Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20papillosus_20[genbank_20GCA_5F000936265.1_202014-11- 13] 4,703 sequences; 60,447,969 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq5 187 2e-42 >seq5 Length=897882 Score = 187 bits (206), Expect = 2e-42 Identities = 484/729 (66%), Gaps = 13/729 (2%) Strand=Plus/Minus Query 96898 TAAACAGCCATGGGCATTTTTATGCTAGGGTAAGGGTTATAGTTTTCCAGAATAATGTCA 96957 || |||||||| |||||| || ||| | || | ||| || || |||||||| | Sbjct 895771 TAGACAGCCATACTCATTTTAATTAAAGGATGAGATTCATAATTCTCAAGAATAATATTC 895712 Query 96958 TTTGCTTTAAAATCATCAATAG-ATGCAATCTTTCTGG--CAAACTTTAGTGTTGGGAAA 97014 | | ||||||||||||| | || || | ||| |||| | | |||||| || Sbjct 895711 TCCGAAGTAAAATCATCAATTGTATTTAAATTATCTCCAACAAATCTAATTGTTGGAAAT 895652 Query 97015 GGCCTGGGAGTTCGCGTAAGCTGCTCTGTGAGAGCATCAATGTGATTCACATAAATGTGA 97074 || ||| ||| || | || | | | ||||||||| | || || |||||| ||| Sbjct 895651 GGGTAGGGTTCTCGAGTCAATTGTTGTTTCAGAGCATCAGTATGGTTTTTATAAATATGA 895592 Query 97075 GCATCTCCTAAAGTGTGAATAAATTCTCCAGGAACTAAATCAGTGACATGGGCGATCATA 97134 ||||| || | |||||||| ||| || |||| || || | | || |||||| Sbjct 895591 GCATCGCCAATAGTGTGAACAAAATCACCAGTTGTTATTCCACAAATTTTTGCAATCATA 895532 Query 97135 CAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCCCATATCA--GCTG 97192 ||| || || || || |||||||||||| || || || | || | |||| |||| Sbjct 895531 TGAGTCAAAAGTGAGTACGAAGCAATGTTAAATGGAACTCCCAAACCAACATCACCGCTG 895472 Query 97193 ATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAAAACTGACTCAATACAT 97252 | |||||| || ||||| | || ||||| |||||||| ||| | | || Sbjct 895471 --CGTTGATACAAGTGACAACTTAACTCCCCATCTTGAACATAAAATTGAACTAGTGTAT 895414 Query 97253 GACAGGGGGGCAACGCCATTTTTGGAACATCTAAGACATTCCAAGCACACATCAACATTC 97312 |||| || ||||| |||||| || ||| | |||||||||| | | | |||| Sbjct 895413 GACATGGAGGCAAAACCATTTCACCAAGATCAGATGGATTCCAAGCAGATAAGATAATTC 895354 Query 97313 TTCTATCGGTTGGGTTTGTGTGTAT--GGT-ATTAATTATCTGCTTTAATTGATCAACGC 97369 |||| | ||||| | | ||| ||| | ||| || |||| | ||||||||| | Sbjct 895353 TTCTTGAAGAAGGGTTGTTCTTTATTTGGTCAATAAC-ATTTGCT--AGTTGATCAACTC 895297 Query 97370 CTTCTCCACCATAATTGTGCTTAAGACCTTGATATTCTGCTCCAAAATGCCTCCATTGGA 97429 ||| ||| || | | || || | ||||| || |||||||| |||||||||| Sbjct 895296 CTTTTCCTGTGTAGTCAGCATCAACTCCCTCATATTTAGCACCAAAATGTCTCCATTGGA 895237 Query 97430 ATCCATAAACAGGTCCAAGGTCTCCTTCTTCTCTATCACAGAAACCAAGCTTATCTAAAT 97489 | |||||||||||||| | || |||||| ||| ||| || || || |||| | | Sbjct 895236 ACCCATAAACAGGTCCCAAATCACCTTCTGGTCTTTCAGTAAATCCTAGACTATCAAGAA 895177 Query 97490 AGGACCTAGATCCATTTGCATCCCAAATGTGCACACCAGATGCTGCAAGCTCTTTGCTGT 97549 | ||| |||||||||||||||||| | ||||| || | ||||| | Sbjct 895176 ACTGTCTACTTCCATTTGCATCCCAAATCTTAACACCTCGGGCATTTAATTCTTTTGCAT 895117 Query 97550 CAGTAGATCCTCTGATAAACCACAACAATTCTTCCACAACACCTCTCCAAAATACTCTCT 97609 ||| ||| ||||||||||| | |||||| |||| |||| ||||||| | | | Sbjct 895116 TAGTGCTTCCCGAAATAAACCACAAAAGTTCTTCAACAATACCTTTCCAAAACGTTTTTT 895057 Query 97610 TAGTTGTTA 97618 ||||||||| Sbjct 895056 TAGTTGTTA 895048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346764123099710