Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_031946.1 Length=40443 Score E Sequences producing significant alignments: (Bits) Value seq2599 190 5e-44 seq1458 165 2e-36 seq2629 145 2e-30 seq2774 109 1e-19 seq2561 102 2e-17 >seq2599 Length=15424 Score = 190 bits (210), Expect = 5e-44 Identities = 368/533 (69%), Gaps = 10/533 (2%) Strand=Plus/Plus Query 39822 CAGCATGACTGGCTTAATGGGTGGCTTGAGCTATGGGGGGCATGGGTTTATTCGGGTCGT 39881 ||||| |||||| || || ||| | | | ||||||||||||||| | || | Sbjct 11627 CAGCAGGACTGGATTGATAACTGGTTAAATTTGTGGGGGGCATGGGTTCACAGTGGCAGA 11686 Query 39882 CTGGAAAAGCGCATGAGCAGCGTAATAGCGAAGTTCATGGAGAGCGTAGAGCCGGG-AAG 39940 | || |||||| || | | | || ||||||||| || || ||||| | ||| Sbjct 11687 ATCGATAAGCGCCAGATAAACATGATTTATAAGTTCATGATGACTGTTGAGCCTCGCAAG 11746 Query 39941 AGTTATGACAAGACCAATGTGCAATGATGATGATGGAATGTTGATTTCTCAGGTCGTCGA 40000 | | ||| | || ||||||||||||||||||| ||||||||||||||||| ||||| Sbjct 11747 GGGCAAGACC-GCCCTGTGTGCAATGATGATGATGGTATGTTGATTTCTCAGGTGGTCGA 11805 Query 40001 TTCCGTCATGTACATTGACAAGAAAGCCTTTGGCATCCTCCTCAGCTACTACGCTCATGG 40060 | |||| |||| ||||||| | ||||||| ||| || | ||||||||||||||||| || Sbjct 11806 TGCCGTTATGTGCATTGACCAAAAAGCCTATGGGATTTTACTCAGCTACTACGCTCACGG 11865 Query 40061 TTCATCCAAGCGAGCAATTGCATCCTACTATCACGCGACTGCAAAGCCACGCAAGATG-T 40119 |||| |||| ||||| || | || |||||| || ||| || || |||| ||| | Sbjct 11866 CGCATCGAAGCTGTCAATTTCAACTTATTATCACAAGATTGCGAAACCCCGCAGAATGAT 11925 Query 40120 GTGGACGGGGTGGCGATGGATGGAGAAAACCTTCACTGGCAACCTGTAGAAATGAAATTG 40179 | | || ||||| | | || || ||||| | | || ||| | |||| | | Sbjct 11926 GACG-CGCTCTGGCGGGCGCTTAAGGAAGCCTTCTCGTGGGACATGTCGCCGTGAAGTGG 11984 Query 40180 ACGACATCCTGAAAGCGTCATTATTT--GTTTTATACCAGCCAATGCAAAATGCTTTCAA 40237 | || || ||| ||| || | ||| | ||||| ||||| |||||||||| || || Sbjct 11985 ATGAAATTCTGGCAGC--CAGTGTTTACCTATTATATCAGCCTCTGCAAAATGCATTTAA 12042 Query 40238 AATGCGTAAACGTGTTGAGAAAGTTAAGCATGTTGCTGTTAAAAGTCTTGACATGCAATT 40297 ||||||||||| |||||| | || | |||| | || || |||||| ||| Sbjct 12043 TTCACGTAAACGTGTAGAGAAAATCAAAAAGATTGC-CTAGAACGTGTTGACA-CTAATG 12100 Query 40298 ATCCATTTAGCCATAATTAGAGGGTAAGCTGCCGTTAGTGACTCTTAAGTTGC 40350 | | | | ||| |||||| || | | |||||| |||| ||||| || || Sbjct 12101 AGCAAATGAGCAATAATTTTTGGTAAGGTTGCCGTCAGTGTTTCTTAGGTGGC 12153 Score = 107 bits (118), Expect = 5e-19 Identities = 171/245 (70%), Gaps = 3/245 (1%) Strand=Plus/Plus Query 26641 CCAAGCATTTGCATGGTTCCACCAACGCC---AACGATGACTTCGGTAGTGAACCGATCC 26697 || ||||| ||||| || || || | | ||| | || || || || | ||||| Sbjct 15 CCCAGCATCTGCATTGTCCCGCCGATGGGGTTAACCACAACCTCCGTTGTATAACGATCT 74 Query 26698 TGTCTGCTTTGATCCTGCCATTTTCTTGTCCGCAATTTGCCTTCAAGATAAACCTCAGAA 26757 ||||| ||| || ||||| || | ||| |||||| || |||| ||||| || Sbjct 75 TGTCTCTGTTGGTCTTGCCACTTGCGTGTTTGCAATTGACCCTCAATATAAATCTGGCTG 134 Query 26758 CCTTTTCGCAGATACTCGCTGGCAATTTCTGCCAGTTTCCCGCTCATTACCACACGGTGC 26817 ||||| | |||||| || | ||||| |||||||||||| ||| || |||||||||||| Sbjct 135 CCTTTCCTCAGATATTCACCGGCAACTTCTGCCAGTTTTCCGAACAGAACCACACGGTGC 194 Query 26818 CACTCCGTCTGCTCCTTTTGCTCTCCAGTTTGCTTATCACGCCATTGTTCTGACGTAGCA 26877 || || || | ||| | |||| || | |||||| || |||| ||| || ||||| Sbjct 195 CATTCTGTTTTTTCCCTCAGCTCACCTGATTGCTTGTCTTTCCATGCTTCAGAGGTAGCC 254 Query 26878 ACTGT 26882 | ||| Sbjct 255 AGTGT 259 Score = 82.4 bits (90), Expect = 2e-11 Identities = 214/324 (66%), Gaps = 2/324 (1%) Strand=Plus/Plus Query 38471 ATGAAAACATACCGAATAAAATTGCCGTGGCCTCCTTCAAACAACCGATATTGGCGACAC 38530 ||||| || ||||| ||||| |||||||||| || ||| || | |||||| |||| Sbjct 11039 ATGAAGACTTACCGCTTAAAACTGCCGTGGCCGCCGACAATTAATCATTATTGGAAACAC 11098 Query 38531 TCAAGAGGGATCCACTACATCAGCGATTGGGGAAAGCGATACCGGCGAGAAG-TAATCGA 38589 ||||| || |||||||||| || ||| || ||||| | |||| | ||| Sbjct 11099 TCAAGGTGGGGTCACTACATCACAGAGAAGGGCAAAGATTACCGAC-AGAACATCATCAC 11157 Query 38590 AATAATTCAGCAACAACAGCTAGACCTTAAAATCACACCCCGCATCAGAATCACCATTCT 38649 | | || |||| || | ||||| | | | | ||||||||||||| || || Sbjct 11158 ACTCATCAAGCAGCAGGACTTAGACATCCTCACCCCCTCCCGCATCAGAATAACAATCAC 11217 Query 38650 CGCAGCACCTCCCGATAACCGCAAACGCGACCTGGACAATCTACCAAAGGCCGTTTTTGA 38709 ||| ||||| || ||| | | || | || || || || || || || || || Sbjct 11218 TGCACACCCTCCAGACCGACGCCGAAGAGATATCGATAACCTGCCCAAAGCGGTCTTCGA 11277 Query 38710 CGCACTCACTAGTGCGGGCTTCTGGCTGGATGACGGCCAGATAGACGATATGCGCATCAA 38769 | |||| || ||| |||||| | ||||| | ||||| || |||||||| |||| Sbjct 11278 CTCACTGACACATGCCCATTTCTGGGTTGATGATGAGCAGATTGATGATATGCGGATCAC 11337 Query 38770 GCGCTGTCAGGCGGTTAAAGGCGG 38793 ||| | | | |||||||||| Sbjct 11338 GCGGGGCGAATTGATTAAAGGCGG 11361 >seq1458 Length=11418 Score = 165 bits (182), Expect = 2e-36 Identities = 247/349 (71%), Gaps = 4/349 (1%) Strand=Plus/Minus Query 26638 CCACCAAGCATTTGCATGGTTCCACCAAC---GCCAACGATGACTTCGGTAGTGAACCGA 26694 || || | ||||||||| || || |||| | || | |||||| || ||| | ||| Sbjct 11201 CCGCCTAACATTTGCATTGTACCGCCAATCGGGTTGACAACGACTTCAGTCGTGTAACGA 11142 Query 26695 TCCTGTCTGCTTTGATCCTGCCATTTTCTTGTCCGCAATTTGCCTTCAAGATAAACCTCA 26754 ||||| | || |||||||||||||| | ||| |||| ||||| | ||| |||| | Sbjct 11141 TCCTGACCACTCTGATCCTGCCATTTACGGGTCTGCAAAGCACCTTCGATATAGACCTGA 11082 Query 26755 GAACCTTTTCGCAGATACTCGCTGGCAATTTCTGCCAGTTTCCCGCTCATTACCACACGG 26814 || ||||| ||||| ||||| | || | |||||||||||| ||| ||| ||||| ||| Sbjct 11081 GAGCCTTTACGCAGGTACTCACCAGCGACTTCTGCCAGTTTACCGAACATGACCACTCGG 11022 Query 26815 TGCCACTCCGTCTGCTCCTTTTGCTCTCCAGTTTGCTTATCACGCCATTGTTCTGACGTA 26874 ||||| || || | ||| | ||| || ||||||||||||||||| || ||||| Sbjct 11021 TGCCATTCGGTTTTCTCTCTCATCTCACCGGTTTGCTTATCACGCCAGCTCTCGGACGTG 10962 Query 26875 GCAACTGTAAGGTTTGCAAATGCCGTTCCTGATGGGTGAATATCTGATTTCTGGATCATG 26934 || | |||| ||| |||| ||| || | || ||| | | ||| ||||| || Sbjct 10961 GCCAGAGTAATGTTGGCAACTGCTCCACC-ATTCGGCATATAGCGAACTTCCGGATCCTG 10903 Query 26935 CCCAAGGCGACCAATAATGATCACCTTATTTACGCCTCTGCTTGCCATT 26983 ||| | ||| | | || || || |||||||||||||| |||||| Sbjct 10902 CCCCAAATTACCCACTAAAATAACTTTGTTTACGCCTCTGCTGGCCATT 10854 >seq2629 Length=15125 Score = 145 bits (160), Expect = 2e-30 Identities = 266/386 (69%), Gaps = 9/386 (2%) Strand=Plus/Minus Query 26635 TTGCCACCAAGCATTTGCATGGTTCCACCAACGCCAACGATGACTTCGGTAGTGAACCGA 26694 || ||||| ||||||||||| | || || | || | ||||| || ||| | || Sbjct 12597 TTACCACCTAGCATTTGCATTGACCCGCCGATATTTACTACCACTTCCGTTGTGTATCGG 12538 Query 26695 TCCTGTCTGCTTTGATCCTGCCATTTTCTTGTCCGCAATTTGCCTTCAAGATAAACCTCA 26754 || || | |||||| || |||||||| | || ||| |||||| | || |||| Sbjct 12537 TCTTGACCGCTTTGGTCTTGCCATTTACGCGTTTGCAGAGAGCCTTCGATGTATACCTGG 12478 Query 26755 GAACCTTTTCGCAGATACTCGCTGGCAATTTCTGCCAGTTTCCCGCTCATTACCACACGG 26814 |||||| |||||| |||| |||| ||| || | || ||| |||||||| || Sbjct 12477 CTTCCTTTTTTCAGATATTCGCCTGCAACTTCAGCTAACTTGCCGAAAATTACCACTCGA 12418 Query 26815 TGCCACTCCGTCTGCTC---CTTTTGCTCTCCAGTTTGCTTATCACGCCATTGTTCTGAC 26871 ||||| || || | ||| | || || || | ||| || |||||||| ||| || Sbjct 12417 TGCCATTCGGTTTTCTCGCGCATT---TCACCCGATTGTTTGTCACGCCACGATTCCGAT 12361 Query 26872 GTAGCAACTGTAAGGTTTGCAAATGCCGTTCCTGATGG-GTGAATATCTGATTTCTGGAT 26930 || || | ||| || ||||| | ||| |||| ||| || |||| ||||| || | Sbjct 12360 GTGGCTAGTGTGAGATTTGCTACTGCTCCCCCTGCTGGCATG--TATCGAATTTCAGGGT 12303 Query 26931 CATGCCCAAGGCGACCAATAATGATCACCTTATTTACGCCTCTGCTTGCCATTTATGCCG 26990 | || || | | |||| || | ||| ||||| ||||||||| | || |||||||| || | Sbjct 12302 CTTGGCCTAAGTGACCTATGAGGATTACCTTGTTTACGCCTTTACTAGCCATTTACGCTG 12243 Query 26991 CCTGTTTAAGTTCGTTAACTCTAATG 27016 ||| ||||||||| |||| || ||| Sbjct 12242 CCTCTTTAAGTTCTTTAATCCTGATG 12217 >seq2774 Length=20939 Score = 109 bits (120), Expect = 1e-19 Identities = 66/70 (94%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 40370 GGGTCAGTCGTATAAAGGTCATTACGGAAGGCTGTTAACCTTCTTATCGTGGTTCGAGTC 40429 |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| || Sbjct 20146 GGGTTAGTCGTATAAAGGTTATTACGGAAGGCTGTTAACCTTCTTATCGTGGTTCGATTC 20087 Query 40430 CACGCTGTCC 40439 |||||| ||| Sbjct 20086 CACGCTATCC 20077 >seq2561 Length=11062 Score = 102 bits (112), Expect = 2e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 16468 ATGCATCCCACTGAAGAAACTTAACGGCTGGCTGTTCAGCATTAACCCTGAGAAAGTTCG 16527 ||| || || ||||| |||||||| |||||||||||||| |||||||| | ||||||| Sbjct 10797 ATGTATTCCGCTGAAAAAACTTAATGGCTGGCTGTTCAGTATTAACCCCGCGAAAGTTAA 10738 Query 16528 TGCAGACATCCGTGACAAACTGATTAAGTACCAGGAAGAATGCTTCACCGTTCTGTATGA 16587 ||| ||| || | ||||| | | |||| ||||||||||| || | | ||| |||| Sbjct 10737 AGCAAGCATTCGCAATAAACTCACTCAGTATCAGGAAGAATGTTTTATTGCCCTGCATGA 10678 Query 16588 TTACTGGACGAAAGGT 16603 || ||||| || ||| Sbjct 10677 CTATTGGACCAAGGGT 10662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 129291602643040