Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20papillosus_20[genbank_20GCA_5F000936265.1_202014-11- 13] 4,703 sequences; 60,447,969 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq5 205 1e-47 seq4 147 3e-30 seq3059 136 6e-27 seq4548 114 2e-20 seq1 107 3e-18 seq38 84.2 3e-11 >seq5 Length=897882 Score = 205 bits (226), Expect = 1e-47 Identities = 428/632 (68%), Gaps = 12/632 (2%) Strand=Plus/Minus Query 205329 TAATT-TTGGAAATGGGTTTGGTGTACGTTCTAATTGtttttttAATCCATTAATATGAT 205387 ||||| |||||||||||| ||| || ||||||| ||| | ||| | |||| | Sbjct 895665 TAATTGTTGGAAATGGGTAGGGTTCTCGAGTCAATTGTTGTTTCAGAGCATCAGTATGGT 895606 Query 205388 TAACATATATATGTGCATTACCAATATTATGAATAAATTCATATGGTTTTAAATTAGTTA 205447 | ||| ||||| |||| |||||| | |||| ||| ||| | | ||| || | Sbjct 895605 TTTTATAAATATGAGCATCGCCAATAGTGTGAACAAAATCACCAGTTGTTA--TTCCACA 895548 Query 205448 AATGT--GCAATCATATAAGTCAATAAACTATAACTAGCAACATTAAATGGTACACCTAA 205505 ||| | |||||||||| |||||| | || ||||| |||||||| || || || Sbjct 895547 AATTTTTGCAATCATATGAGTCAAAAGTGAGTACGAAGCAATGTTAAATGGAACTCCCAA 895488 Query 205506 ACCCATATCA--GCTGATCTTTGATACATTTGACATGTAAGATATTTATTATTAATTACA 205563 ||| | |||| |||| | |||||||| ||||| | | | || | || || Sbjct 895487 ACCAACATCACCGCTG--CGTTGATACAAGTGACAACTTAACTCCCCATCTTGAA---CA 895433 Query 205564 TGAAATTGTACAAAACAATGACAAGGTGGTATAACCATATTTTCAACATCTATAGGATTC 205623 | |||||| || | |||||| || || | |||||| | ||| ||| |||||| Sbjct 895432 TAAAATTGAACTAGTGTATGACATGGAGGCAAAACCATTTCACCAAGATCAGATGGATTC 895373 Query 205624 CAGGCTGTTAATATTATATTTCTAGATTCAGGtttattttttattttatttatAATATGT 205683 || || | ||| || || |||| || ||| || || ||||||| | |||| || | Sbjct 895372 CAAGCAGATAAGATAATTCTTCTTGAAGAAGGGTTGTTCTTTATTTGGTCAATAACATTT 895313 Query 205684 GTTAATTGATCAAATCCTTGATTTGTATAATTTGTATCCATATCAATATATTTAGCACCA 205743 | || |||||||| ||||| ||| || | | ||| | | ||||||||||||| Sbjct 895312 GCTAGTTGATCAACTCCTTTTCCTGTGTAGTCAGCATCAACTCCCTCATATTTAGCACCA 895253 Query 205744 AAATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCTTCTTTTCTATCATTAAAA 205803 ||||| | |||||| || |||||||| || || |||||||||||| ||| ||| |||| Sbjct 895252 AAATGTCTCCATTGGAACCCATAAACAGGTCCCAAATCACCTTCTGGTCTTTCAGTAAAT 895193 Query 205804 CCACGtttttttatatattttaatgatccattttcatcccaaatatggattcctttattt 205863 || | | | | | | | | ||||||| |||||||||| | | ||| Sbjct 895192 CCTAGACTATCAAGAAACTGTCTACTTCCATTTGCATCCCAAATCTTAACACCTCGGGCA 895133 Query 205864 tttaGAATATTTGTATTAGTTGATCCAGATATAAACCATAATAATTCTTCAACAATTCCT 205923 |||| |||| |||||| ||| || |||||||| || | |||||||||||| ||| Sbjct 895132 TTTAATTCTTTTGCATTAGTGCTTCCCGAAATAAACCACAAAAGTTCTTCAACAATACCT 895073 Query 205924 CTCCAAAACATTGATTTTGTTGTAAATAATGG 205955 |||||||| || ||| ||||| | ||| || Sbjct 895072 TTCCAAAACGTTTTTTTAGTTGTTATTAAGGG 895041 Score = 89.7 bits (98), Expect = 8e-13 Identities = 106/141 (75%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || |||| || |||| || ||||| |||||| | ||| |||| || Sbjct 723798 ATGCAAATTTTCGTAAAAACTTTAACTGGAAAAACAATAACTCTTGAGGTTGAGGCCTCC 723857 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| || |||| |||| || || || || || ||||||||||| ||||| || || Sbjct 723858 GATACTGTTGATAATGTTAAGACT-AAGATCCATGAAAAAGAAGGTATTCCACCAGACCA 723916 Query 124658 ACAAAGGCTTATTTTTGCAGG 124678 ||| ||||||||||||| || Sbjct 723917 GCAACGGCTTATTTTTGCCGG 723937 >seq4 Length=926804 Score = 147 bits (162), Expect = 3e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 124536 ACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCA 124595 || |||||||| ||| | ||||| | ||||||||||| || ||| | ||| | || | Sbjct 390499 ACCATGCAAATTTTTGTTAAGACTTTGACAGGCAAAACCATCACTCTTGAGGTAGAGCCT 390558 Query 124596 AATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGAT 124655 |||||||||| ||| | ||| || ||||||||||||||||| || ||||| ||| Sbjct 390559 TCTGATACAATTGACAATGTCAAATCTAAGATTCAAGATAAAGAAGGAATCCCACCAGAT 390618 Query 124656 CAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTAT 124715 |||||||| | |||||||| ||||||||| | || ||| | |||| | ||||| Sbjct 390619 CAACAAAGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACTCTCTCTGATTAC 390678 Query 124716 AATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 || || ||||| || ||||| | ||||||||| | ||| | || || ||| Sbjct 390679 AACATCCAAAAGGAGTCAACCCTTCATTTGGTTCTTCGTCTTCGTGGAGGT 390729 >seq3059 Length=2231 Score = 136 bits (150), Expect = 6e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | ||||| |||| || || || || ||| | ||| | ||| | | Sbjct 974 ATGCAGATCTTCGTCAAGACTTTAACTGGAAAGACCATTACTCTTGAGGTAGAACCTTCT 1033 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || |||| | || |||||||||||| || ||||| || ||||| || ||| Sbjct 1034 GACACCATCGATAATGTCAAGTCGAAAATTCAAGACAAGGAAGGGATCCCACCAGACCAA 1093 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| | |||||||| ||||||||| | || ||| | |||| | ||||||||| Sbjct 1094 CAAAGATTGATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACTCTTTCCGATTATAAT 1153 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||| || |||||| | ||||||||| | ||| | || || ||||| Sbjct 1154 ATTCAAAAGGAGTCAACTCTTCATTTGGTTCTTCGTCTCCGTGGAGGTAT 1203 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||||||| | ||||| | || || |||||||| ||| | ||| | ||| | | Sbjct 290 ATGCAAATATTTGTCAAGACCTTGACTGGAAAAACTATTACTCTCGAGGTAGAACCTTCT 349 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | ||| || ||||||||||| || || || ||||| |||||| Sbjct 350 GACACCATTGACAATGTCAAATCCAAGATTCAAGATAAGGAGGGGATCCCACCAGATCAA 409 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| | || ||||| ||||| ||| | || ||| | |||| | || || || Sbjct 410 CAAAGATTAATCTTTGCTGGAAAGCAACTTGAAGATGGAAGAACTCTCTCTGACTACAAC 469 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || ||||| ||||| | |||||||| | ||| | || || ||||| Sbjct 470 ATCCAGAAAGAGTCAACCCTTCATTTGGTCCTCCGTCTCCGTGGAGGTAT 519 Score = 113 bits (124), Expect = 7e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| | || || |||||||| ||| | ||| | ||| | | Sbjct 518 ATGCAGATCTTTGTTAAGACCTTGACTGGAAAAACTATTACTCTCGAGGTAGAACCTTCT 577 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| || |||| || || || ||||| ||||||||||| ||||| || || Sbjct 578 GACACCATTGACAACGTTAAGTCA-AAGATCCAAGACAAAGAAGGTATTCCACCAGACCA 636 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||||| | |||||||| |||||||| | |||||| | |||| | || || || Sbjct 637 ACAAAGATTGATTTTTGCTGGAAAACAGCTTGAGGATGGAAGAACTCTTTCTGACTACAA 696 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || ||||| ||||| | |||||||| | ||| | || || ||||| Sbjct 697 CATCCAGAAAGAGTCAACCCTTCATTTGGTCCTCCGTCTCCGTGGAGGTAT 747 Score = 113 bits (124), Expect = 7e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| | || || |||||||| ||| | ||| | ||| | | Sbjct 746 ATGCAGATCTTTGTTAAGACCTTGACTGGAAAAACTATTACTCTCGAGGTAGAACCTTCT 805 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| || |||| || || || ||||| ||||||||||| ||||| || || Sbjct 806 GACACCATTGACAACGTTAAGTCA-AAGATCCAAGACAAAGAAGGTATTCCACCAGACCA 864 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||||| | || ||||| |||||||| | |||||| | |||| | || || || Sbjct 865 ACAAAGATTAATCTTTGCTGGAAAACAGCTTGAGGATGGAAGAACTCTTTCTGACTACAA 924 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||| || ||||| | ||||| ||| | ||| | || || ||||| Sbjct 925 CATTCAAAAGGAGTCAACCCTTCATTTAGTTCTCCGTCTCCGTGGAGGTAT 975 Score = 109 bits (120), Expect = 8e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | || || | || || ||||| || ||| | || | ||| | Sbjct 1202 ATGCAGATTTTCGTCAAAACTTTGACTGGAAAAACCATTACTCTTGAAGTAGAACCTTCC 1261 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | ||| || ||||||||||| || || || ||||| |||||| Sbjct 1262 GACACTATTGACAATGTCAAATCCAAGATTCAAGATAAGGAGGGGATCCCACCAGATCAA 1321 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| | |||||||| ||||||||| | || ||| | |||| | ||||| || Sbjct 1322 CAAAGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACTCTCTCTGATTACAAC 1381 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||| || |||||| | ||||||||| | ||| | || || ||||| Sbjct 1382 ATCCAAAAGGAGTCAACTCTTCATTTGGTTCTTCGTCTCCGTGGAGGTAT 1431 Score = 100 bits (110), Expect = 4e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | || || | || || ||||| || ||| | || | ||| | Sbjct 1430 ATGCAGATTTTCGTCAAAACTTTGACTGGAAAAACCATTACTCTTGAAGTAGAACCTTCC 1489 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | ||| || ||||||||||| || || || ||||| || ||| Sbjct 1490 GACACTATTGACAATGTCAAATCCAAGATTCAAGATAAGGAGGGGATCCCACCAGACCAA 1549 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| | |||||||| |||||||| | |||||| | |||| | ||||| || Sbjct 1550 CAAAGATTGATTTTTGCTGGAAAACAGCTTGAGGATGGAAGAACTCTCTCTGATTACAAC 1609 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 || ||||| || |||||| | ||||||||| | ||| | || || ||| Sbjct 1610 ATCCAAAAGGAGTCAACTCTTCATTTGGTTCTTCGTCTTCGTGGAGGT 1657 >seq4548 Length=666 Score = 114 bits (126), Expect = 2e-20 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| | || || |||||||| ||| | ||| | ||| | | Sbjct 457 ATGCAGATCTTTGTTAAGACCTTGACTGGAAAAACTATTACTCTCGAGGTAGAACCTTCT 516 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| || |||| || || || ||||| ||||||||||| ||||| || || Sbjct 517 GACACCATTGACAACGTTAAGTCA-AAGATCCAAGACAAAGAAGGTATTCCACCAGACCA 575 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||||| | |||||||| |||||||| | |||||| | |||| | ||||| || Sbjct 576 ACAAAGATTGATTTTTGCTGGAAAACAGCTTGAGGATGGAAGAACTCTCTCTGATTACAA 635 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGT 124747 || ||||| || |||||| | |||||||| Sbjct 636 CATCCAAAAGGAGTCAACTCTTCATTTGGT 665 >seq1 Length=1686976 Score = 107 bits (118), Expect = 3e-18 Identities = 375/577 (65%), Gaps = 20/577 (3%) Strand=Plus/Plus Query 202789 ACTCATATATCTAATTTTACCAAATATTGGTCTTTCTTTCCATGCTCTATC-ATGAATAC 202847 ||||||| ||||||||| || | ||| |||||| || || || || ||| || Sbjct 154438 ACTCATAGGTCTAATTTTCCCTACTATATTTCTTTCCTTAAATCCTTGGTCCATGGC-AC 154496 Query 202848 CACAAATTGACCACATACATCCAACATATCCATTTGGATCACGTCCATCTATAAAATATT 202907 ||||||| ||||||| || |||||| ||||||||| ||||| || |||||| Sbjct 154497 CACAAATACACCACATTATAGCAGTATATCCGTTTGGATCATTACCATCAATGGAATATT 154556 Query 202908 TATCATTTAAATNNNNNNNNNNNNNNAATGCTTCTTCTGG-TGATTTTGTCCATTCTAAT 202966 |||||||||| | ||||| ||||| || | || | |||| | || Sbjct 154557 TATCATTTAATTCAATGGTAATTTTCAATGCATCTTCGGGATCATCCT-TCCACTTTAGC 154615 Query 202967 AtttttttAGCCCAATACATTCTTAAATATCCATGCATTTTACCATAGATAATCATTTGT 203026 | || ||| ||||| |||||||| | || ||||| ||||| || | | | | | | Sbjct 154616 AATTGTTTTGCCCAGTACATTCTGACGTAACCATGAATTTTTCCTTTTGTCAATAGCTCT 154675 Query 203027 TTTTGTGATGCATTCCATAAATTG-TCATGAGTTAATGCATTTTC-AAGT--TGATATAA 203082 ||||| | |||||||| || | | || | ||| || ||| || | | | || | Sbjct 154676 TTTTGAGCAGCATTCCA-AAGTGGATCTTTTGTTTTGCCAGCTTCTAAATCCTCAGATGA 154734 Query 203083 ACTATATATATGTTTTCTAGTATCATTTTTATGTTCATTTAGTGTTTTTATTGCCCAATT 203142 ||||| | | ||| ||||||| ||||||| | || |||| | |||||||| Sbjct 154735 ---ATATACTTCATCTCTTTTATCATTCTTATGTTTAAGTAAAGTTTCTTTTGCCCAAGG 154791 Query 203143 ATTAGCACCATTTATATTATCGTAATTTTCATTATAATAACAAAAATTATCACATAGTTC 203202 |||||||| || |||||||||||||| | || ||| || ||| || | || Sbjct 154792 TAAAGCACCATCTAAATTATCGTAATTTTTCTCATGATAGCAGTAATGTTCTGCAATCTC 154851 Query 203203 TTTACGA-ATAATAGCTTCTTCACAAAAAACTTCTACCGATTTAGGATATAATTTTTTAT 203261 ||| | | |||| |||| |||| | | | || || ||||||| Sbjct 154852 TTTCCAAGCGAATA----TTTCATTTAAAAATGATGATAAGTTTACATCGTTTTTTTTAA 154907 Query 203262 A---TTTGTTAATTTCTAATATTATTCTTTGAGTTGAAATTTGACCAAAATGTATCCATG 203318 | ||| | ||||||||| |||||| |||||||| |||| ||||| | Sbjct 154908 ACCGTTTACAAGCCATGAATATTATTTTTTGAGAACTTATTTGACCTGAATGAATCCAAG 154967 Query 203319 GTGATAAATTACTTATTGCATTAGCATTTGGATCATT 203355 |||| ||||||||| |||||| ||||||| | ||| Sbjct 154968 GTGACAAATTACTTTGTGCATTTACATTTGGGTTATT 155004 >seq38 Length=203164 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| || | ||||| || || || || ||||| ||| | || | || || Sbjct 170839 AATGCAAATTTTCGTTAAGACTCTTACTGGTAAGACTATCACTCTTGAAGTCGAGCCATC 170898 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| || ||| ||||| ||||| ||||| |||||||| || ||||| || || Sbjct 170899 AGATACCATCGAAAATGTAAAAGCCAAAATCCAAGACAAAGAAGGAATCCCACCAGACCA 170958 Query 124658 ACAAAGGCTTATTTTTGCAGG 124678 |||| | ||||||||||| || Sbjct 170959 ACAACGTCTTATTTTTGCCGG 170979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755411588630400