Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20papillosus_20[genbank_20GCA_5F000936265.1_202014-11- 13] 4,703 sequences; 60,447,969 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq21 125 7e-24 >seq21 Length=323752 Score = 125 bits (138), Expect = 7e-24 Identities = 446/687 (65%), Gaps = 14/687 (2%) Strand=Plus/Plus Query 16694 TTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCCATGAAATCAAAAGGATTA 16753 || || || || || |||||||| || | || | ||| |||| |||||||| || || Sbjct 30276 TTCTCAAAGAAATTGGTTTTGCCTTCAATTGAGAGATTAACCATAAAATCAAATGGGTTC 30335 Query 16754 GTAGC-TGAAAATATTTTAGAGTACCCCAGTTCGGCGATTAATCTATCCGCTACAAATTC 16812 ||| | | || ||| || | ||||| | | || ||| || ||| | || Sbjct 30336 TTAGTATTATAAAGCTTTTGACAATTA-AGTTCTACCAATAGATGATCGGCAACATACTC 30394 Query 16813 TATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGTACCGGAAGAGCTTCCGT 16872 ||||| | |||||||| | | |||||||| || | | || |||||||| || || Sbjct 30395 GATATAATCACACATTAAACCTGAATTCATTCCGATCATATCAACAGGAAGAGCATCAGT 30454 Query 16873 CAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATACTAGCAACTCGTTCCTCGGA 16932 | | || | || ||| ||| || || |||| || | ||||| || || Sbjct 30455 AAGATATTCCTTTTCAATACTAACGGCATCTCTAATTATTTCCTTTATACGTTCTTCAGA 30514 Query 16933 CGG--TGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCCCTCG 16990 || ||| | | ||| | | |||| |||||||| ||||| | ||||| ||||| Sbjct 30515 TGGCTTGT-TCTCCAAG-TAACTGTACATAAGACATGCAAAATCACGGTGTAACCCCTCA 30572 Query 16991 TCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAAC 17050 |||| | || | || || ||| ||| |||||||||||| || |||||||| | | Sbjct 30573 TCTCGGGAAATCAACTCATTCGAATGTGTTAACCCGGGCATCAAGCCACGTTTCTTAAGC 30632 Query 17051 CAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATT 17110 || ||||| || || || || ||||| |||||||| || || || | |||||| || ||| Sbjct 30633 CAGAATATGGCAGCAAATGAACCAGAGAAGAATATTCCTTCAACAGCTGCAAAAGCAATT 30692 Query 17111 AATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTT 17170 | ||||| | | || |||| ||||| ||||||| | | |||| || ||||| Sbjct 30693 ACACGTTCTCCAAAAGTAGCGTTTTTGTCGGCAATCCATCTTAGAGCCCAATCAGCTTTC 30752 Query 17171 TGCTTTATGCAATCCATCGTTTCTATGGCCTTAAA----TAATTTCTCTTTTTCCTGTAG 17226 | | ||| || | || | || || || | ||||||| | ||||| | Sbjct 30753 TTTCTGATGAAAGGAAATTCATCCAAAGCGTTGAAGAGTTTATTTCTC-TCATCCTG-AT 30810 Query 17227 GTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGC 17286 ||| || || || || || ||| |||||| || || || || |||||||| Sbjct 30811 CACGA--ATGTAGGTTTCAATAAGTTTCGAGTACATCTCACTATGAATATTTTCCATGGC 30868 Query 17287 TATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTC 17346 || ||||| || || || | || || || | | || |||||| | |||| ||| Sbjct 30869 AATTTGAAAACCATAGAAAAAGCGTGCCTCGGGGACCTGGACTTCCTTTGAAAATCTTTC 30928 Query 17347 CGCTAGATTTTCGTTCACGATGCCGTC 17373 ||| ||| ||||| ||||| || || Sbjct 30929 AACTAAATTCTCGTTAACGATACCATC 30955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517515174788040