Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_030931.1 Length=41871 Score E Sequences producing significant alignments: (Bits) Value seq348 702 0.0 >seq348 Length=55286 Score = 702 bits (778), Expect = 0.0 Identities = 1134/1642 (69%), Gaps = 65/1642 (4%) Strand=Plus/Minus Query 22380 GGAGGCGCGGTGCGTGATTACGTCAAAATCGCCCTCGACTATGCCAAAGCAGCAATCGCC 22439 ||| || | ||||||||||||||| |||||| | |||||| ||| || | ||| Sbjct 24676 GGAAGCCCCGTGCGTGATTACGTCGGCATCGCCACGGCCTATGCAGAAGAGGCCGTAGCC 24617 Query 22440 GATAAGAGTCGTAAGAAGCATGGTCTACTGATACGTCAGGCTGCAAAGCGGTTTGTCGAC 22499 || |||| | |||| || | | |||| ||| || || ||||| | | Sbjct 24616 GACAAGAAGGGCCGGAAGTTCGGGAAGTGGGTGCGTCTGGCCGCGAAACGGTTCCTTGCG 24557 Query 22500 GATCTGAAGCGGGCGAAAAAGAAGTCTTGTCCGTTCTTCTTCGATGAGTGGCATGCCAAC 22559 || |||||||| |||| |||| | ||||| | ||||| |||||||| || | Sbjct 24556 GACCTGAAGCGAGCGAGGCGGAAGCGTCCGCCGTTTGTTTTCGACGAGTGGCACGCTTGC 24497 Query 22560 GATGCATGCGAATTCATCGAGAAGCTGCCCCACGTCGAGGGGAAGTGGGATACGCCTACG 22619 || | ||||| ||||||||||||||||| |||||||| || ||||||| |||| | Sbjct 24496 GACCCTTGCGACTTCATCGAGAAGCTGCCGCACGTCGAAGGAAAGTGGGCGCGGCCTGAG 24437 Query 22620 ATCGTTATGCACCCGTCGCACGTCTTCTTTGTCGTGCAGCTCTTCGGGTTCCGCAAGCGC 22679 |||| |||| | ||| || || ||||| ||||||||||| |||||||||||||| | Sbjct 24436 ATCGAGCTGCATCGGTCACATGTGTTCTTCGTCGTGCAGCTGTTCGGGTTCCGCAACC-- 24379 Query 22680 GAGTGGATTCAGGTAGATGGCTGGTCCGACGACGGCCGGTTCTATCCGCGCCGATTCACA 22739 ||| ||| | || || || ||||| Sbjct 24378 ---------------------TGG----ACGGCAGCAGG------------CGCTTCACC 24356 Query 22740 TCGGCCCTGTTCGCGGTGGCCAGGAAGAACGCCAAGAGCACCTTGTCTTCAAGCATTCTG 22799 ||||| |||||||||||||| | ||||| |||||| ||| || | || || ||| Sbjct 24355 TCGGCTCTGTTCGCGGTGGCGCGCAAGAATGCCAAGTCGACCCTGGCAGCAGCGATCCTG 24296 Query 22800 CTGTACTGCGAATGCTGCGAGCCGGAGGAGGGCGCTCAGGTAATCAGCGCGGCGACGACG 22859 || |||||| | ||||||||| |||||||||||| ||| | ||| ||||| || || Sbjct 24295 CTTTACTGCCAGTGCTGCGAGGAGGAGGAGGGCGCCCAGATCATCTCGGCGGCCACCACC 24236 Query 22860 TTTCCACAAGCTAGCATCATCTTCAATGTTGCAAAGCGCATGGTTGAAAAGACCCCAGCG 22919 || || ||||||||||||| || || ||||| ||| || ||||| || | Sbjct 24235 GGCAGCCAGGCGCGCATCATCTTCAACGTCGCCAAGCGGATGACGGAGAAGACACCGGAC 24176 Query 22920 CTGCGCGAGGCCTTCGGCCTGGAGACGTGGGCTAAGGCGATCACTCGTTTCGAGACGGGC 22979 |||| ||||| |||||| ||| ||||| || |||||| || | ||||| || Sbjct 24175 CTGCAGGAGGCTTTCGGCTTGGCCTGCTGGGCCAACTCGATCAGCCGGATGGAGACCGGG 24116 Query 22980 GCCACCTTCAAGCCGATTCACGCGAAGGCCAGCACGCAGGACGGTCTGAACCCGTCGCAC 23039 |||| |||||||||||| |||| |||||||||||||||||||| ||||| ||||| || Sbjct 24115 GCCAGCTTCAAGCCGATCAACGCCAAGGCCAGCACGCAGGACGGCCTGAATCCGTCCCAT 24056 Query 23040 GTCGGTCTCGACGAGATCCATGCGCACAAGAGCGCTGACCTGCTGAACGTCCTGACCTCG 23099 || || | ||||||||||||||||||||| || ||| |||||||||| |||||||| Sbjct 24055 GTGGGCTTGGACGAGATCCATGCGCACAAGTCGGCCGACTTGCTGAACGTGCTGACCTCA 23996 Query 23100 GCGGCCGGCGCCCGCGGCAACCCGCTGTGGCTGTACACCACTACCGAGGGTTACACCAAC 23159 ||||| ||||| ||| |||| ||||||||||| |||||||| |||||||| || |||||| Sbjct 23995 GCGGCTGGCGCGCGCAGCAATCCGCTGTGGCTCTACACCACGACCGAGGGGTATACCAAC 23936 Query 23160 CCGGGGCCGTGGGGCGAGATGCGGCAGTTCGCGAAGCGGCTGCTGGCGGGCGTCTTCGGT 23219 |||||||| ||||| || || ||||||||||| |||| | ||||| |||| || ||||| Sbjct 23935 CCGGGGCCATGGGGAGAAATCCGGCAGTTCGCCAAGCAGGTGCTGCAGGGCATCCTCGGT 23876 Query 23220 ACCACGGCTGACCACTTCCTGGTGGTCTTCTACGCCGTCGACGAAGAGAACAAGACCCTC 23279 |||| ||||||||||||||||| |||||||||||||| | Sbjct 23875 GATTCGGCCGACCACTTCCTGGTGGTGTTCTACGCCGTCGATG----------------- 23833 Query 23280 AAGATCAAGGCGGACGACGAGTTCGACGAGCGGGTCTGGGTAAAGGCCAATCCGCTCATG 23339 ||| |||||||||||||||||| || ||| ||||||||| ||||| ||| Sbjct 23832 -------AGGACGACGACGAGTTCGACGAGTCGGCGTGGCCAAAGGCCAACCCGCTGATG 23780 Query 23340 GATGCCAACAAGCATCTGCTCTCCGCCATTCGCAAGGAAGCGATCGAGGCTAAGCAGATG 23399 || |||||| ||| |||| ||||| |||||||| || |||| || ||||||| Sbjct 23779 GACGCCAACCCGCACTTGCTGAAAGCCATCCGCAAGGAGGCTGTCGAAGCGCGGCAGATG 23720 Query 23400 CCCTCGAAGCTGGCGGAGTTCCGCATCAAGCGGCTCAACCGGCCGGCCTCGACGGCGACC 23459 || |||||||| || || ||| ||||||||||||||||| ||||| || |||| ||| Sbjct 23719 CCATCGAAGCTTGCCGAATTCAAGATCAAGCGGCTCAACCGTCCGGCTTCCTCGGCCACC 23660 Query 23460 GGTTGGGTCGACCTGACGAAGTGGGGCAAGTGCTCCGGCGAGGTGGATCTTGAATGGCTG 23519 || ||||| ||||||||||||||| ||| | |||| ||| || || || ||||| Sbjct 23659 GGCTGGGTGGACCTGACGAAGTGGCAGAAGGGTGGAGGCGCGGTCGACCTGGACTGGCTC 23600 Query 23520 GCGCAGTACCCATGCTGGGGCGGCCTCGACCTGGCCAGCACCACCGACCTGACGTGCTTG 23579 || | || ||||||| ||| | ||||| || || | | |||||||| | | | Sbjct 23599 GCCGGCCATCCCTGCTGGGCGGGCTTGGACCTCGCGAGTAACCTTGACCTGACATCTTGG 23540 Query 23580 CGCCTGGTGTGGAACGTGGACGGCATGCTGTACACCCACGGCTGGCGATGGGCCCCGGAG 23639 || ||||||||||| || |||| || |||||| ||| | || | | ||| ||| Sbjct 23539 CGGCTGGTGTGGAAGGTCGACGATATCTACTACACCTGGGGCCGCCGGTTCGTCCCAGAG 23480 Query 23640 AGTTCGGTGGCGT-TCCGCACTGAGCGCGGCACAGTGCCGTACGCAGCCTGGGTTGAGAT 23698 | | || ||| ||| || |||||||| || || ||||||| |||||| | | Sbjct 23479 GATGCAGT-TCGTGCCCGAACAGAGCGCGGGGTTGTTCCCTACGCAGGCTGGGTCGCGGC 23421 Query 23699 GGGTCTGCTGAAGCAGACCGAGGGTGACGTCGCCGACTATGCAGTGATCGAGCGGGACAT 23758 || ||| | || ||| ||||| || ||| ||||||| ||| | ||| | ||| Sbjct 23420 TGGCCTGATCGAGGTGACTGAGGGCGAAGTCACCGACTACCAGGTGGTAGAGGCGCGCAT 23361 Query 23759 TCTCGCGGCTGTTGAGCGTTTCGGCGTGAAGTTGATTGCGTACGACCGCTGGAACGCATC 23818 | | | | | ||| | |||| | | |||| |||||||| Sbjct 23360 GAGGGATGACATCGCCAGGTTCAATCCCCTGGTGATCGGCTTCGACAAGTGGAACGCCCT 23301 Query 23819 CGACCTGGTCAACCGCCTGGTGGCGGAGGAGGTGCCAATGCTGGAGTTCATCCAGGGCAC 23878 || | | | || ||| ||||||||| || || | |||||| |||| ||| Sbjct 23300 GGAGATTACCCAGCGGCTGCTGGCGGAGGGTCATCCGCTGATCGAGTTCGGCCAGACCAC 23241 Query 23879 TAAGTCCTACCACCCGACGATGCAGGCCCTGGAGGTCGCCTACATCAGCGGCAAGCTGGC 23938 ||| ||| |||||| ||||||| | || ||| ||||||||||||| ||| | Sbjct 23240 GAAGAACTATCACCCGGCGATGCAAGAGCTCGAGCGCGCCTACATCAGCAAGAAGATCCG 23181 Query 23939 CCACGGTGGCGATCCGCTGCTGAACTGGTGCGCCTCCAACGTGATCCCGCGCTATGACGG 23998 ||||| ||| || | |||||||||||||| || ||| | || | | ||||| Sbjct 23180 GCACGGGAACGACCCCGTTCTGAACTGGTGCGCGTCGAACCTCATTGCTGTGAAGGACGG 23121 Query 23999 GAACATGAGCATGGCGCCCGAC 24020 ||| ||| |||| ||| ||| Sbjct 23120 AAACCTGAACATGAAGCCTGAC 23099 Score = 159 bits (176), Expect = 9e-35 Identities = 347/511 (68%), Gaps = 14/511 (3%) Strand=Plus/Minus Query 25646 GGCGCTGGAGCGCTGGAAC-CCAGCCATTCGCGCTGCGGTGGAGGA--AG--AGAACAG- 25699 |||| | || |||||| | ||||| || |||||||||| ||||| || ||| | | Sbjct 21606 GGCGTTTGATCGCTGGGATTCCAGC-ATCCGCGCTGCGGCTGAGGATCAGGAAGACCGGA 21548 Query 25700 -CATCAGCATCTTCGACCCGATCGGGTACGACTGGTGGACTGGCGAGGGCGTCACGGCCA 25758 |||| |||||| |||| |||||| | ||||||||||| || | ||| |||| || | Sbjct 21547 CCATCGGCATCTACGACGTGATCGGCGAGGACTGGTGGACAGGTGGCGGCTTCACTGCAA 21488 Query 25759 AGCGCATCAGCGCCGCGTTGCGAGCCATG---AAGGATGCCGACGTGGTGGTGAACATCA 25815 ||||||| ||| || | || | || |||| ||| || || ||||| Sbjct 21487 AGCGCATGTCCGCGGCACTTCGTTCGTTGGGTAAGGGC-CCG--GTTACCGTCGCCATCA 21431 Query 25816 ACAGCCCTGGCGGAGATGTCTTCGAGGGGCTGGCGATCTACAACCTGCTGCGCGAGCACA 25875 || || ||||| || | ||||| || ||||| || ||| |||| ||||||||| Sbjct 21430 ACTCTCCGGGCGGCGACATGTTCGAAGGACTGGCCATGTACTCGATGCTTCGCGAGCACC 21371 Query 25876 AGGGCAAGGTCACCGTACGCGTGCTCGGCCTGGCAGCTTCCGCAGCGTCGTTCATTGCCA 25935 |||| ||||||| || ||| | || | || || || ||||| || |||| |||| Sbjct 21370 CGGGCGAGGTCACGGTGAAGGTGATGGGTATCGCGGCCTCTGCAGCCTCCATCATCGCCA 21311 Query 25936 TGGCGGCCGATGAGGTGAAGATCGCCCGCGCCGGCTTCCTGATGATCCACAACGCCTGGA 25995 |||| | ||| | ||| |||| || || | ||||||||||||||||||||| |||| Sbjct 21310 TGGCCGGCGACCACGTGCAGATTGCGCGATCGGGCTTCCTGATGATCCACAACTGCTGGC 21251 Query 25996 CGATCGCCGCGGGTGACCGCAACGAGTTCAAGGAGGTGGCCAGCTTCCTGGAGCAGATCG 26055 | ||||| || ||||| ||||| | ||| | || | ||||||| ||| Sbjct 21250 TCCTGGCCGCAGGAAACCGCCACGAGCTGCGCGAGATCGCTGACCAGCTGGAGCCATTCG 21191 Query 26056 ACGGAACCCTGGCCGACATCTACTCGGTGCGCACCGGCGACCCGGTCGAGGACATGCAGG 26115 || | |||||||| | ||| ||| | || ||||| | ||| ||||||| Sbjct 21190 ACCAGGCAATGGCCGACGTGTACGCGGCCAGGACGGGCGAAGACCTTAAGGCCATGCAGA 21131 Query 26116 CGCTGATGGATGTCGAGACCTGGATGGGCGG 26146 ||| |||||| |||| ||| || ||||| Sbjct 21130 AGCTCATGGATCGCGAGTCCTACATCGGCGG 21100 Score = 105 bits (116), Expect = 2e-18 Identities = 248/371 (67%), Gaps = 9/371 (2%) Strand=Plus/Minus Query 27268 ATCGATGACCTGCGCCTGGCGATGCTGCAGGCCCAGCTGGCGCGCCTGCCGGCATCCG-- 27325 |||||| |||||| | || |||||||||| ||||| || | | | | ||| Sbjct 20013 ATCGATCGTCTGCGCATTGCCATGCTGCAGGTGACCCTGGC-CGAGTAC--GAAGCCGAT 19957 Query 27326 -GCCACGTTCTGCACTTCATCGACTGGGCGAAGATCGAGCTGACCAAGGACACCCTGGGC 27384 || ||| ||| || |||||||||| | | ||||| ||| | ||| |||| | | Sbjct 19956 GGCATCGTGCTGAACCCCATCGACTGGACCACCATCGAACTGTCGAAGACCACCGAGAAC 19897 Query 27385 CGCTACATCCTCGCCAACCCGCTGGGCCTGGCCGGCCCGCTGCTGTGGGGCCTGCCGGTG 27444 |||| | |||||| |||| |||||||| | ||| ||||||| | ||||| Sbjct 19896 GCCTACCTGTTCGCCACGCCGCGTGGCCTGGCTGTCCCCGGTCTGTGGGCGCGCCCGGTC 19837 Query 27445 GTTGCCACTGAAATCGCCGCGTTCCAGGGCAAGTTCCTGACTGGTGCGTTCCAGACCGGC 27504 || || || | ||| | | |||| | |||||||| ||||| ||| ||| || Sbjct 19836 GTGGCAACCAAG---GCCATGGATCTGGGCGACTTCCTGACCGGTGCCTTCAAGATGGGT 19780 Query 27505 GCGCAGATCTTCGATCGCGAAGACGCCAACGTGGTGATCTCCACCGAGAACGCCGACGAC 27564 || ||| || || ||||| | || ||| | | |||||| | || || |||| || Sbjct 19779 GCTCAGGGCTGGGACCGCGAGCAGGCGAACATCACGGTCTCCAACCAGGACCGCGACAAC 19720 Query 27565 TTCGAGAAGAACATGATCTCGATCCGTTGCGAAGAGCGCCTGGCGCTGGCCGTGAAGCGC 27624 |||| ||||||||| || | |||| ||||| ||| | ||| ||| |||| ||| Sbjct 19719 TTCGTCAAGAACATGGTCACCATCCTCTGCGAGGAGGACGTGGGCCTGACCGTCTTCCGC 19660 Query 27625 CCCGAGGCGTT 27635 |||||||| || Sbjct 19659 CCCGAGGCCTT 19649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133861047230944