Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq4 95.1 2e-14 >seq4 Length=195412 Score = 95.1 bits (104), Expect = 2e-14 Identities = 290/444 (65%), Gaps = 7/444 (2%) Strand=Plus/Minus Query 48133 ACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAA 48192 |||| | || ||||| |||| ||||| |||||||| | ||| | |||||| Sbjct 71386 ACATGAGGCAGGCAAAGTCACGGTGAAGGCCTTCATCGCGGGAAATCAGTTCGTTGCTGT 71327 Query 48193 ATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAG 48252 ||||| || ||||| || || || || ||||||||||| || || ||||| || |||| Sbjct 71326 GAGTGAGTCCAGGCATGAGGCCTCGCTTCTTGAGCCAAAAGATGGCAGCGAACGACCCAG 71267 Query 48253 AAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTG--GC-TT 48309 | ||||| || ||||| ||||| || || ||| ||| | ||| || || || || Sbjct 71266 AGAAGAAGATTCCTTCAACGGCGGCGAACGCGATAACGCGAGTTCC--AAATGAAGCGTT 71209 Query 48310 C--GTTGTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTC 48367 | || | ||||| || | ||||| || ||||||||||| | ||||| | | Sbjct 71208 CTTGTCGCCGATCCAGCGCAGAGCCCAGTCCGCCTTCTTCTTGATGCAAGGGAACTCGTG 71149 Query 48368 TATAGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAG 48427 || || || || |||| ||| || || ||| ||||||| || || | Sbjct 71148 GATGGCGTTGAAAAGAACGTTGCGCTCCTTTGGATCGACGACGTAAGCTTCAATCATCTT 71089 Query 48428 ACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGC 48487 ||||| || ||||| || ||| | |||||||| || | ||| || | || Sbjct 71088 GGAGTACATCTCCGAGTGGATGCCTTCGACGGCCATCTGGAAGCTGTAGAAGGACAAGGC 71029 Query 48488 TTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATC 48547 ||||| |||| |||||| || || || | | || ||||| || |||||||| Sbjct 71028 TTCTGGCATCTTGACCTCCTGGGTGAAACGCTCGACGAGGTTTTCATTGACGATTCCATC 70969 Query 48548 ACTAGCAGCAAAAAATGCTAATAC 48571 || ||||| || || || || Sbjct 70968 GGAGGCGGCAAAGAAAGCCAAAAC 70945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694643930856960