Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20papillosus_20[genbank_20GCA_5F000936265.1_202014-11- 13] 4,703 sequences; 60,447,969 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq21 196 4e-45 >seq21 Length=323752 Score = 196 bits (216), Expect = 4e-45 Identities = 523/793 (66%), Gaps = 5/793 (1%) Strand=Plus/Plus Query 15872 AATAATAATTAACTTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGAC 15931 ||||| ||| ||| ||| |||||| |||| | ||| ||| || | | | ||| Sbjct 30184 AATAAAAAT-AACATTAGAAATCAGCGTCTAATGTAAAAACACGTTCCTCCTCTGTGGAC 30242 Query 15932 ATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCT 15991 || || | ||| || |||||| ||| |||| ||||||||||| ||||| ||||| Sbjct 30243 ATTACACCGAATTTCTGGTATTCAGATACTTTCTTCTCAAAGAAATTGGTTTTGCCTTCA 30302 Query 15992 AATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCC 16051 | ||| | ||| ||||||||||||| || || || | | ||| || | || Sbjct 30303 ATTGAGAGATTAACCATAAAATCAAATGGGTTCTTAGTATTATAAAGCTTTTGACAATTA 30362 Query 16052 AATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTC 16111 | ||| | ||||| ||| || ||| | || ||||| | ||||||| | | ||| Sbjct 30363 AGTTCTACCAATAGATGATCGGCAACATACTCGATATAATCACACATTAAACCTGAATTC 30422 Query 16112 ATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCT 16171 ||||| || | | |||||| | || || || | | | | ||||| ||| |||| || Sbjct 30423 ATTCCGATCATATCAACAGGAAGAGCATCAGTAAGATATTCCTTTTCAATACTAACGGCA 30482 Query 16172 TCAATGATTATATCTCTTACTACACTATTTA-ACGGAGGGTTTAATAAGTGTTTAAACAT 16230 || | ||||| || ||| ||| | || | | || ||| |||| | |||| Sbjct 30483 TCTCTAATTATTTCCTTTA-TACGTTCTTCAGATGGCTTGTTCTCCAAGTAACTGTACAT 30541 Query 16231 TATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGT 16290 | ||| |||||||||| || || || || || | || ||||| || ||| ||| Sbjct 30542 AAGACATGCAAAATCACGGTGTAACCCCTCATCTCGGGAAATCAACTCATTCGAATGTGT 30601 Query 16291 AAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAA 16350 | || ||||| | || ||||| |||| ||| ||||| || |||||||||||||| || Sbjct 30602 TAACCCGGGCATCAAGCCACGTTTCTTAAGCCAGAATATGGCAGCAAATGAACCAGAGAA 30661 Query 16351 GAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttact 16410 |||||| |||||||| || ||||| |||| | || || || | || ||||| Sbjct 30662 GAATATTCCTTCAACAGCTGCAAAAGCAATTACACGTTCTCCAAAAGTAGCGTTTTTGTC 30721 Query 16411 ttctatccattttttagcccaatttgcttt-ttgtttAACACAGTTCATGTTCTCTATTG 16469 | |||||| || |||||||| ||||| || | | | || || | || | | Sbjct 30722 GGCAATCCATCTTAGAGCCCAATCAGCTTTCTTTCTGATGAAAGGAAAT-TCATCCAAAG 30780 Query 16470 CATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTAT 16529 | || || | | |||| | || | ||| ||| || || || || ||| | Sbjct 30781 CGTTGAAGAGTTTATTTCTCTCATCCTGATCACGAATGTAGGTTTCAATAAGTTTCGAGT 30840 Query 16530 ACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGG 16589 |||| || ||||||||| ||||| || || ||||||||||| || | | || |||| Sbjct 30841 ACATCTCACTATGAATATTTTCCATGGCAATTTGAAAACCATAGAAAAAGCGTGCCTCGG 30900 Query 16590 ATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAG 16649 | || ||||| |||| ||||| |||| || |||||||| || ||||| | Sbjct 30901 GGACCTGGACTTCCTTTGAAAATCTTTCAACTAAATTCTCGTTAACGATACCATCCGATG 30960 Query 16650 CTGCAAAAAACGC 16662 | ||||| || || Sbjct 30961 CAGCAAAGAAGGC 30973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462484810075800