Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_030929.1 Length=49033 Score E Sequences producing significant alignments: (Bits) Value seq348 140 1e-28 >seq348 Length=55286 Score = 140 bits (154), Expect = 1e-28 Identities = 218/306 (71%), Gaps = 18/306 (6%) Strand=Plus/Minus Query 31448 GCGCGCGGCGACGTTCCTCGCCCAGGTCGGCCACGAAAGCGGCCAGT-TGACCCGCTTGG 31506 ||| | ||| ||||||| |||||||| ||||||||| |||| || ||||||| | Sbjct 27163 GCGGGTGGCAGCGTTCCTGGCCCAGGTTGGCCACGAAT-CGGCGAGCCTGACCCGGACCG 27105 Query 31507 TGGAGAACCTCAACTACAGTGCCCGTGGCCTGGCTGCGACCTGGCCGAGCCGGTACCTCG 31566 | |||||||| |||||| | || | ||| |||| | |||||||| ||||| ||| || Sbjct 27104 TCGAGAACCTGAACTACGGGGCGCAGGGCATGGCCGACACCTGGCCCAGCCGCTACGCCG 27045 Query 31567 GCG--CCGACGGCCA----------GCCCAACGCCCTGGCGCAGCGC-CTGGCGCGCAAC 31613 | || | ||||| ||| |||| ||||||| |||| |||| |||||| Sbjct 27044 TTGACCCCAAGGCCAAGCCGAGGAAGCCGAACGAACTGGCGC-GCGCGCTGGAGCGCAAG 26986 Query 31614 CCCCGAGCCATCGCCAACAACGCCTACGCCTCGCGCAACGGCAATGGCGACGAGGCATCG 31673 || ||| |||| |||||||||||||||| ||| ||||| ||| ||||||| Sbjct 26985 CCGGTAGCGATCGGCAACAACGCCTACGCCAACCGCCTGGGCAACGGCTCCGAGGCAAGC 26926 Query 31674 GGCGACGGCTGGCGGTACCGCGGGCGCGGGCTGCTGCAGATCACCGGCCGGGCGAACTA- 31732 |||||||||| || | ||| || || || | | |||| ||| ||||| || ||||| Sbjct 26925 GGCGACGGCTACCGATTCCGTGGCCGTGGCCCAATCCAGAACACTGGCCGCGCCAACTAT 26866 Query 31733 -CCGCG 31737 ||||| Sbjct 26865 GCCGCG 26860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 156778667776160