Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20papillosus_20[genbank_20GCA_5F000936265.1_202014-11- 13] 4,703 sequences; 60,447,969 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq1 475 4e-129 seq64 217 2e-51 >seq1 Length=1686976 Score = 475 bits (526), Expect = 4e-129 Identities = 1360/2062 (66%), Gaps = 73/2062 (4%) Strand=Plus/Plus Query 52828 TGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAA 52887 ||| ||||| || | || ||| |||||||| ||||| | ||| |||| || ||||| Sbjct 914631 TGCCGGTTTAGTTCTTAAATAATACATTCCTGTTTTCAAACCATTTTTCCAACCATAAAA 914690 Query 52888 ATGCAT---ACTTGTTAGTTTGGAATAACTCGGATCTGCT-ATATGGATATTCATAGATT 52943 |||||| ||| || | |||| | || ||| | | ||| | ||| | |||| Sbjct 914691 ATGCATTGAACTACATATTCC---ATAAGTTGG-TCTATTTACATGAAGATTAAGTGATT 914746 Query 52944 GACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAA 53003 || |||||| | |||| || | || ||||||| || || | |||||||||| Sbjct 914747 GAGATTGATCAACAAAGGGACCACGATCAATTGCCATTTCAATAATAGCTTTTTGTGGAA 914806 Query 53004 TTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGTT---TGTATTCTGAA 53060 ||||||||| ||||||||||| | | |||| | ||||| | | |||| |||| Sbjct 914807 TTTCCCAAACAGTTTTATAAAGTTCTCTGATATGTAATGGAATATCGCATATATTTTGAA 914866 Query 53061 TAGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGG 53120 |||| ||| || | | || || ||| || || || ||||| | | | || Sbjct 914867 TAGACCCATTATTTTCAATTATTTGATTAAGAATTTCCTCGTTCCAAA---TACCAAGGG 914923 Query 53121 T---TAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCC 53177 | |||| ||| |||||||| | ||| || | |||||| || ||||| || || | | Sbjct 914924 TAATTAAATCTCGTAGGAGATGAGTATTTACAATTTGAAAATCACCAGATAAAACCCGTC 914983 Query 53178 GAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAG 53237 || || | ||| || || ||||| | ||| |||||| | || | ||| |||| | Sbjct 914984 TTGTATATAAATTTGATGTGTATGGTTCAATAGATTCATTACTGCCAAGAATCTGAGATG 915043 Query 53238 TTGATGCAGTCGGCAT---AGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGA 53294 | || ||||| ||||| || | | | |||| || || | || || || | | Sbjct 915044 TAGAAGCAGTGGGCATTAAAGATACTAACAATGAATTA---CGAATGCCAAATTTAGAAA 915100 Query 53295 TTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNN 53354 |||| || || | | || ||||||||| | || || ||| Sbjct 915101 TTTTCTCCTTCAAACTTTTCCAATTCCATAAATTGCTTGGAGTAACACCCCACATGTCAT 915160 Query 53355 NTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCT 53414 || ||||| || ||| | ||||| || |||| || || | ||| | ||| Sbjct 915161 ACTGAAGAATTCCTTTAGATACAGGTGATCCATCAAATGTTTCATAGGATCCATGAATCT 915220 Query 53415 CAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTAT 53474 |||| |||||| ||||| | |||||| | |||||| ||||| ||||| ||||||| Sbjct 915221 TTGCTAATTCACAGGAAGCCTCAAGTGCACCATGATAAATAGTTTCAAAGATTTTCTTAT 915280 Query 53475 TTAGATCTTGTGCTTCCAG-GCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCT 53533 | |||||| ||||| | | | | ||||||||| || | ||| | ||| || ||||| Sbjct 915281 TGAGATCTCTAGCTTCTGGTGATGT-AAATGGATATTTCATGAGTAAAAATGCATCTGCA 915339 Query 53534 AATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGA 53593 | |||||| || ||||| || ||||| | |||| | |||| || | || || Sbjct 915340 AGTCCTTGTACTCCAATTCCAATAGGACGATGTTTAGTATTTGATAAACGTGCCTCCTCC 915399 Query 53594 ATAGGATAATAATTAATATCTATAATTTTATTGAGGTT-TCTGACAATTACTTTGACCAC 53652 | ||||||| ||||||||| |||| || || | || | || ||| |||| ||| Sbjct 915400 AGTGGATAATGATTAATATCAATAACCTTGTTCAAATTCTTTGTCAAAATTTTTG-CCAT 915458 Query 53653 ATCCTTCAG---TTTGAGAAAATCAAA--------TTGTCCATCTATT----ACAAACAT 53697 | | || ||| ||||||||| || || | || | ||||| | Sbjct 915459 GTTATGAAGACGTTT---AAAATCAAAAACACGTTTTTTCTCTTTAATCACGACAAAATT 915515 Query 53698 GTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTAT 53757 || | ||||||||| ||| ||||||||| || || ||||||| | | |||| | Sbjct 915516 ATTAAGTGCAATAGACCCCAAATTACAAACAGCAACTTCATTAGGGGAAGAAAATTGAAC 915575 Query 53758 TATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTT 53817 || |||| |||||||| ||| || || ||||||||||||||||||||||| || Sbjct 915576 AATTTCAGCACAAAGATTTGAACATTTTATTGTTCCTAAATTTTGTTGATTACTTTTACG 915635 Query 53818 GTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAAT 53877 |||||| |||||| ||||| || |||| |||| || || ||||| ||||| ||| Sbjct 915636 GTTACAATGATCCTTGTAAAGCATATATGGAATACCCGTCTCTATCTGAGATTCACAAAT 915695 Query 53878 CGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCTC--TTTTCTCTTTCGTAT 53935 | | ||| | | || |||| | | || ||| | ||||| |||| ||| Sbjct 915696 CTTCTGCCAAATATATCTGGCTTTTACTT--GTTTCCTATAACGATTTTCATTTTCATAT 915753 Query 53936 AGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCC 53995 || || | | ||||| || || || || || || | || |||||||||| Sbjct 915754 TGTACGTAAAGTTTATCAAAATCATCACCAAAACAATCATCAAGACCCGGACATTCATTA 915813 Query 53996 GGACACATCAACGACCACTCTCCGTCATCCTTCA-CTCGTTTCATAAAGAGATCAGGAAT 54054 |||||||| |||||||| | | || | |||| | ||||||||||| | ||| |||| Sbjct 915814 GGACACATTAACGACCAATGTGAATCG-CTTTCAACACGTTTCATAAATAAATCTGGAAC 915872 Query 54055 CCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAG 54114 |||||| | ||||| ||| | | ||| | ||| || |||||| |||||||| | Sbjct 915873 CCAAAGTCCGTAAAATAAATCGCGTGCTCTTTCTTCTTCTGGTCCTGTGTTCTTTTTTAA 915932 Query 54115 ATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGG 54174 || || || |||||||| | |||||| |||||||| ||||| | | | ||||| Sbjct 915933 CTCAAGAAATTGGATAATATCTGCATGCCATGGTTCCAAATATATAGCAAATGCACCAGG 915992 Query 54175 CCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG 54234 | ||| || || || ||||| | || | | | || |||| ||||| | |||||||| Sbjct 915993 TCTTTTATTGCCACCTTGATCAACATAACGAACAGTACTATTGTAAACACGTAACATTGG 916052 Query 54235 AATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATT 54294 || | |||||| || | ||||| || || || ||| | ||| ||||||| || | Sbjct 916053 AACCAAACCATTTGAAGATCCATTAGTTCCAGAAATAAATGATCCTGTGGCACGGATTGT 916112 Query 54295 ACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGT 54354 ||| || || |||| |||||| ||| | || || || | || ||||| ||||| || Sbjct 916113 ACTGATACTTAATCCTACCCCCCCAGCCGTCTTTGAAATAACAGCACATCGCTTTAAAGT 916172 Query 54355 ATCATAGATGCCCTCTATACTATCATCCATCAT-GTTAAGTAGAAAACAGCTAGACATTT 54413 |||||||| || || ||| |||||| |||| ||||| | ||| ||| | | | | Sbjct 916173 GTCATAGATTCCTTCAATAGAATCATCACTCATCGTTAA-CAAAAAGCAGGAACAAAGCT 916231 Query 54414 GGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAG 54473 | | || || || ||||||||||| || ||||| | || |||| | || | Sbjct 916232 GAGGTCGTAGGGTACCAGCATTAAATAACGTTGGAGATCCATGGATAAAAAGTCGTTTTG 916291 Query 54474 AAAGTAGAT-TGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCG 54532 | | || || |||| |||| ||||| || | ||||| |||||| || | || Sbjct 916292 ACA-TATATCTGTATGTCTGAATAGCAGATGCAATATCTTCACCATGAATACCAATGGCA 916350 Query 54533 ACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAG 54592 |||||||| | ||| || |||||||||||||| || || || |||||||||| || || Sbjct 916351 ACACGCATAAGCATATGTTGAGGTCTTTCAACAATTTTATTATTTATTTTCAATAAATAT 916410 Query 54593 GATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA---TGAAAAGTCTCGTTCGTAAA-- 54647 ||| ||| || || ||||| ||||| || |||| || ||| |||| || |||| Sbjct 916411 GATCGTTCTAATGTCTTAAATCCAAAGTA--TGTAAAGTGGAAA-TCTCTTT--TAAATC 916465 Query 54648 TAATAACTGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTAATACTTG-AA 54706 |||||||||| | | ||| | | || ||| || | || | ||| | |||| Sbjct 916466 TAATAACTGAATCCAATTTCTTCGAAT-TTTTTTGAATAATTTCATTCACTTCCTTGCTT 916524 Query 54707 ATAATCGGAGAATGTT-TCCCAT--TTTTAGGATTGACATAGTTAAATAAATCCTTCATC 54763 || | ||| |||||| |||| | | ||| | ||| | ||| | ||||| | ||| Sbjct 916525 ATCAATGGACAATGTTCTCCCGTCATATTATGTTTG---TGATTATACAAATCATCCATT 916581 Query 54764 ACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCT 54823 || | | |||| ||| || || | ||| |||| | | || || || || | ||| ||| Sbjct 916582 ACCTTAGAAAATTTTTTCTTAGTCTGTTTATGTAAAATCGAAACAGCAATACGAGCAGCT 916641 Query 54824 AGAATGGCATAATCCGGATGTT 54845 | | | |||| ||||||| Sbjct 916642 AAGACTCCGAAATCAGGATGTT 916663 >seq64 Length=153875 Score = 217 bits (240), Expect = 2e-51 Identities = 354/501 (71%), Gaps = 18/501 (4%) Strand=Plus/Minus Query 53380 CGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAA 53439 ||||||| |||| || || || ||||| || ||||| | |||||| ||||| || Sbjct 123184 CGATCCTTCATAAGTTTCATAAGGTCCATCACGTTCAGCCAATTCACATGAAGCCTCCAA 123125 Query 53440 TGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATC 53499 ||||| | ||||| |||||||| |||| ||||| || |||| |||| ||| | Sbjct 123124 GGCACCATGGTAAATTGTTTCGAAAATCTGTTTATTAAGTTCTTTAGCTTG-AGGTGAGG 123066 Query 53500 -AAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAG 53558 ||||||||| | | ||| || || || ||||| || ||||||||||||||||| || | Sbjct 123065 TAAATGGATATCTCATGAGCATGAATGCATCTGCCAAACCTTGAACACCAATACCTATTG 123006 Query 53559 GTCTATGTCTCTTATTAGAGATTTC-AGCTTCTGGAATAGGATAATAATTAATATCTATA 53617 | | |||||| ||||||| ||| | ||||||||||| || |||||||| | ||| ||| Sbjct 123005 GACGGTGTCTCATATTAGA-ATTCCTAGCTTCTGGAACTGGGTAATAATTCACATCGATA 122947 Query 53618 ATTTTATTGAGGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAG-AAAAT---- 53672 || ||||| | || ||| | | ||| | |||| | || ||||| ||||| Sbjct 122946 ATCTTATTTAAATTCCTGGTCAAAATTTTAGCAACATAGTGGAG-TTGAGTAAAATTGAA 122888 Query 53673 --CAAATTGTCCA---TCTAT---TACAAACATGTTCAATGCAATAGATGCCAGATTACA 53724 || || ||| ||||| ||||| | || | |||||||| | |||||||| Sbjct 122887 AACAGGTTTCCCATTTTCTATATCAACAAATCTATTGAGAGCAATAGACCCTAGATTACA 122828 Query 53725 AACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTT 53784 || || || |||| | ||||| | ||||| || || |||||| |||||| Sbjct 122827 TACAGCAACTTCATCTGGTGAACAATATTCAACGATCTCGGTACAGAGATTAGAACACTT 122768 Query 53785 GATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAA 53844 ||| ||||| | ||||||||||||||| || ||||| ||| ||||||| ||| | Sbjct 122767 GATAGTTCCAAGATTTTGTTGATTACTTTTCCGATTACAATGATCTTTATAAACCATGTA 122708 Query 53845 TGGCGTACCAGTTTCAATCTG 53865 || || |||||||||||||| Sbjct 122707 AGGTGTGCCAGTTTCAATCTG 122687 Score = 172 bits (190), Expect = 7e-38 Identities = 480/729 (66%), Gaps = 8/729 (1%) Strand=Plus/Minus Query 54206 GCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCG 54265 || || |||||| |||| |||||||||||||| | ||||| |||| ||||| ||||| Sbjct 122538 GCTGTATTATTAAAAACCCTCAACATTGGAATCAATCCATTTGATGTCCCATTTGTCCCA 122479 Query 54266 GAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATT 54325 ||| | ||| | || | |||| || || || || || ||||| | Sbjct 122478 CCAATAAATGAACCATTAGCTCTAATACAGTGAACATTTAAGCCAATACCACCTGCAGAT 122419 Query 54326 TTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATC 54385 || ||||| || |||||| | || | || || || || || ||||| |||| | | Sbjct 122418 TTCGAGATCAAAGCGCATTGCTTAAGTGTGTCGTAAATCCCTTCTATTGAATCACCAGCC 122359 Query 54386 AT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGT 54444 || ||||| ||||| || |||| || |||| ||||||||||| || ||||| || Sbjct 122358 ATTGTTAATAAGAAA-CATGAGGACAACTGAGGACGCCTAGTTCCCGCGTTGAATAAAGT 122300 Query 54445 AGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTC 54504 |||||||| || || ||||| || | ||| | || ||| ||||| || | || | Sbjct 122299 TGGAGAAGCATGAGTGAACCACTTCTGAGACATATAATCGTAAGTCTCAATGACAGAATT 122240 Query 54505 TATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAAC 54564 ||||| | ||||| || || || |||||||| || | || |||||||| || | Sbjct 122239 AATATCTTCTCCGTGAATCCCAACAGCAACACGCATCAATAGATGTTGAGGTCTCTCGGC 122180 Query 54565 GATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTT 54624 || || ||||| || | | || || ||||| || || ||||| ||||| Sbjct 122179 AATTTTCCCATTTATCTTTAAAAGATAAGAACGCTCCAACGTCTTGAAACCGAAATAAGA 122120 Query 54625 GTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAGTTTATCCTTATATTTGTTAAC 54684 | ||| || | | |||| ||| | ||||| |||||||| | || | Sbjct 122119 AAAGTCAAAATCCCTGTTATAAACAATTGCAGAGTTCAGTTTATCAGCGTTCTTCAGGAT 122060 Query 54685 TACATCCATGGTAATACTTGA--AATAATCGGAGAATGTTTCCCATTTTTAGGATTGACA 54742 | ||| || | ||| | || || || ||| || | || || | Sbjct 122059 GATATC--GTGTGTTTCTTTACTTATCATTGGCATATGAACTCCTGTAATATTATGGCGG 122002 Query 54743 TAGTTAAATAAATCCTTCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTT 54802 |||||| ||||||| | ||| |||||| || || ||||||| ||| || | ||| Sbjct 122001 TAGTTATATAAATCATCCATTACTTCAGAGAAACTCTTCTTTGTTTGTTTATGCATGTTT 121942 Query 54803 GATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAG-TGGC 54861 || | ||| ||||| || |||| || |||||||| ||||| ||| || || | | || Sbjct 121941 GAAATGGCGATTCTTGCTGCTAATATAGCATAATCAGGATGAATTGTTGT-CATGTTAGC 121883 Query 54862 TGCTATTTCGGCTGTCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTG 54921 ||| | ||| |||| ||| | || || || ||||||| ||| |||||||| | ||| || Sbjct 121882 TGCAACTTCTGCTGCAAGATTATCTAACTCAACCGTTGATACACCATTATACAGTCCCTG 121823 Query 54922 GATAACCTT 54930 |||||| || Sbjct 121822 GATAACTTT 121814 Score = 102 bits (112), Expect = 1e-16 Identities = 234/344 (68%), Gaps = 9/344 (3%) Strand=Plus/Minus Query 52829 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 52888 || ||||| || | || |||||||| |||||||||| || | |||| |||| |||| Sbjct 123684 GCAGGTTTAGTTCTTAAGTAGTACATCCCCGTTTTTAATCCACGTTTCCAACCGTGAAAA 123625 Query 52889 TGCATACTTGTTAGTTTGGAATAACTCGGATCT-GCTATATGGATATTCATAGATTGACT 52947 |||||| | | | ||| || ||| || | ||| | || | ||||| Sbjct 123624 TGCATAGAACTACAAATTGCATATGATGG-TCTAGCCACATGAAGGTTAAGGGATTGTGA 123566 Query 52948 TTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGA-ATTT 53006 |||||| ||||| || || | || |||||||| | || || ||||| ||| |||| Sbjct 123565 TTGATCAATGAAAGCACCACGATCAGCAGCCATCTCAATAATA-TCTTTCTGGGAGATTT 123507 Query 53007 CCCAAATAGTTTTATAAA-CTCGCTTAATATCTTCTGGAA---GGTTTGTATTCTGAATA 53062 |||| | ||||||||||| ||| |||||||| | || | ||| |||| || ||| Sbjct 123506 CCCATACAGTTTTATAAAGCTC-TTTAATATCATTGGGTATTTCTTTTATATTTTGGATA 123448 Query 53063 GATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTT 53122 |||||| ||| | || || |||| | | || || ||||||| || || || Sbjct 123447 GATCCATTATCAGCTATTATTTCATTCATTAGTTCTTCGGTCCATAAGTTAAGTTCAATT 123388 Query 53123 AAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGA 53166 ||| || |||| ||||| ||||| || | ||| || || ||||| Sbjct 123387 AAATCTTTAAGAAGATGTGGATTTACAATTTGGAAATCACCAGA 123344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593686696591440