Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20papillosus_20[genbank_20GCA_5F000936265.1_202014-11- 13] 4,703 sequences; 60,447,969 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq21 163 3e-35 >seq21 Length=323752 Score = 163 bits (180), Expect = 3e-35 Identities = 399/601 (66%), Gaps = 8/601 (1%) Strand=Plus/Plus Query 16036 ATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTATAAGTCGTAC 16095 ||| || ||| | || ||||| | ||||||||| | |||| ||||| || | || Sbjct 30380 ATCGGCAACATACTCGATATAATCACACATTAAACCTGAATTCATTCCGATCATATCAAC 30439 Query 16096 CGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATATCGGT 16155 |||||||| | || | | ||| | ||| || ||| || ||| |||| || || | Sbjct 30440 AGGAAGAGCATCAGTAAGATATTCCTTTTCAATACTAACGGCATCTCTAATTATTTCCTT 30499 Query 16156 GGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAAGTCGCA 16215 ||| |||||| || | | | | || | |||| ||||| || || || | Sbjct 30500 TATACGTTCTTCAGATGGCTTGTTCTCCAAGTAACTGTACATAAGACATGCAAAATCACG 30559 Query 16216 ATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCC 16275 |||| || || |||| | || | || || ||| |||||||| ||||| || Sbjct 30560 GTGTAACCCCTCATCTCGGGAAATCAACTCATTCGAATGTGTTAACCCGGGCATCAAGCC 30619 Query 16276 TCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGA 16335 |||||||| | ||||||||| ||||||||||| || || |||||||| || ||||||| Sbjct 30620 ACGTTTCTTAAGCCAGAATATGGCAGCAAATGAACCAGAGAAGAATATTCCTTCAACAGC 30679 Query 16336 TGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGTAC 16395 ||||||||| |||| ||||| | | ||||| | ||| | ||||||| | | | Sbjct 30680 TGCAAAAGCAATTACACGTTCTCCAAAAGTAGCGTTTTTGTCGGCAATCCATCTTAGAGC 30739 Query 16396 CCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACA----ATTTCT 16451 ||| || ||||| | | | || || | || | || || || | |||||| Sbjct 30740 CCAATCAGCTTTCTTTCTGATGAAAGGAAATTCATCCAAAGCGTTGAAGAGTTTATTTCT 30799 Query 16452 CTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTA 16511 | | ||||| || ||| || || || ||||| ||| |||||| || || | Sbjct 30800 C-TCATCCTG-ATCACGA--ATGTAGGTTTCAATAAGTTTCGAGTACATCTCACTATGAA 30855 Query 16512 TGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCA 16571 | || || ||||| || ||||| |||||||| | || ||||| | | || |||||| Sbjct 30856 TATTTTCCATGGCAATTTGAAAACCATAGAAAAAGCGTGCCTCGGGGACCTGGACTTCCT 30915 Query 16572 CGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCA 16631 |||||| ||| | | ||||| || |||||||| || ||||||||| || || | Sbjct 30916 TTGAAAATCTTTCAACTAAATTCTCGTTAACGATACCATCCGATGCAGCAAAGAAGGCTA 30975 Query 16632 A 16632 | Sbjct 30976 A 30976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511384335225960