACCGAATAAAATTGCCGTGGCCTCCTTCAAACAACCGATATTGGCGACAC 18646 ||||| || ||||| ||||| |||||||||| || ||| || | |||||| |||| Sbjct 11039 ATGAAGACTTACCGCTTAAAACTGCCGTGGCCGCCGACAATTAATCATTATTGGAAACAC 11098 Query 18647 TCAAGAGGGATCCACTACATCAGCGATTGGGGAAAGCGATACCGGCGAGAAG-TAATCGA 18705 ||||| || |||||||||| || ||| || ||||| | |||| | ||| Sbjct 11099 TCAAGGTGGGGTCACTACATCACAGAGAAGGGCAAAGATTACCGAC-AGAACATCATCAC 11157 Query 18706 AATAATTCAGCAACAACAGCTAGACCTTAAAATCACACCCCGCATCAGAATCACCATTCT 18765 | | || |||| || | ||||| | | | | ||||||||||||| || || Sbjct 11158 ACTCATCAAGCAGCAGGACTTAGACATCCTCACCCCCTCCCGCATCAGAATAACAATCAC 11217 Query 18766 CGCAGCACCTCCCGATAACCGCAAACGCGACCTGGACAATCTACCAAAGGCCGTTTTTGA 18825 ||| ||||| || ||| | | || | || || || || || || || || || Sbjct 11218 TGCACACCCTCCAGACCGACGCCGAAGAGATATCGATAACCTGCCCAAAGCGGTCTTCGA 11277 Query 18826 CGCACTCACTAGTGCGGGCTTCTGGCTGGATGACGGCCAGATAGACGATATGCGCATCAA 18885 | |||| || ||| |||||| | ||||| | ||||| || |||||||| |||| Sbjct 11278 CTCACTGACACATGCCCATTTCTGGGTTGATGATGAGCAGATTGATGATATGCGGATCAC 11337 Query 18886 GCGCTGTCAGGCGGTTAAAGGCGG 18909 ||| | | | |||||||||| Sbjct 11338 GCGGGGCGAATTGATTAAAGGCGG 11361 >seq2774 Length=20939 Score = 114 bits (126), Expect = 4e-21 Identities = 71/76 (93%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 20486 GGGTCAGTCGTATAAAGGTCATTACGGAAGGCTGTTAACCTTCTTATCGTGGTTCGAGTC 20545 |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| || Sbjct 20146 GGGTTAGTCGTATAAAGGTTATTACGGAAGGCTGTTAACCTTCTTATCGTGGTTCGATTC 20087 Query 20546 CACGCTGTCCAGCCAA 20561 |||||| ||| ||||| Sbjct 20086 CACGCTATCCCGCCAA 20071 >seq2561 Length=11062 Score = 102 bits (112), Expect = 2e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 39478 ATGCATCCCACTGAAGAAACTTAACGGCTGGCTGTTCAGCATTAACCCTGAGAAAGTTCG 39537 ||| || || ||||| |||||||| |||||||||||||| |||||||| | ||||||| Sbjct 10797 ATGTATTCCGCTGAAAAAACTTAATGGCTGGCTGTTCAGTATTAACCCCGCGAAAGTTAA 10738 Query 39538 TGCAGACATCCGTGACAAACTGATTAAGTACCAGGAAGAATGCTTCACCGTTCTGTATGA 39597 ||| ||| || | ||||| | | |||| ||||||||||| || | | ||| |||| Sbjct 10737 AGCAAGCATTCGCAATAAACTCACTCAGTATCAGGAAGAATGTTTTATTGCCCTGCATGA 10678 Query 39598 TTACTGGACGAAAGGT 39613 || ||||| || ||| Sbjct 10677 CTATTGGACCAAGGGT 10662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 135611387699840