Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20papillosus_20[genbank_20GCA_5F000936265.1_202014-11- 13] 4,703 sequences; 60,447,969 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq21 187 5e-42 seq7 86.0 1e-11 seq3 86.0 1e-11 >seq21 Length=323752 Score = 187 bits (206), Expect = 5e-42 Identities = 274/384 (71%), Gaps = 4/384 (1%) Strand=Plus/Plus Query 61081 GAATTTGTCAAGCATCAACATCTGAACTGTATGGAAAAGTTCAAGAAATTCCTCAAACAG 61140 || ||| ||||| || || || ||||| ||||||||||| |||||||| || |||| || Sbjct 162437 GATTTTACCAAGCTTCTACCTCAGAACTTTATGGAAAAGTCCAAGAAATCCCCCAAAAAG 162496 Query 61141 AAAGGACTCCGTTTTATCCTCGTAGCCCGTATGGTGTTGCAAAACTATACGCTTACTGGA 61200 | | || || |||||||| || || || |||| || |||||| | |||||||| |||| Sbjct 162497 AGACAACACCATTTTATCCACGAAGTCCATATGCAGTAGCAAAATTGTACGCTTATTGGA 162556 Query 61201 TTTGTAAAAATTACCGCGAGTCGTATGGAATGTTTGTATGTAACTCGATTTGTTTCAATC 61260 | ||||||||| || || | |||||||| |||| || || |||| || |||| Sbjct 162557 TAATTAAAAATTATCGTGAAGCATATGGAATATTTGCTTGCAATGGTATTTTATTTAATC 162616 Query 61261 ACGAGAGTCCCAATAGAGGTCATCAGTTTGTGACTCGTAAAATTACGAAGGCGGTTGCAA 61320 | || || | |||||| || | ||||| || | |||||||| | ||| || || | Sbjct 162617 ATGAATCACCAAGAAGAGGTAATAACTTTGTAACAAGAAAAATTACAAGGGCTGTAGCTA 162676 Query 61321 ATATTTTTAACGGTGTCGAAAAATGCATGTAT--CTAGGAAACATAGACTCTAAAAGAGA 61378 | ||| || ||||| || || ||| ||| || || || | || ||||| | || Sbjct 162677 AAATTAGTATAGGTGTTCAAGAA-ACAT-TATTACTTGGTAATTTGGATGCTAAACGTGA 162734 Query 61379 TTGGGGATATGCGGAAGATTATATCGAGGCTATGTGGTTGATGTTGCAACAAGATACTCC 61438 |||||| |||| |||| ||| | || ||||||||| || | ||||| ||| || Sbjct 162735 TTGGGGTCATGCAAAAGAGTATGTTGAAGCTATGTGGAGAATTCTTCAACACGATGAACC 162794 Query 61439 AGATGACTACGTTATTGCGACTGG 61462 |||||||| |||||||| || || Sbjct 162795 AGATGACTTTGTTATTGCTACAGG 162818 >seq7 Length=725563 Score = 86.0 bits (94), Expect = 1e-11 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 165706 GCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTC 165765 || |||||| |||||||||||||||||| ||||||| ||||||||| |||| |||||| Sbjct 519837 GCATGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTC 519896 Query 165766 GAGCCCC 165772 ||||||| Sbjct 519897 GAGCCCC 519903 >seq3 Length=1139157 Score = 86.0 bits (94), Expect = 1e-11 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 165706 GCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTC 165765 || |||||| |||||||||||||||||| ||||||| ||||||||| |||| |||||| Sbjct 197029 GCATGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTC 196970 Query 165766 GAGCCCC 165772 ||||||| Sbjct 196969 GAGCCCC 196963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057760258500890