Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_031019.1 Length=41809 Score E Sequences producing significant alignments: (Bits) Value seq2629 168 2e-37 seq2561 102 2e-17 >seq2629 Length=15125 Score = 168 bits (186), Expect = 2e-37 Identities = 461/700 (66%), Gaps = 12/700 (2%) Strand=Plus/Minus Query 40399 GCGTCAACAACTACGCCAATGATTTTGCAGTTTCCGTTGATTTCTATCATCGGATATTGT 40458 || || || || ||||| || ||||| ||||| || || || |||||| | || || Sbjct 7417 GCATCTACTACAACGCCTATTATTTTACAGTTCCCATTAATGGGTATCATGCGGTACTGA 7358 Query 40459 GGGTTTAATGGTTTTAAAAACTTTCGGCCTGCATCCATAACTAATTTTTTGAATGTGGCC 40518 || || | ||||||| | | ||| || ||||| | | ||| ||| |||||||| Sbjct 7357 GGATTCAGAGGTTTTAGATATTTTGAACCAGCATCTGTTATGTATTGTTTAAATGTGGCT 7298 Query 40519 TCGTTTTCACCTTCTAATTTTGCAACAACCAGCTTGCCGTTTCTTGGTTCGACTTCGGGA 40578 || || || || ||| || ||||| | ||| || || ||| || | | || Sbjct 7297 TCATTATC------TAGTTTGGCCACAACTAACTTACCATTAACTGGCTCTATATTTGGG 7244 Query 40579 TCAACCAGAATTATCATTCCTTCTGGAATGCTTAACCCTGCCGGTGCTGTCATAGAGTCA 40638 ||||| | || | ||| ||||||||||| || | |||| || | |||||||| ||| Sbjct 7243 TCAACTAATATAACCATCCCTTCTGGAATACTAAGTCCTGAAGGAGACGTCATAGAATCA 7184 Query 40639 CCTTGGACATCAAGCCAAAATGAATCTTCTGAACAATCTACAGTGGTGTCGTGCCAGTTC 40698 || ||||| | |||||| ||||| | ||||| || || || |||| ||||| Sbjct 7183 CCGATCACATCCAACCAAAAAGAATCACCAGAACAGCTGACGGTAGTTTCGTACCAGTCA 7124 Query 40699 TCTATCGCGCGCTTGTGATAAGGTTCTACAGCTTCCATCCATTGCCCTGCGCTTACCCAA 40758 ||||| | | ||||| || || || || ||||| |||| | || ||||| ||||| Sbjct 7123 TCTATAGATAGTTTGTGGTATGGCTCCACGGCTTCGCTCCAATTACCAGCGCTAACCCAG 7064 Query 40759 CTGATAAGAGGGTATGATCCTCTTGGCTCATGCCTACTATGATAGGCAACGTT-TGTCTG 40817 || ||||||||||| ||||||| | ||| || | | | ||| || | | Sbjct 7063 CTTATAAGAGGGTACTCACCTCTTGAGTGATGAAATTTAGAAAATGAAACATTATCACCA 7004 Query 40818 GCTTAA--ATCTCCTTTCAGCAAATAGTCAGGGGAGCACTGAAGAGCCTTCGAAAGTGCC 40875 | | | || ||| ||| | || ||||| | ||| ||||| | | | ||| Sbjct 7003 CCGTCACTATTACCTGTCATAAGGTATTCAGGTGCACACCCAAGAGAACTTGCTAATGCT 6944 Query 40876 AACAGGTTCTCCCCATTTGGCTCAGTCTCCGAGCGCTCCCATTGCGATATTGCAACATTA 40935 | | ||| | |||| ||| || | || |||||||| || || | | | Sbjct 6943 ATTAAGTTTCCTCCATCTGGTGATGTTATCCCGCCTTCCCATTGAGAGATGGATGCGTGT 6884 Query 40936 GACACTCCCACCATCTTACCAAGAGCGGCTTGTCTAATCTTGAGtttttttCTTCGAGCG 40995 || || || || ||||| | || || || ||| | | ||| || | ||||||||| Sbjct 6883 GATACGCCGACTTTCTTAGCCAGCGCAGCCTGTGTGAGCTTAAGCTCTTTTCTTCGCAAT 6824 Query 40996 CGAATACGCTCACCCATCAATTGTGT-ATTCATAGTTAAGTCATCTTAAATAAACTTGAC 41054 ||| || || || || | |||| | |||||||||||||| ||||||||| |||||| Sbjct 6823 TTAATGCGGTCGCCGAT-ATTTGTTTCATTCATAGTTAAGTAATCTTAAATCTTCTTGAC 6765 Query 41055 TAAAGATTCCT-TTAGTAGATAATTTAAGTGTTCTTTAAT 41093 | |||| |||| | || |||||||||| |||| ||| Sbjct 6764 TTAAGAGTCCTAAAAATACATAATTTAAGATGTCTTAAAT 6725 Score = 140 bits (154), Expect = 9e-29 Identities = 122/152 (80%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 3867 GATAAACTGAAGATTCGAAAACTCGCCTTAAAGCCCCGCAGTTACTGGATTAAACAAGCC 3926 |||||||| || || || | || |||| ||||||||||| |||||||||||||| Sbjct 152 GATAAACTCAAAGCCCGCAAGTTAGCAGTAAAACCCCGCAGTTATTGGATTAAACAAGCA 93 Query 3927 CAACAAGCCGTAAACGCCTTCATCAGAGAAAGAGACCGCGACTTACCATGTATCTCGTGC 3986 ||||||||||| ||||| | ||||||||||||||||| || || ||||| || || ||| Sbjct 92 CAACAAGCCGTCAACGCATATATCAGAGAAAGAGACCGTGATTTGCCATGCATATCATGC 33 Query 3987 GGAACGCTCACGTCTGCTCAGTGGGATGCCGG 4018 |||||| | ||||||||||||||||| || Sbjct 32 GGAACGTTTCAATCTGCTCAGTGGGATGCTGG 1 >seq2561 Length=11062 Score = 102 bits (112), Expect = 2e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 24684 ATGCATCCCACTGAAGAAACTTAACGGCTGGCTGTTCAGCATTAACCCTGAGAAAGTTCG 24743 ||| || || ||||| |||||||| |||||||||||||| |||||||| | ||||||| Sbjct 10797 ATGTATTCCGCTGAAAAAACTTAATGGCTGGCTGTTCAGTATTAACCCCGCGAAAGTTAA 10738 Query 24744 TGCAGACATCCGTGACAAACTGATTAAGTACCAGGAAGAATGCTTCACCGTTCTGTATGA 24803 ||| ||| || | ||||| | | |||| ||||||||||| || | | ||| |||| Sbjct 10737 AGCAAGCATTCGCAATAAACTCACTCAGTATCAGGAAGAATGTTTTATTGCCCTGCATGA 10678 Query 24804 TTACTGGACGAAAGGT 24819 || ||||| || ||| Sbjct 10677 CTATTGGACCAAGGGT 10662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133662653978528