Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq2252 120 3e-22 seq1739 95.1 1e-14 seq2162 93.3 4e-14 >seq2252 Length=1130325 Score = 120 bits (132), Expect = 3e-22 Identities = 167/232 (72%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || || | || || || || ||| |||||||| ||||| |||||||| Sbjct 562199 GCCACCACGGAGGCGGAGGACGAGGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGA 562258 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 | ||||| | || ||||||||||| |||||||| ||||||||||| ||||| | ||| Sbjct 562259 CAAAGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCTGGGGG 562318 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG-ACACAGTGTCGCTCGA---CT 41810 | || |||||| ||| ||| ||| ||| |||| | || || | ||| || Sbjct 562319 GATGCCCTCCTTATCCTGGATCTTTGCCTT----GACGTTCTCAATGGTGTCCGAACCCT 562374 Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | ||||||| || || || || || |||| || || ||||| |||||||| Sbjct 562375 CGACCTCCAGGGTGATGGTCTTTCCGGTCAAAGTTTTCACGAAGATCTGCAT 562426 Score = 120 bits (132), Expect = 3e-22 Identities = 166/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | || ||||| || || |||||||| ||||| |||||| | Sbjct 563740 CCTCCACGGAGGCGGAGGACTAGATGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGCTG 563799 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || ||||||||||| |||||||| ||||||||||| || || | ||| Sbjct 563800 AGGGTGCGACCATCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGATCGGGAGGA 563859 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||||||| || | || || | ||| | | |||||| | || || Sbjct 563860 ATGCCCTCCTTGTCC-TGGATCTTAGCCTTGACGTTTTCGATAGTGTCAGAGGCTTCGAC 563918 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGT 41864 ||| | || || || || ||||| || ||||| ||||| || ||||||| Sbjct 563919 CTCGAGGGTGATGGTCTTTCCCGTGAGGGTCTTGACGAAGATTTGCATGT 563968 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| || || | |||||||| ||||| |||||||| ||||| |||||||| Sbjct 563512 CCACCGCGAAGGCGGAGAACCAGATGGAGCGTAGATTCCTTCTGGATGTTGTAGTCGGAC 563571 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | ||||| | || ||||||||||| |||||||| ||||||||||| ||||| | |||| Sbjct 563572 AAAGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCTGGGGGA 563631 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | | ||||||||| ||| || ||| | | | ||||| | || ||| Sbjct 563632 ATTCCCTCCTTGTCTTGGATCTTAGCCTTGACGTTCTCGATGGTGTCAGAGGCTTCGACC 563691 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | || || || || || |||| ||||| ||||| || ||||| Sbjct 563692 TCGAGGGTGATGGTCTTTCCGGTCAAAGTCTTCACGAAGATTTGCAT 563738 Score = 100 bits (110), Expect = 3e-16 Identities = 163/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| || || | |||||||| ||||| || ||||| ||||| |||||||| Sbjct 562703 CCACCGCGAAGGCGGAGAACCAGATGGAGCGTAGATTCTTTCTGGATGTTGTAGTCGGAC 562762 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| | | || ||||||||||| |||||||| |||| |||||| || || | ||| Sbjct 562763 AGGGTCCTTCCATCCTCGAGCTGCTTTCCGGCGAAGATCAAGCGCTGCTGATCTGGGGGG 562822 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGA---CTC 41811 | | ||| || | | ||| | ||||| | ||| | | ||||| ||| ||| Sbjct 562823 ATTCCCTCTTTAT-CTTGAATCTTTGCCTTGACGTTTTCAATGGTGTC---CGAACCCTC 562878 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || | || || || || || |||| ||||| |||||||| ||||| Sbjct 562879 AACTTCAAGAGTGATGGTCTTTCCGGTCAAAGTCTTCACGAAAATTTGCAT 562929 >seq1739 Length=92152 Score = 95.1 bits (104), Expect = 1e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 41719 CTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTT 41778 ||| |||||||| ||||||||||| ||||| | |||| | |||||||||| ||| || Sbjct 77047 CTTACCGGCGAAGATCAGGCGCTGCTGGTCTGGTGGAATTCCCTCCTTGTCCTGGATCTT 76988 Query 41779 TTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGT 41838 ||| | | | |||||||| | ||| ||||||| || ||||| || || || Sbjct 76987 GGCCTTGACGTTCTCGATGGTGTCGCTAGCCTCGACCTCCAGAGTGATCGTCTTGCCGGT 76928 Query 41839 CAGCGTCTTTACGAAAATCTGCATG 41863 ||||||||| || || ||||||||| Sbjct 76927 CAGCGTCTTGACAAAGATCTGCATG 76903 Score = 82.4 bits (90), Expect = 7e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| ||||| | || || ||||||||| ||||||||| ||||| ||||| || Sbjct 77178 GCCACCGCGGAGACGGAGGACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGA 77119 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCC 41724 ||||||||| | || || |||||||| || Sbjct 77118 GAGGGTGCGTCCATCCTCAAGCTGCTTTCC 77089 >seq2162 Length=74254 Score = 93.3 bits (102), Expect = 4e-14 Identities = 162/233 (70%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | || || || ||||| |||||||| ||||| |||||| Sbjct 48641 CCTCCCCGAAGGCGAAGAACTAGGTGAAGCGTCGATTCCTTCTGGATGTTGTAGTCGCTC 48582 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | ||||| | || ||||||||||| || ||||| || || | ||| ||||| | || Sbjct 48581 AAAGTGCGGCCATCTTCGAGCTGCTTTCCAGCGAAGATGAGTCTCTGCTGGTCAGGAGGG 48522 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGA---CTCC 41812 | || |||||||||| ||| || |||| ||| | || || | || ||| Sbjct 48521 ATGCCCTCCTTGTCCTGGATCTTCGCCTTC-ACG--TTCTCAATGGAGTCTGAACCCTCA 48465 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||||| | || ||||| || ||||| |||||||| ||||| || ||||| || Sbjct 48464 ACCTCAAGGGTGATCGTCTTGCCCGTAAGCGTCTTCACGAAGATTTGCATCTT 48412 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | || || || || ||| ||||||||| |||||||||||| Sbjct 48869 CCTCCTCGGAGGCGAAGAACAAGGTGGAGAGTGGACTCCTTCTGGATGTTATAGTCGCTC 48810 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | |||||| | || || || ||||| |||||||| || || || ||||| || | |||| Sbjct 48809 AAGGTGCGGCCATCCTCCAGTTGCTTTCCGGCGAAGATAAGACGTTGTTGATCTGGGGGA 48750 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACG-ACGACACAGTGTC-GCTCGACTCCA 41813 | | || |||| | ||| | || |||| ||| | | | ||| | || || | Sbjct 48749 ATTCCTTCTTTGT-CTTGAATCTTAGCTTTCACGTTCTCGATGGAGTCAGATC-CTTCAA 48692 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| | || || || || || |||| ||| || ||||| |||||||| Sbjct 48691 CCTCGAGAGTGATGGTCTTTCCTGTCAACGTTTTCACGAAGATCTGCAT 48643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462287449516800