Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_031117.1 Length=44885 Score E Sequences producing significant alignments: (Bits) Value seq2774 262 1e-65 >seq2774 Length=20939 Score = 262 bits (290), Expect = 1e-65 Identities = 787/1198 (66%), Gaps = 50/1198 (4%) Strand=Plus/Minus Query 39398 TCTTGTGCGCTCGTGAGTTTCAAGGCTCAATTGAAGATTCTGTACATAAGTTATTAGCTG 39457 |||| ||| ||||||||||||| || || ||| || || || |||||| | | || Sbjct 16318 TCTT-TGCACTCGTGAGTTTCAGGGTTCGATTAGTGACTCAGTGCATAAGCTGCTTTGTG 16260 Query 39458 AGACAATAGAGCGTCTTGGCTATTTAAAAGAGTTTGAAATTCAGAATAAAACTATTACGC 39517 | || || || || || |||||| |||||||| || || || || || || |||| | Sbjct 16259 AAACCATCGACCGACTCGGCTATGAGAAAGAGTTCGAGATACAAAAGAACACGATTATTC 16200 Query 39518 ACTTGGGGACAGGTGCGACTTTTGTATTCTATGGAATTAAGAACAACCCAACAAAGATCA 39577 || | || ||||| || | || ||||| ||| ||||| |||||| || ||||| | Sbjct 16199 ACCTTGGCACAGGCGCTTCATTCGTATTTGCTGGCATTAAAAACAACGTCACCAAGATTA 16140 Query 39578 AGTCAATTCAAGGTGTTGGTGTTGCGTGGATTGAAGAGGCTGAGGCGGTAACAAAAAGAT 39637 | |||||||||||||| || || ||||||||||| || ||||||||| || | Sbjct 16139 AATCAATTCAAGGTGTCGGCATTTGCTGGATTGAAGAAGCCGAGGCGGTAGTTAAGGATT 16080 Query 39638 CATGGGA--TATTCTAATTCCGTCTATTCGTGGCGATAAGAACGCAAAGATTTTTATTAC 39695 ||||||| |||| | | || || |||||||||||||| ||||| | || | | | Sbjct 16079 CATGGGAAGTATTGT--TGCCCTCAATTCGTGGCGATAAAAACGCGGAAATATGGGTAAG 16022 Query 39696 TTTTAACCCTGCCAATATTCTTGATGATACCTATCAAAGATTTATTGTTAATCCTCCTAA 39755 || ||||| || |||||||| || || || || |||||| | || || || || | Sbjct 16021 CTTCAACCCGAAAAACATTCTTGACGACACTTACCAGAGATTTGTGGTGAAGCCGCCAGA 15962 Query 39756 AAACTCATTAGTTTTGAAGGCTAATTACAATAACAATATTTACTTTGATGAGTCGCCATT 39815 || |||| | || ||||||||| | ||| ||||| | || ||||| | Sbjct 15961 GGGTGCAATAGTCCTCAAAGCTAATTACGACGTAAATCCCCACTTTTACGACACGCCACT 15902 Query 39816 GCGTGAAGAAATGGAGGAATGCAAGGAAAAGGATTATGAGCTTTACTTGCATATATGGGA 39875 | | | ||||||| || || || || || |||||||||| ||||| ||| Sbjct 15901 CCCTAAGCAAATGGAAGAGTGTAAAGAGCGCGACCCTGAGCTTTACCGCCATATCTGGCT 15842 Query 39876 AGGCGAACCAGTTGCAGATAGTGAACATGCATTCATTAAACCAATGTGGATTACTGCTGC 39935 ||| |||||||| |||||| | || ||| | || || || |||||| || || Sbjct 15841 AGGTGAACCAGTAGCAGATTCAGCACTGGCAATTATCAAGCCTGCATGGATTGAGGCGGC 15782 Query 39936 ATTAAACGCGCATGAGAAACTAGGTTTTACTGCTAGTGGTAAAAAGTTTGGCGGGCTAGA 39995 | | |||||| || |||| ||| | || ||||| ||| ||| | || Sbjct 15781 TGTCGATGCGCATATCAAGTTAGGCTTTGAGCCAAGAGGTAAGCGAATTGTCGGTTTCGA 15722 Query 39996 TGTTGCTGATGAAGGTGAGGATGCAAACGCATT--TGCTAGACGTCATGGATC---TGTT 40050 ||||||||||| || || ||||| |||||| | |||| |||||||| || || | Sbjct 15721 CGTTGCTGATGACGGCGAAGATGCTAACGCAATAGTGCT--TCGTCATGGTTCGGTTGCT 15664 Query 40051 TTGTATGCCATTGATGAGTGGAAACAAGG---CGATGTTATATTTACGGCAGATAAGGCT 40107 |||| || |||| |||||| | ||| || || ||||||| || || |||| | Sbjct 15663 TTGTCTG---TTGAAGAGTGG---CGAGGTCAAGACGTCATATTTAGCGCTGACAAGGTT 15610 Query 40108 CACACTATTGGACTGG---AAG-AGAACTTAGACCAAATCACTTACGATTCTATTGGTGT 40163 | | |||| | ||| | ||| |||| | | | || || || || || || Sbjct 15609 TATGC----GGACGCGGTTAAGAATAACGTAGATACAGTTATCTATGACTCAATCGGCGT 15554 Query 40164 GGGTGCTGGTGTTAAAGCGCAGTTCAACAG-AAAGAAAAGTAGAATACGTGTTGGTGGAT 40222 || ||||| ||||| || || || ||| | ||||| || | | || | || || | Sbjct 15553 AGGGGCTGGCGTTAAGGCTCAATTTAACCGTAAAGATAA-TCGCATTGTTACTGTCGGGT 15495 Query 40223 TTAATGCAGGTGGCAAAGTTGCTAAGCCAGAATCACAAAT-TTATTTAGGAAAGAAAAAT 40281 ||||||| || | |||| ||||||||| ||| | | | || || | |||| Sbjct 15494 TTAATGCTGGCGCTTCCGTTGAGAAGCCAGAA-AGCAACTATAAGCCTGGTAAAACAAAT 15436 Query 40282 ATTGATATGTTTGCCAATGCAAAGGCACAGGAGTGGTGGGCA-TTGCGTACACGTTTTTA 40340 | |||||||| |||| ||||| ||| | ||| | |||| || |||||||| Sbjct 15435 AAAGATATGTTCTCCAACCTGAAGGCGCAGCAATGGCAATTAGTTGCTGAC-CGTTTTTA 15377 Query 40341 TAATACTTGGCGAGCTGTTGAGCATGGCGATAAGTTTAAGGAAGATGAGTTAATTTCTAT 40400 || |||||| ||||| | ||||||||||| || || | || || ||||||| ||| Sbjct 15376 CAACACTTGGAGAGCTATCGAGCATGGCGACAAATTCACCGATGACCAGTTAATCAGTAT 15317 Query 40401 TTTAGTTGGCAAAGGCGGTATAACTCAAACAGAATTTGATTATCTTCGTGCAGAATTATC 40460 | | | | | | | ||| | || || || || || ||||| Sbjct 15316 AT-------CCAGTGAGAT--------GAAAGATATCGAATACCTCAAAGCCGAGTTATC 15272 Query 40461 GCGCCCTAGAATCGATTATGACAAAAACGGCAAGGTGATGGTAGAATCTAAGCAGAAAAT 40520 |||||| | | ||||||||||| ||||| || | ||| || ||| || | || Sbjct 15271 GCGCCCACAAGTTGATTATGACAATAACGGGCGCGTAAAGGTTGAGAGTAAAAAGGATAT 15212 Query 40521 GAAGAAGCGTGGCATCCCATCTCCAAACAAGGCGGATTCGGTTGTTTTGTGCTTTGCT 40578 |||||| || ||||| || |||||||| || ||| || | || || |||||| Sbjct 15211 GAAGAAACGCGGCATACCTAGCCCAAACAAAGCCGATGCGTTCATTATGGCGTTTGCT 15154 Score = 109 bits (120), Expect = 2e-19 Identities = 215/312 (69%), Gaps = 12/312 (4%) Strand=Plus/Minus Query 41044 CACATCGAGAATGATTACTACTATGGTGGC--TCTCAGTTATACATTCAGATCGAAGGGC 41101 ||||| |||||||| | | ||| ||| ||||| | ||| | | ||| | |||| Sbjct 14602 CACATTGAGAATGA--AATGATATTCGGGCGATCTCAAATTTACCTCGATATCAAGGGGC 14545 Query 41102 AAGAGGATAAGACCGATCTGCCTCTATTGATTAACGAGAAAGGCATTAAGAAAGGCTCGT 41161 | || |||||| ||| | || ||| | ||||| ||| || | ||| |||| | Sbjct 14544 ATGATGATAAGCGTGATTTACCACTACTTATTAATGAGGCGGGAGTAAAGGAAGGTGAGC 14485 Query 41162 TAAAAGGCTTCACGGTTATTGAGCCGCTTTGGTCCACGCCTAGTATGTACAATGCAAATA 41221 |||| || || |||| |||||||| | ||||| || |||||||||||||| ||| Sbjct 14484 TAAACGGATTTGCGGTGATTGAGCCTATCTGGTCAACACCTAGTATGTACAACTCAACCG 14425 Query 41222 ATCC-ACTAGAAAGTGATTTCTTTGTGCCTAAGCAGTGGTGGGTTATGGGTAAAAATGTA 41280 | || || || ||||||||| ||||||| ||||||| ||| | ||||| ||| Sbjct 14424 ACCCGACCAG-CCCTGATTTCTTCGTGCCTACTCAGTGGTTTGTTTTAGGTAAGAATACT 14366 Query 41281 CA---TCATAGCCGATTGCTTACATTAATTATGCGTCCCGTTGGGCAAATGCTTAAGCCA 41337 || | ||| |||| || || |||| ||||| ||||| | | || || |||||| Sbjct 14365 CACGCTGATA---GATTACTAACCCTAATCATGCGCCCCGTGAGCGATATTCTGAAGCCA 14309 Query 41338 GCTTATAATTTT 41349 || ||||| ||| Sbjct 14308 GCGTATAACTTT 14297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143505519211296