Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20papillosus_20[genbank_20GCA_5F000936265.1_202014-11- 13] 4,703 sequences; 60,447,969 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq4548 114 2e-20 seq3059 114 2e-20 seq4 111 2e-19 seq1 100 4e-16 >seq4548 Length=666 Score = 114 bits (126), Expect = 2e-20 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 146069 ACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATC 146127 ||||| || | ||| ||||| ||| || || || || || ||||||||||| | ||| || Sbjct 209 ACCAAGTGGAGAGTTGATTCCTTTTGA-ATGTTGTAGTCAGAAAGAGTTCTTCCATCCTC 151 Query 146128 TAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 | |||||||||||| |||||||||||||| || || || |||||||||||||| ||||| Sbjct 150 GAGTTGTTTTCCAGCGAAAATCAATCTTTGTTGGTCTGGTGGAATTCCTTCTTTGTCTTG 91 Query 146188 NNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTTTT 146247 ||||| ||| ||| ||||| || ||||| || || Sbjct 90 AATCTTTGACTTGACGTTATCAATGGTATCAGAAGGTTCCACTTCAAGAGTGATGGTCTT 31 Query 146248 ACCTGTTAATGTTTTAATGAATATTTGCAT 146277 || ||||| ||||||| || || ||||| Sbjct 30 TCCAGTTAAAGTTTTAACAAAGATCTGCAT 1 Score = 102 bits (112), Expect = 1e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 |||||||| | ||| || || || || || ||||| || |||||||| | ||| || Sbjct 665 ACCAAATGAAGAGTTGACTCCTTTTGGATGTTGTAATCAGAGAGAGTTCTTCCATCCTCA 606 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 | |||||||||||||||||||||||||| || || || ||||| |||||||| ||||| Sbjct 605 AGCTGTTTTCCAGCAAAAATCAATCTTTGTTGGTCTGGTGGAATACCTTCTTTGTCTTG 547 Score = 93.3 bits (102), Expect = 6e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 ||||| || | || || ||||| || || || || ||||||||||| | ||| || Sbjct 437 ACCAAGTGAAGGGTTGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTTCTTCCATCCTCG 378 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 | |||||||||||| |||||||||||||| || || || || ||||| ||||| ||||| Sbjct 377 AGTTGTTTTCCAGCGAAAATCAATCTTTGTTGGTCTGGTGGGATTCCCTCTTTGTCTTG 319 >seq3059 Length=2231 Score = 114 bits (126), Expect = 2e-20 Identities = 99/120 (83%), Gaps = 2/120 (2%) Strand=Plus/Minus Query 146069 ACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATC 146127 |||||||| | ||| || || ||| || ||||||||||| ||||||||||| | ||| || Sbjct 1182 ACCAAATGAAGAGTTGACTCCTTTTGA-ATATTATAATCGGAAAGAGTTCTTCCATCTTC 1124 Query 146128 TAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 | ||||||||||||||||||||||||||| || || || || || ||||| || ||||| Sbjct 1123 AAGTTGTTTTCCAGCAAAAATCAATCTTTGTTGGTCTGGTGGGATCCCTTCCTTGTCTTG 1064 Score = 102 bits (112), Expect = 1e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 |||||||| | || || || || || || ||||| || |||||||| | ||| || Sbjct 270 ACCAAATGAAGGGTTGACTCCTTTTGGATGTTGTAATCAGAGAGAGTTCTTCCATCTTCA 211 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 | |||||||||||||||||| |||||||| || || || |||||||||||||| ||||| Sbjct 210 AGTTGTTTTCCAGCAAAAATTAATCTTTGTTGGTCTGGTGGAATTCCTTCTTTGTCTTG 152 Score = 102 bits (112), Expect = 1e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 |||||||| | || || ||||| || || || || ||||||||||| | ||| || Sbjct 726 ACCAAATGAAGGGTTGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTTCTTCCATCCTCA 667 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 | |||||||||||||||||||||||||| || || || ||||| |||||||| ||||| Sbjct 666 AGCTGTTTTCCAGCAAAAATCAATCTTTGTTGGTCTGGTGGAATACCTTCTTTGTCTTG 608 Score = 102 bits (112), Expect = 1e-16 Identities = 143/209 (68%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 |||||||| | ||| || || || || || ||||| || |||||||| | ||| || Sbjct 1410 ACCAAATGAAGAGTTGACTCCTTTTGGATGTTGTAATCAGAGAGAGTTCTTCCATCTTCA 1351 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTGN 146188 | |||||||||||||||||| |||||||| ||||| || || || || || |||||||| Sbjct 1350 AGTTGTTTTCCAGCAAAAATTAATCTTTGTTGATCTGGTGGGATCCCCTCCTTATCTTGA 1291 Query 146189 NNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTTTTA 146248 ||| || ||| ||||||||| || || || ||||| Sbjct 1290 ATCTTGGATTTGACATTGTCAATAGTGTCGGAAGGTTCTACTTCAAGAGTAATGGTTTTT 1231 Query 146249 CCTGTTAATGTTTTAATGAATATTTGCAT 146277 || || || ||||| | ||| || ||||| Sbjct 1230 CCAGTCAAAGTTTTGACGAAAATCTGCAT 1202 Score = 96.9 bits (106), Expect = 5e-15 Identities = 142/209 (68%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 |||||||| | ||| || || || || || ||||| || |||||||| | ||| || Sbjct 1638 ACCAAATGAAGAGTTGACTCCTTTTGGATGTTGTAATCAGAGAGAGTTCTTCCATCCTCA 1579 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTGN 146188 | |||||||||||||||||||||||||| || || || || || || || |||||||| Sbjct 1578 AGCTGTTTTCCAGCAAAAATCAATCTTTGTTGGTCTGGTGGGATCCCCTCCTTATCTTGA 1519 Query 146189 NNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTTTTA 146248 ||| || ||| ||||||||| || || || ||||| Sbjct 1518 ATCTTGGATTTGACATTGTCAATAGTGTCGGAAGGTTCTACTTCAAGAGTAATGGTTTTT 1459 Query 146249 CCTGTTAATGTTTTAATGAATATTTGCAT 146277 || || || ||||| | ||| || ||||| Sbjct 1458 CCAGTCAAAGTTTTGACGAAAATCTGCAT 1430 Score = 87.8 bits (96), Expect = 3e-12 Identities = 93/120 (78%), Gaps = 2/120 (2%) Strand=Plus/Minus Query 146069 ACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATC 146127 || ||||| | || || || ||| || || || || || ||||||||||| | ||| || Sbjct 954 ACTAAATGAAGGGTTGACTCCTTTTGA-ATGTTGTAGTCAGAAAGAGTTCTTCCATCCTC 896 Query 146128 TAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 | |||||||||||||| || |||||||| || || || ||||| |||||||| ||||| Sbjct 895 AAGCTGTTTTCCAGCAAAGATTAATCTTTGTTGGTCTGGTGGAATACCTTCTTTGTCTTG 836 Score = 84.2 bits (92), Expect = 3e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 |||||||| | || || ||||| || || || || || |||||||| | ||| || Sbjct 498 ACCAAATGAAGGGTTGACTCTTTCTGGATGTTGTAGTCAGAGAGAGTTCTTCCATCTTCA 439 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 | ||| ||||||||||| || |||||||| ||||| || || || || || |||||||| Sbjct 438 AGTTGCTTTCCAGCAAAGATTAATCTTTGTTGATCTGGTGGGATCCCCTCCTTATCTTG 380 >seq4 Length=926804 Score = 111 bits (122), Expect = 2e-19 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 |||||||| | || || || || || || ||||| || |||||||| | ||| || Sbjct 390710 ACCAAATGAAGGGTTGACTCCTTTTGGATGTTGTAATCAGAGAGAGTTCTTCCATCTTCA 390651 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTGN 146188 | |||||||||||||||||| |||||||| ||||| || || ||||||||||||||||| Sbjct 390650 AGTTGTTTTCCAGCAAAAATTAATCTTTGTTGATCTGGTGGGATTCCTTCTTTATCTTGA 390591 Query 146189 NNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTTTTA 146248 ||||| ||| ||||| || || ||||| ||||| Sbjct 390590 ATCTTAGATTTGACATTGTCAATTGTATCAGAAGGCTCTACCTCAAGAGTGATGGTTTTG 390531 Query 146249 CCTGTTAATGTTTTAATGAATATTTGCAT 146277 ||||| || || |||| || |||||||| Sbjct 390530 CCTGTCAAAGTCTTAACAAAAATTTGCAT 390502 >seq1 Length=1686976 Score = 100 bits (110), Expect = 4e-16 Identities = 234/344 (68%), Gaps = 7/344 (2%) Strand=Plus/Minus Query 27933 TTGGGCAATATTAACTTTAGAAATACATAAAACTGATAAAAGAAATAAAATAT-TTAGTT 27991 |||||||| | ||||||| | |||||| | |||||||||| || || ||| || | Sbjct 154789 TTGGGCAAAAGAAACTTTACTTAAACATAAGAATGATAAAAGAGATGAAGTATATTCATC 154730 Query 27992 TACGAGAATTAGAGTATGGCAAAACAGATAATAAACTTTGGAATTATTGTCAATATTATT 28051 | | || ||||| |||||||||| | || |||||||||| | |||| | | Sbjct 154729 TGAG-GATTTAGAAGCTGGCAAAACAAAAGATCCACTTTGGAATGCTGCTCAAAAAGAGC 154671 Query 28052 TATTAAAATTTGGTTATCTTAATGGATATATGAGAATGTTTTGGGCaaaaaaaTTAATTG 28111 |||| | | || | || |||| || | ||||||| ||||||||| |||| | Sbjct 154670 TATTGACAAAAGGAAAAATTCATGGTTACGTCAGAATGTACTGGGCAAAACAATTGCTAA 154611 Query 28112 AATGGACTAATTCTCCTCAAGATGCCATCGATAAA-ACAATTTATCTTAATGATAAATAT 28170 | |||| || ||| ||||||| || || || || ||| | | |||||||||||| Sbjct 154610 AGTGGAAGGATGATCCCGAAGATGC-ATTGAAAATTACCATTGAATTAAATGATAAATAT 154552 Query 28171 TTTTTCGATGGATATGATCCTATGGGATATGTTAATATATTATGGTCAATAGGAGGATTG 28230 | | ||||| ||||||| | |||||| | |||| | |||| || | || | Sbjct 154551 TCCATTGATGGTAATGATCCAAACGGATATACTGCTATAATGTGGTGTATTTGTGG-TGC 154493 Query 28231 CAT-GACAGAGCATTCAAAGAAAGAGAAAT-GTATGGAAAAATA 28272 ||| ||| || ||| || |||||| | || ||| |||||| || Sbjct 154492 CATGGACCAAGGATTTAAGGAAAGAAATATAGTAGGGAAAATTA 154449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743482689941760