Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20papillosus_20[genbank_20GCA_5F000936265.1_202014-11- 13] 4,703 sequences; 60,447,969 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq5 271 5e-68 >seq5 Length=897882 Score = 271 bits (300), Expect = 5e-68 Identities = 501/728 (69%), Gaps = 9/728 (1%) Strand=Plus/Minus Query 101533 TTAAACAGCCATATGCATTTTAATTATAGGGTGTGGGTTATAGTTTTCTAATATAATGTC 101592 ||| ||||||||| ||||||||||| ||| || | | ||| || || | ||||| | Sbjct 895772 TTAGACAGCCATACTCATTTTAATTAAAGGATGAGATTCATAATTCTCAAGAATAATATT 895713 Query 101593 ATCTGCTTTAAAGTCATCAAT-GCATGAAACATTTCT--AGCAAATCTAAGTGTTGGAAA 101649 || | |||| |||||||| | || || | ||| | ||||||||| ||||||||| Sbjct 895712 CTCCGAAGTAAAATCATCAATTGTATTTAAATTATCTCCAACAAATCTAATTGTTGGAAA 895653 Query 101650 CGGTCTAGGAGT-TCGCGTCAACTGCATTTTAAGAGCATCAATGTGATCTACATAGATGT 101708 || |||| | ||| ||||| || ||| ||||||||| | || | | ||| || | Sbjct 895652 TGGG-TAGGGTTCTCGAGTCAATTGTTGTTTCAGAGCATCAGTATGGTTTTTATAAATAT 895594 Query 101709 GAGCATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATGAGCAATCA 101768 ||||||| || ||||| || | ||| || |||| || | | | ||||||| Sbjct 895593 GAGCATCGCCAATAGTGTGAACAAAATCACCAGTTGTTATTCCACAAATTTTTGCAATCA 895534 Query 101769 TGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATATCA--GC 101826 | ||| ||||| || || ||||||||||||||| ||||| || || | |||| || Sbjct 895533 TATGAGTCAAAAGTGAGTACGAAGCAATGTTAAATGGAACTCCCAAACCAACATCACCGC 895474 Query 101827 TGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAAAATTGACTTAATAC 101886 || | |||||||| ||||| | || ||||| |||||||||||| || | Sbjct 895473 TG--CGTTGATACAAGTGACAACTTAACTCCCCATCTTGAACATAAAATTGAACTAGTGT 895416 Query 101887 ATGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCAAGCACACATTAACAT 101946 |||||| || ||||| ||||||| | || || || |||||||||| | | | || Sbjct 895415 ATGACATGGAGGCAAAACCATTTCACCAAGATCAGATGGATTCCAAGCAGATAAGATAAT 895356 Query 101947 CCTTCTATCTGTAGGGTTTGTTTTTATAGTATCAATCAACTGTTTTAATTGGTCAACTCC 102006 ||||| | |||||| | ||||| ||||| | | | || ||| |||||||| Sbjct 895355 TCTTCTTGAAGAAGGGTTGTTCTTTATTTGGTCAATAACATTTGCTAGTTGATCAACTCC 895296 Query 102007 TTCTCCTTTATAATCGCGCCCAACACCTTTATATTCTGCTCCGAAATGCCTCCACTGAAA 102066 || |||| | || || |||| || | ||||| || || ||||| ||||| || || Sbjct 895295 TTTTCCTGTGTAGTCAGCATCAACTCCCTCATATTTAGCACCAAAATGTCTCCATTGGAA 895236 Query 102067 TCCATACACAGGTCCAAGATCTCCTTCATCTCTGTCATAAAAACCAAGTTTATCTAAAAA 102126 ||||| |||||||| | ||| ||||| ||| ||| ||| || || |||| | ||| Sbjct 895235 CCCATAAACAGGTCCCAAATCACCTTCTGGTCTTTCAGTAAATCCTAGACTATCAAGAAA 895176 Query 102127 TGATCTAGATCCATTCGCATCCCAAATGTGCACGCCAGCTGCTGATAGCTCTTTGCTGTC 102186 |||| |||||| ||||||||||| | || || || || ||||| | Sbjct 895175 CTGTCTACTTCCATTTGCATCCCAAATCTTAACACCTCGGGCATTTAATTCTTTTGCATT 895116 Query 102187 AGTAGATCCTCTGATAAACCACAACAGTTCTTCAACAACACCTCTCCAAAATACTCTCTT 102246 ||| ||| ||||||||||| ||||||||||||| |||| ||||||| | | || Sbjct 895115 AGTGCTTCCCGAAATAAACCACAAAAGTTCTTCAACAATACCTTTCCAAAACGTTTTTTT 895056 Query 102247 AGTAGTTA 102254 ||| |||| Sbjct 895055 AGTTGTTA 895048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361230493871453