Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20papillosus_20[genbank_20GCA_5F000936265.1_202014-11- 13] 4,703 sequences; 60,447,969 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq4548 89.7 4e-13 seq3059 86.0 5e-12 >seq4548 Length=666 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || |||||||| || |||||||| || | ||| | ||||||| Sbjct 437 ACCAAGTGAAGGGTTGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTTCTTCCATCCTCG 378 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || |||||||||||| | || | | || || || || || || ||||| |||||| Sbjct 377 AGTTGTTTTCCAGCGAAAATCAATCTTTGTTGGTCTGGTGGGATTCCCTCTTTGTCTTGG 318 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || ||| ||||| | || | |||||| | ||| ||||| | || | ||||| Sbjct 317 ATCTTTGACTTAACGTTATCAATGGTGTCAGAAGGCTCTACCTCAAGAGTGATAGTTTTT 258 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||| || || ||||| || ||||| Sbjct 257 CCAGTCAAGGTCTTAACAAAGATTTGCAT 229 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 ||||| || | || ||||| ||||| ||||||||||| | ||| | |||||| Sbjct 665 ACCAAATGAAGAGTTGACTCCTTTTGGATGTTGTAATCAGAGAGAGTTCTTCCATCCTCA 606 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 |||||||||||||| | || | | || || || || || || || || |||||| Sbjct 605 AGCTGTTTTCCAGCAAAAATCAATCTTTGTTGGTCTGGTGGAATACCTTCTTTGTCTTGG 546 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || ||| ||||| | || | |||||| | || ||||||| || | ||||| Sbjct 545 ATCTTTGACTTAACGTTGTCAATGGTGTCAGAAGGTTCTACCTCGAGAGTAATAGTTTTT 486 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||| || || ||||| |||||||| Sbjct 485 CCAGTCAAGGTCTTAACAAAGATCTGCAT 457 >seq3059 Length=2231 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| |||||||||||||| || | ||| | |||||| |||||||||||| Sbjct 942 GTTGACTCCTTTTGAATGTTGTAGTCAGAAAGAGTTCTTCCATCCTCAAGCTGTTTTCCA 883 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| | | || || || || || || || || |||||| || ||| ||| Sbjct 882 GCAAAGATTAATCTTTGTTGGTCTGGTGGAATACCTTCTTTGTCTTGGATCTTTGACTTA 823 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | |||||| | || ||||||| || | ||||| || |||| || Sbjct 822 ACGTTGTCAATGGTGTCAGAAGGTTCTACCTCGAGAGTAATAGTTTTTCCAGTCAAGGTC 763 Query 118722 TTTACAAAAATCTGCAT 118738 || ||||| |||||||| Sbjct 762 TTAACAAAGATCTGCAT 746 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 ||||| || | || ||||| ||||| ||||||||||| | ||| | |||||| Sbjct 1638 ACCAAATGAAGAGTTGACTCCTTTTGGATGTTGTAATCAGAGAGAGTTCTTCCATCCTCA 1579 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 |||||||||||||| | || | | || || || || || || |||||||| ||| | Sbjct 1578 AGCTGTTTTCCAGCAAAAATCAATCTTTGTTGGTCTGGTGGGATCCCCTCCTTATCTTGA 1519 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || ||| || | || | ||||| | || || || | || | ||||| Sbjct 1518 ATCTTGGATTTGACATTGTCAATAGTGTCGGAAGGTTCTACTTCAAGAGTAATGGTTTTT 1459 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||| |||||| || ||||||||||| Sbjct 1458 CCAGTCAAAGTTTTGACGAAAATCTGCAT 1430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433805533790476