Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20papillosus_20[genbank_20GCA_5F000936265.1_202014-11- 13] 4,703 sequences; 60,447,969 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq5 181 8e-41 >seq5 Length=897882 Score = 181 bits (200), Expect = 8e-41 Identities = 412/620 (66%), Gaps = 0/620 (0%) Strand=Plus/Plus Query 20047 CCCTTATTAACTACGAAACGGGTATTTTGGAAAGGCGTTGTTGAAGAGTTATTATGGTTT 20106 |||||| |||| || ||| ||||||||||| |||||||||| | || |||||| Sbjct 895041 CCCTTAATAACAACTAAAAAAACGTTTTGGAAAGGTATTGTTGAAGAACTTTTGTGGTTT 895100 Query 20107 ATTAAAGGATCAACAAATTCTACCGAGCTTGTAGAAAAAGGAGTTAAGATTTGGAGCGCA 20166 ||| ||| || ||| | | || | | ||| |||||||||||| ||| Sbjct 895101 ATTTCGGGAAGCACTAATGCAAAAGAATTAAATGCCCGAGGTGTTAAGATTTGGGATGCA 895160 Query 20167 CATGGATCTAAGCAATTTTTACACAGCAATGGATTTGACAACCGTCAAGAGGGGGATTTG 20226 ||||| || || ||| | | || |||||| | | | ||| || |||||| Sbjct 895161 AATGGAAGTAGACAGTTTCTTGATAGTCTAGGATTTACTGAAAGACCAGAAGGTGATTTG 895220 Query 20227 GGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTTGACATGAACACA 20286 || ||||| ||||| || ||||||||||||||||| ||| |||||| | | | | Sbjct 895221 GGACCTGTTTATGGGTTCCAATGGAGACATTTTGGTGCTAAATATGAGGGAGTTGATGCT 895280 Query 20287 AATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATTTAATTAAAACGAAC 20346 | || ||| ||||||| |||||| || |||||||||| | ||| || | ||| Sbjct 895281 GACTACACAGGAAAAGGAGTTGATCAACTAGCAAATGTTATTGACCAAATAAAGAACAAC 895340 Query 20347 CCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATGTGCCTTTAATGGCT 20406 || ||||||||||| |||| || ||||| | ||| | | ||||| | Sbjct 895341 CCTTCTTCAAGAAGAATTATCTTATCTGCTTGGAATCCATCTGATCTTGGTGAAATGGTT 895400 Query 20407 TTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAATAATGAATTGTCGTGTCAA 20466 |||||||||||||||| ||| |||||||| ||| || || || ||||| Sbjct 895401 TTGCCTCCATGTCATACACTAGTTCAATTTTATGTTCAAGATGGGGAGTTAAGTTGTCAC 895460 Query 20467 ATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCG 20526 |||||||||| || |||| | || |||| ||||| || || ||||| || | Sbjct 895461 TTGTATCAACGCAGCGGTGATGTTGGTTTGGGAGTTCCATTTAACATTGCTTCGTACTCA 895520 Query 20527 CTGCTTACGTATATGATTGCACATGTTACAGATTTAAAAACGGGTGACTTAGTCCACACC 20586 || | || ||||||||||| | || | ||| ||| ||||| || || ||||| Sbjct 895521 CTTTTGACTCATATGATTGCAAAAATTTGTGGAATAACAACTGGTGATTTTGTTCACACT 895580 Query 20587 ATAGGAGACGCGCATATTTACCTTAATCATATAGAACCTTTAAAATTACAGTTAACACGA 20646 || || || || |||||||| || |||| || || | ||| ||| || || ||| Sbjct 895581 ATTGGCGATGCTCATATTTATAAAAACCATACTGATGCTCTGAAACAACAATTGACTCGA 895640 Query 20647 CAACCAAAACAATTCCCAAC 20666 |||| | | ||| ||||| Sbjct 895641 GAACCCTACCCATTTCCAAC 895660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399161119646335