Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq2162 145 2e-29 seq2252 141 2e-28 seq1859 91.5 3e-13 seq1739 87.8 4e-12 >seq2162 Length=74254 Score = 145 bits (160), Expect = 2e-29 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 |||| ||| ||||| || ||||| ||||| || ||||||||||| || ||||| | Sbjct 49316 AGTCGGAGAACAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCACTCAAAGTGCGG 49257 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||||| | || || || ||||| |||| ||||||||| | | ||||||||| Sbjct 49256 CCATCTTCCAACTGCTTGCCAGCAAAGATCAGCCGCTGCTGGTCGGGAGGAATTCCTTCC 49197 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || ||||| || || ||| || | || | | |||| |||| ||| || |||||||| Sbjct 49196 TTGTCTTGGATCTTAGCTTTCACGTTTTCAATGGTGTCAGAACCCTCGACCTCAAGAGTG 49137 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || |||||||| || |||||||| || |||| |||||| Sbjct 49136 ATCGTTTTGCCTGTCAGAGTCTTGACAAAGATCTGCAT 49099 Score = 134 bits (148), Expect = 3e-26 Identities = 161/217 (74%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || ||||| || || || || ||||||||||| ||| ||||| | |||||| Sbjct 48626 AGAACTAGGTGAAGCGTCGATTCCTTCTGGATGTTGTAGTCGCTCAAAGTGCGGCCATCT 48567 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || ||||| || |||||||| || ||||||||||| | | ||| || ||||| | Sbjct 48566 TCGAGCTGCTTT--CCAGCGAAGATGAGTCTCTGCTGGTCAGGAGGGATGCCCTCCTTGT 48509 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 | || || || || || |||| | | |||||||| ||| || ||||| || || | Sbjct 48508 CCTGGATCTTCGCCTTCACGTTCTCAATGGAGTCTGAACCCTCAACCTCAAGGGTGATCG 48449 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 | |||||||| || ||||||||||||| ||||| || Sbjct 48448 TCTTGCCCGTAAGCGTCTTCACGAAGATTTGCATCTT 48412 Score = 116 bits (128), Expect = 9e-21 Identities = 154/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| | ||||| || || || ||||||||||| || || ||||| | ||||| Sbjct 49083 GAGGACCAAGTGAAGCGTCGATTCCTTTTGGATGTTATAGTCACTCAAAGTGCGGCCATC 49024 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || ||||| || ||||| | | |||||| || | | ||||||||| || || Sbjct 49023 CTCAAGTTGCTTCCCAGCAAAGATCAATCGCTGCTGATCTGGGGGGATTCCTTCTTTGTC 48964 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 |||||| || |||||| | || | || || | ||| ||||| | || || || Sbjct 48963 TTGAATCTTAGCTTTGACGTTTTCGATCGAATCAGAGCCCTCGACTTCCAATGTGATCGT 48904 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 |||||||||||| ||||||||||| | ||||||| Sbjct 48903 TTTGCCCGTGAGGGTCTTCACGAAAATCTGCATT 48870 Score = 107 bits (118), Expect = 4e-18 Identities = 154/215 (72%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || ||||| || ||||| ||||| || |||||||| || ||| || || | ||||| Sbjct 48854 AGAACAAGGTGGAGAGTGGACTCCTTCTGGATGTTATAGTCGCTCAAGGTGCGGCCATCC 48795 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || ||||| |||||||||||||| | || || || | | |||||||| || | Sbjct 48794 TCCAGTTGCTTT--CCGGCGAAGATAAGACGTTGTTGATCTGGGGGAATTCCTTCTTTGT 48737 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 ||||||| || ||| || |||| | | ||| || | || || || ||||| || | Sbjct 48736 CTTGAATCTTAGCTTTCACGTTCTCGATGGAGTCAGATCCTTCAACCTCGAGAGTGATGG 48677 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 | || || || | || |||||||||| ||||||| Sbjct 48676 TCTTTCCTGTCAACGTTTTCACGAAGATCTGCATT 48642 Score = 84.2 bits (92), Expect = 5e-11 Identities = 138/197 (70%), Gaps = 4/197 (2%) Strand=Plus/Minus Query 151911 GACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAG--GCTTTTCCCGG 151968 ||||| || ||||||||||| || ||||| | |||||||| | ||||| |||| Sbjct 49651 GACTCCTTCTGGATGTTGTAGTCACTCAAAGTGCGGCCATCTTCCAACTGCTTT--CCGG 49594 Query 151969 CGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGA 152028 |||||||||| | || || || | | ||||||||||| || || || || || | Sbjct 49593 CGAAGATAAGACGTTGTTGATCTGGGGGAATTCCTTCCTTGTCCTGGATCTTAGCCTTCA 49534 Query 152029 CAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCT 152088 || |||| | || || | || || || ||||| || || || || || | || | Sbjct 49533 CATTCTCGATCGAATCGGATCCTTCAACCTCGAGAGTGATGGTCTTTCCGGTCAACGTTT 49474 Query 152089 TCACGAAGACCTGCATT 152105 ||||||||| ||||||| Sbjct 49473 TCACGAAGATCTGCATT 49457 >seq2252 Length=1130325 Score = 141 bits (156), Expect = 2e-28 Identities = 162/216 (75%), Gaps = 4/216 (2%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || ||||| || ||||| ||||| ||||||||||| |||| | || || ||||| Sbjct 562717 GAGAACCAGATGGAGCGTAGATTCTTTCTGGATGTTGTAGTCGGACAGGGTCCTTCCATC 562776 Query 151952 TTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTT 152009 || || ||||| ||||||||||| | | |||||| || | | |||||| || || Sbjct 562777 CTCGAGCTGCTTT--CCGGCGAAGATCAAGCGCTGCTGATCTGGGGGGATTCCCTCTTTA 562834 Query 152010 TCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATA 152069 |||||||| ||| ||||| | || | | |||| |||| ||| ||||||||||| || Sbjct 562835 TCTTGAATCTTTGCCTTGACGTTTTCAATGGTGTCCGAACCCTCAACTTCAAGAGTGATG 562894 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || || || | |||||||||||| | |||||| Sbjct 562895 GTCTTTCCGGTCAAAGTCTTCACGAAAATTTGCATT 562930 Score = 138 bits (152), Expect = 3e-27 Identities = 165/222 (74%), Gaps = 4/222 (2%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | |||||| || ||||| || || || || ||||||||||| |||| ||||| | Sbjct 562208 GAGGCGGAGGACGAGGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAAAGTGCG 562267 Query 151946 CCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 ||||| || || ||||| ||||||||||| || | ||||||||| | | ||| || Sbjct 562268 GCCATCCTCGAGCTGCTTT--CCGGCGAAGATCAGGCGCTGCTGGTCTGGGGGGATGCCC 562325 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| || || || ||| ||||| |||| | | |||| |||| ||| || || || Sbjct 562326 TCCTTATCCTGGATCTTTGCCTTGACGTTCTCAATGGTGTCCGAACCCTCGACCTCCAGG 562385 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || || || || || | ||| |||||||||| ||||||| Sbjct 562386 GTGATGGTCTTTCCGGTCAAAGTTTTCACGAAGATCTGCATT 562427 Score = 122 bits (134), Expect = 2e-22 Identities = 157/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || ||||| || ||||| || || ||||||||||| |||| ||||| | ||||| Sbjct 563526 GAGAACCAGATGGAGCGTAGATTCCTTCTGGATGTTGTAGTCGGACAAAGTGCGGCCATC 563585 Query 151952 TTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTT 152009 || || ||||| ||||||||||| || | ||||||||| | | ||||| ||||| Sbjct 563586 CTCGAGCTGCTTT--CCGGCGAAGATCAGGCGCTGCTGGTCTGGGGGAATTCCCTCCTTG 563643 Query 152010 TCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATA 152069 ||||| || || ||||| |||| | | |||| || || || || || || || Sbjct 563644 TCTTGGATCTTAGCCTTGACGTTCTCGATGGTGTCAGAGGCTTCGACCTCGAGGGTGATG 563703 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || | |||||||||||||| ||||| Sbjct 563704 GTCTTTCCGGTCAAAGTCTTCACGAAGATTTGCAT 563738 Score = 111 bits (122), Expect = 4e-19 Identities = 154/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| |||||||| || || || || ||||||||||| |||| ||||| | |||||| Sbjct 563174 AGGACGAGATGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGACAAAGTGCGGCCATCT 563233 Query 151953 TCTA--GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || | ||||| ||||||||||| | | ||||||||| | | |||||||| || | Sbjct 563234 TCCAACTGCTTT--CCGGCGAAGATCAAGCGCTGCTGGTCTGGGGGAATTCCTTCTTTAT 563291 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 |||| || || || || | || | | || || | ||| || || || || || | Sbjct 563292 CTTGGATCTTGGCCTTCACGTTTTCGATAGTATCAGATCCCTCGACCTCCAGGGTGATGG 563351 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || || || | |||||||||||||| ||||| Sbjct 563352 TCTTTCCGGTCAAAGTCTTCACGAAGATTTGCAT 563385 Score = 96.9 bits (106), Expect = 8e-15 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || ||||| || || || || ||||||||||| || | || | |||||| Sbjct 562946 AGAACGAGGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCACTGAGGGTGCGGCCATCT 563005 Query 151953 TCTA--GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || | ||||| ||||||||||| | | ||||||||| | | ||||| ||||| | Sbjct 563006 TCCAACTGCTTT--CCGGCGAAGATCAAGCGCTGCTGGTCTGGGGGAATTCCCTCCTTGT 563063 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 |||| || || ||||| |||| | | |||| || || || || || || |||| Sbjct 563064 CTTGGATCTTAGCCTTGACGTTCTCGATGGTGTCAGAGGCTTCGACCTCGAGGGTGATAG 563123 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || |||||||| ||||| || |||| ||||| Sbjct 563124 TCTTTCCCGTGAGGGTCTTGACAAAGATTTGCAT 563157 Score = 96.9 bits (106), Expect = 8e-15 Identities = 155/221 (70%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | |||||| |||||||| || || || || ||||||||||| ||| | || | Sbjct 563748 GAGGCGGAGGACTAGATGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGCTGAGGGTGCG 563807 Query 151946 CCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 ||||| || || ||||| ||||||||||| || | |||||| || | | || || Sbjct 563808 ACCATCCTCGAGCTGCTTT--CCGGCGAAGATCAGGCGCTGCTGATCGGGAGGAATGCCC 563865 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| || || || || ||||| | || | |||| || || || || || Sbjct 563866 TCCTTGTCCTGGATCTTAGCCTTGACGTTTTCGATAGTGTCAGAGGCTTCGACCTCGAGG 563925 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || |||||||| ||||| ||||||| ||||| Sbjct 563926 GTGATGGTCTTTCCCGTGAGGGTCTTGACGAAGATTTGCAT 563966 >seq1859 Length=77309 Score = 91.5 bits (100), Expect = 3e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || || |||||||| || | ||||||||| | || |||||||||||| |||||||| || Sbjct 72680 TTACCTGCGAAGATGAGGCGCTGCTGGTCAGGCGGGATTCCTTCCTTGTCTTGAATCTTG 72621 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 || || |||| | |||| || || || || || || || ||||| |||||| Sbjct 72620 GCCTTCACGTTCTCGATCGTGTCGGAGGCTTCGACCTCGAGCGTGATCGTTTTACCCGTG 72561 Query 152082 AGAGTCTTCACGAAGACCTGCAT 152104 || || || ||||||| |||||| Sbjct 72560 AGGGTTTTGACGAAGATCTGCAT 72538 >seq1739 Length=92152 Score = 87.8 bits (96), Expect = 4e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || ||||| ||||| || | |||||||| | | ||| |||||||| || || ||||| Sbjct 75946 TTACCGGCAAAGATCAGACGTTGCTGGTCTGGAGGGATGCCTTCCTTGTCCTGGATTTTG 75887 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 ||||| |||| | | |||| ||| || || ||||| || || ||||| ||| Sbjct 75886 GCCTTGACGTTCTCAATGGTGTCGCTTGCCTCGACCTCCAGAGTGATCGTCTTGCCGGTG 75827 Query 152082 AGAGTCTTCACGAAGACCTGCAT 152104 || ||||||||||||| |||||| Sbjct 75826 AGCGTCTTCACGAAGATCTGCAT 75804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153778460545744