Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_031129.1 Length=103445 Score E Sequences producing significant alignments: (Bits) Value seq1458 491 3e-134 seq2557 215 3e-51 seq2629 111 1e-19 seq2599 102 5e-17 seq2600 100 2e-16 >seq1458 Length=11418 Score = 491 bits (544), Expect = 3e-134 Identities = 771/1100 (70%), Gaps = 10/1100 (1%) Strand=Plus/Minus Query 96695 CCAGCATAGTTATCAAACCGTGAGTATTGGCCGTTAAAAGCCAATCTCACCGTGCCAATT 96754 || ||||| ||||| ||||| || ||||||||||||| | || || || || || ||| Sbjct 1899 CCTGCATAATTATCGAACCGCGACCATTGGCCGTTAAATGTCAGCCTTACTGTACCGATT 1840 Query 96755 GGGCCATTTCGTTGCTTTCC---GATAATTACCTCGGCAATGCCCTTCATTTCGCTATCC 96811 |||||||| || || || || ||||||| || || | || |||| ||| || | Sbjct 1839 GGGCCATTACGCTGTTTACCAAGGATAATT---TCTGCTACACCTTTCAGTTCACTGTTA 1783 Query 96812 GGGTGATAAACTTCGTCGCGATACAAAAACATGATCAGGTCTGCGTCCTGCTCAATTGCT 96871 |||||| || || || ||||| | ||||||||| | ||| || ||||||||||| | Sbjct 1782 TCGTGATACACCTCATCACGATAGATAAACATGATTAAGTCAGCATCCTGCTCAATAGAG 1723 Query 96872 CCTGATTCACGTAAATCTGAATTTACCGGTCGTTTGTCCGCACGCTGTTCAAGCGATCGA 96931 ||||||||||| | ||| || || ||||| ||||| || || ||||| || || || Sbjct 1722 CCTGATTCACGCAGATCAGAGTTAACCGGACGTTTATCAGCCCGCTGCTCCAGACTACGG 1663 Query 96932 TTAAGTTGTGACAATGCCACCACCGGTACTTGTAATTCCTTCGCCAACGCCTTCAGTGAG 96991 ||||| || || | || || || || || |||||||| ||||||||||| || || || Sbjct 1662 TTAAGCTGGGAGAGCGCTACAACAGGCACCTGTAATTCTTTCGCCAACGCTTTAAGGGAA 1603 Query 96992 CGAGAAATCTCGGCAATTTCCAGCGTTCGGTTATCTTGCAGCTCCGGGACGCGCATAAGT 97051 || || || || |||||||||| ||||||||||| || || || ||||| | | Sbjct 1602 CGGGATATTTCTGCAATTTCCAATGTTCGGTTATCAGAGAGGGAAGGCACCCGCATTAAT 1543 Query 97052 TGCAGGTAGTCGATCATAATCATGCTCAAACCACCATTTTCTTTATAAACACGACGAGCG 97111 ||||||||||||||||| ||||| || | || |||| || |||| | | || Sbjct 1542 TGCAGGTAGTCGATCATGATCATACTAAGCCCGCCATGCTCACGGAAAACTCTTCTCGCA 1483 Query 97112 CGGGAACGTAGCTCTGTCGGCGTCAGGGCGCTTGAGTCATCAATAAAAATATTCTGCTTG 97171 ||||| || | || | ||| |||||| || ||| ||||||||| | ||||| | || Sbjct 1482 CGGGAGCGCACTTCAGACGGAGTCAGGCCGGATGAATCATCAATATACATATTGCGTTTT 1423 Query 97172 TCCAACAGAATACCCATTGCGCCAGAAACCCGCGCCCAATCCTCGTCGTTAAGTTGCCCT 97231 |||| || ||| ||||| | | |||| || ||||| || || || | ||| || || Sbjct 1422 TCCAGCAAAATCCCCATCGTACTCGAAATACGGGCCCAGTCTTCATCATCAAGCTGGCCG 1363 Query 97232 GTTCGAATACGAGTCTGATCAACGCGTGCAAGAGAAGCCAGTGAGCGCATCATCAGCTGG 97291 ||||||||||| |||||||| ||||| | ||| || |||| |||||||| | || Sbjct 1362 GTTCGAATACGTGTCTGATCCACGCGGGAAAGTGATGCCAACATACGCATCATGATTTGA 1303 Query 97292 TGGCTCGGCATCTCAAGGCTAAAAACCAATACGGGCTTATCGTTACGAACTGCGGCATTT 97351 | | |||||||| || || || | || || || ||||| | | || || ||| Sbjct 1302 TTACCGGGCATCTCCAGACTGAAGATTAACACTGGTTTATCCTGCATCATCGCTGCGTTT 1243 Query 97352 TCGACGAGATTCATCGCAAACGTGGTCTTCCCCATAGATGGGCGGGCGGCGACAATGATG 97411 ||| || ||||||||||| || || || ||||| || || || || || || || || Sbjct 1242 TCGCACAGGTTCATCGCAAAGGTTGTTTTACCCATTGAAGGACGAGCAGCAACGATAATC 1183 Query 97412 AGATCGGACGACTGAAGCCCTGCCGTCTTCTTATTGAGATCGGTAAATCCGGTATCAAGT 97471 || || || || || |||||||| ||||||| ||||| | | || ||| || Sbjct 1182 AGGTCAGATTTTTGCAGACCTGCCGTTTTCTTATCCAGATCCTGATAGCCAGTAGAAACC 1123 Query 97472 CCCGTTACACCATCATGCGGTCGCTGAAACAACTCTTCTATGCGAGATACCGTTGCATCG 97531 || |||||||||||||| || ||||| | | || ||| || || || ||| | || Sbjct 1122 CCGGTTACACCATCATGTGGGCGCTGGTAAAGCTGTTCAATACGTTCAACAGTTTCTTCA 1063 Query 97532 AGAATGCTGGCGATATCTTTTGGACCACTACCGCTCT--TTTGTCGTTTTTCAGCTATTT 97589 || || | | || ||||||| | || | || | || || ||||| || || | Sbjct 1062 AGGATTCGCTCAATCCCTTTTGGGC--CTTCGTCTTTGCTTGCACGGTTTTCTGCGATCT 1005 Query 97590 CAAAAACGCGGCGTTCGGCCATATCCAGCAATTCATTGCTGCCCCGGCCATCCTGCGCAT 97649 || || || || |||| ||| || ||||| | |||| || || | | | | Sbjct 1004 GGAATACACGTGACTCAGCCAGATCAAGTAATTCTTCGCTGGTTCGCCCTTGTGGGTCGT 945 Query 97650 ATCCAGCTTCAGCTATTTCATTTGCGACGGAAATCATTTCACGAACAACCGCGCGTTCAC 97709 | || || || || ||||||||||| || | |||||| || ||||| || || || |||| Sbjct 944 ACCCCGCATCGGCAATTTCATTTGCAACTGCAATCATATCGCGAACGACAGCACGCTCAC 885 Query 97710 GAACGATATCCGCATAAGCACAAATATTTGCCGCGCTGGGCGTGTTCTTTGACATCTCCG 97769 | || ||||| ||||||||| ||||| || || || ||||| || ||||||| ||| | Sbjct 884 GGACAATATCGGCATAAGCATTGATATTGGCGGCACTTGGCGTATTTTTTGACAACTCTG 825 Query 97770 CAAGGTACGCAAAACCACCG 97789 | | || |||||||| ||| Sbjct 824 CCAAATAAGCAAAACCGCCG 805 Score = 140 bits (154), Expect = 2e-28 Identities = 287/426 (67%), Gaps = 12/426 (3%) Strand=Plus/Minus Query 44624 ACCGCCACCACTGTATTGCTGGTGGTTTTGAGGTTGGTTTGATTGCCCCCAGCCATTT-- 44681 |||||| |||||| ||||||| || || || | || || ||||||||| | Sbjct 11292 ACCGCCGCCACTGAATTGCTGAGATGCCTGTGGCTGTTGTGGTTTCCCCCAGCCGCCTTG 11233 Query 44682 -----GAGGA--CTGTGAATCGTCACGGCGAGCGCCGATCATTTGCATGGTGCCGCC--- 44731 ||| | |||||| || ||| ||| |||| | ||||||||| || ||||| Sbjct 11232 TGCCGGAGCATCCTGTGATGCGCCACCACGACCGCCTAACATTTGCATTGTACCGCCAAT 11173 Query 44732 CTGGCTGACGATAATTTCCGTCGTGTAACGTTCTACACCGGCGTCATCTGTCCACTTACG 44791 | || |||| | | ||| ||||||||||| || ||| | ||| ||| ||||| Sbjct 11172 CGGGTTGACAACGACTTCAGTCGTGTAACGATCCTGACCACTCTGATCCTGCCATTTACG 11113 Query 44792 GGTTTTAAGTTTCCCTTCGATGTAGACCTGAGAACCTTTTCGTAAATACTCACTCGCAAT 44851 ||| | | |||||||| ||||||||||| ||||| || | ||||||| || | Sbjct 11112 GGTCTGCAAAGCACCTTCGATATAGACCTGAGAGCCTTTACGCAGGTACTCACCAGCGAC 11053 Query 44852 TTCAGCAAGTTTTCCGAACAAAACGACTTTATGCCATTCTGTTTGCTCTTTCTGTTGGCC 44911 ||| || ||||| ||||||| || ||| |||||||| |||| |||| || | || Sbjct 11052 TTCTGCCAGTTTACCGAACATGACCACTCGGTGCCATTCGGTTTTCTCTCTCATCTCACC 10993 Query 44912 CGTTTGCTTGTCGCGCCATGATTCATTCGTTGCGATGCTGAGTCTTCCGACCGCTCCGCC 44971 |||||||| || ||||| || ||| || | | | | | || ||||| || Sbjct 10992 GGTTTGCTTATCACGCCAGCTCTCGGACGTGGCCAGAGTAATGTTGGCAACTGCTCCACC 10933 Query 44972 ATTTGGTATATACCTGATCTCCGGGTCTTGCCCCAGGGTACCAATCAGGATGACTTTGTT 45031 ||| || ||||| | | ||||| || ||||||| |||| | | || |||||||| Sbjct 10932 ATTCGGCATATAGCGAACTTCCGGATCCTGCCCCAAATTACCCACTAAAATAACTTTGTT 10873 Query 45032 TACACC 45037 ||| || Sbjct 10872 TACGCC 10867 >seq2557 Length=24734 Score = 215 bits (238), Expect = 3e-51 Identities = 316/446 (71%), Gaps = 6/446 (1%) Strand=Plus/Minus Query 18723 TGCTGATT---ATGCTGCCGATGTTTATGATACCGCTCAATTGAATTCGAAGCAGGAAAC 18779 |||||||| |||| || ||||||||||| | ||||||| ||| || || ||| | Sbjct 19994 TGCTGATTCATATGCAGCAGATGTTTATGACCCAACTCAATTAAATGGAAAACAAGAAGC 19935 Query 18780 AAAGACAGTCAATATTATCTCTGTGCTTCCAGCTAAAGTGAAAGTTGATAATAAAGCTAA 18839 ||| || ||||||| || || || ||||| || ||||| || || || ||||| || Sbjct 19934 AAAAACCATCAATATCATTTCCGTTCTTCCTGCCAAAGTCGCTGTAGAAAACAAAGCAAA 19875 Query 18840 TAAAGAAGCGGCACAGACATTTGGTGCGGTACTGGGAGCTGTTGCTGGGGGCGTTGCCGG 18899 | ||||||| || ||||| |||||||| | || || ||||| || || || |||| || Sbjct 19874 TCAAGAAGCCGCCCAGACTTTTGGTGCCATCCTTGGTGCTGTAGCGGGTGGGGTTGTTGG 19815 Query 18900 TTATAATGTTAAAGGCACATCGACACTGGGTGCTGTAGCTGGCGGTACTGGTGGTGCGGC 18959 ||||||| | || | || ||| || | ||| || | | |||||| | || Sbjct 19814 CTATAATGCT---GGTTCCTCTGGGGCGGGGGCAGCAGCAGGAGCTGTTGGTGGAGGTGC 19758 Query 18960 TCTTGGTGCAGCGGCTGGTTCTTTGGTTAGTGATAAAACAATTGTTGAAGGTGTTTCACT 19019 |||||||||||| |||||||| |||| ||| ||| |||||||||||||| | || Sbjct 19757 TCTTGGTGCAGCCGCTGGTTCAATGGTGGATGAAAAAGTTATTGTTGAAGGTGTCACTCT 19698 Query 19020 GACTTATAAAGAAGGAACTAAGGTGTTCACTTCAACTCAAGTTGGTAAAGCATGCCAGTT 19079 | ||||||||| || |||| | | || || | ||| ||||| |||| ||||| Sbjct 19697 TATCTATAAAGAAAAAAATAAGATTTATACCTCTATTCAGGTTGGGCGTACATGTCAGTT 19638 Query 19080 TACAACGGGGCTTGCTGTGCTTATTTCAACTAAAGATAATGAAACTCGAATTCAGCCAAA 19139 ||| |||| | ||||| | ||| |||| || | |||||||| || || || ||||| Sbjct 19637 TACGCCGGGATTATCTGTGGTCATTACAACCCAAAAAAATGAAACACGGATCCAACCAAA 19578 Query 19140 TGCTACTTGTCCAGAAAAGAAATAAT 19165 || ||||| || | || ||||||| Sbjct 19577 CGCCACTTGCCCGAATAAAAAATAAT 19552 >seq2629 Length=15125 Score = 111 bits (122), Expect = 1e-19 Identities = 219/324 (68%), Gaps = 0/324 (0%) Strand=Plus/Minus Query 44714 CATTTGCATGGTGCCGCCCTGGCTGACGATAATTTCCGTCGTGTAACGTTCTACACCGGC 44773 ||||||||| | ||||| | || | | |||||| ||||| || ||| |||| Sbjct 12586 CATTTGCATTGACCCGCCGATATTTACTACCACTTCCGTTGTGTATCGGTCTTGACCGCT 12527 Query 44774 GTCATCTGTCCACTTACGGGTTTTAAGTTTCCCTTCGATGTAGACCTGAGAACCTTTTCG 44833 | ||| ||| ||||| |||| || ||||||||||| ||||| |||||| Sbjct 12526 TTGGTCTTGCCATTTACGCGTTTGCAGAGAGCCTTCGATGTATACCTGGCTTCCTTTTTT 12467 Query 44834 TAAATACTCACTCGCAATTTCAGCAAGTTTTCCGAACAAAACGACTTTATGCCATTCTGT 44893 | ||| || | |||| |||||| | || ||||| | || ||| ||||||||| || Sbjct 12466 CAGATATTCGCCTGCAACTTCAGCTAACTTGCCGAAAATTACCACTCGATGCCATTCGGT 12407 Query 44894 TTGCTCTTTCTGTTGGCCCGTTTGCTTGTCGCGCCATGATTCATTCGTTGCGATGCTGAG 44953 || ||| | || |||| ||| ||||| ||||| ||||| || || | |||| Sbjct 12406 TTTCTCGCGCATTTCACCCGATTGTTTGTCACGCCACGATTCCGATGTGGCTAGTGTGAG 12347 Query 44954 TCTTCCGACCGCTCCGCCATTTGGTATATACCTGATCTCCGGGTCTTGCCCCAGGGTACC 45013 || | || ||||| || ||| || || | || || |||||||| || | | ||| Sbjct 12346 ATTTGCTACTGCTCCCCCTGCTGGCATGTATCGAATTTCAGGGTCTTGGCCTAAGTGACC 12287 Query 45014 AATCAGGATGACTTTGTTTACACC 45037 || ||||| || |||||||| || Sbjct 12286 TATGAGGATTACCTTGTTTACGCC 12263 >seq2599 Length=15424 Score = 102 bits (112), Expect = 5e-17 Identities = 185/271 (68%), Gaps = 0/271 (0%) Strand=Plus/Plus Query 44783 CCACTTACGGGTTTTAAGTTTCCCTTCGATGTAGACCTGAGAACCTTTTCGTAAATACTC 44842 |||||| || |||| | || || || || || | ||| ||||| | | ||| || Sbjct 92 CCACTTGCGTGTTTGCAATTGACCCTCAATATAAATCTGGCTGCCTTTCCTCAGATATTC 151 Query 44843 ACTCGCAATTTCAGCAAGTTTTCCGAACAAAACGACTTTATGCCATTCTGTTTGCTCTTT 44902 || |||| ||| || ||||||||||||| ||| || ||||||||||||| || | Sbjct 152 ACCGGCAACTTCTGCCAGTTTTCCGAACAGAACCACACGGTGCCATTCTGTTTTTTCCCT 211 Query 44903 CTGTTGGCCCGTTTGCTTGTCGCGCCATGATTCATTCGTTGCGATGCTGAGTCTTCCGAC 44962 | | | || | ||||||||| ||||| |||| || || | ||| | ||| Sbjct 212 CAGCTCACCTGATTGCTTGTCTTTCCATGCTTCAGAGGTAGCCAGTGTGATATTGGTGAC 271 Query 44963 CGCTCCGCCATTTGGTATATACCTGATCTCCGGGTCTTGCCCCAGGGTACCAATCAGGAT 45022 || || ||||| ||| || | | ||||||||||| || | | ||| | ||| || Sbjct 272 TGCGCCACCATTGGGTGAGTAACGTACTTCCGGGTCTTGACCTAAGTGACCGACCAGAAT 331 Query 45023 GACTTTGTTTACACCGCGTTGTGCCATTTAT 45053 | |||| || |||||||||||||||||| Sbjct 332 ACATCTGTTAACGCCGCGTTGTGCCATTTAT 362 >seq2600 Length=29343 Score = 100 bits (110), Expect = 2e-16 Identities = 72/82 (88%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 98311 AAATATGGTGGCCCCTACCGGACTTGAACCGGTGACCGTGCGATTATGAGTCGCCAGCTC 98370 |||| ||||||||||||| ||||||||||| |||||| ||||||||||||| | |||| Sbjct 82 AAATTTGGTGGCCCCTACTGGACTTGAACCAGTGACCAATCGATTATGAGTCGACTGCTC 23 Query 98371 TAACC-ACTGAGCTAAAGGGCC 98391 ||||| |||||||||| ||||| Sbjct 22 TAACCAACTGAGCTAAGGGGCC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 330887649963424