Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20papillosus_20[genbank_20GCA_5F000936265.1_202014-11- 13] 4,703 sequences; 60,447,969 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq21 255 6e-63 >seq21 Length=323752 Score = 255 bits (282), Expect = 6e-63 Identities = 548/811 (68%), Gaps = 16/811 (2%) Strand=Plus/Plus Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13915 || |||||| | ||||| | ||||||| || || | | || || || || | ||| Sbjct 30198 TAGAAATCAGCGTCTAATGTAAAAACACGTTCCTCCTCTGTGGACATTACACCGAATTTC 30257 Query 13916 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13975 || |||||| ||| | || |||||||| || ||||| ||||| | ||| | ||| || Sbjct 30258 TGGTATTCAGATACTTTCTTCTCAAAGAAATTGGTTTTGCCTTCAATTGAGAGATTAACC 30317 Query 13976 ATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAAT 14035 |||||||||||||| || | | || | | || | |||| ||||||| | || Sbjct 30318 ATAAAATCAAATGGGTTCTTAGTATTATAAAGCTTTTGACAATTAAGTTCTACCAATAGA 30377 Query 14036 CTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTT 14095 ||| |||| |||| ||||| | | |||||||| | ||||||| || || | | Sbjct 30378 TGATCGGCAACATACTCGATATAATCACACATTAAACCTGAATTCATTCCGATCATATCA 30437 Query 14096 ACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATC 14155 ||||||| || || | | |||| ||||| ||| || || || | || || | Sbjct 30438 ACAGGAAGAGCATCAGTAAGATATTCCTTTTCAATACTAACGGCATCTCTAATTATTTCC 30497 Query 14156 GTAATAATTTCATTAGAAGGAGGATATTTTAGATGTT--TAAAAATTAAACACGCAAAAT 14213 | ||| ||| | ||| || | || | | || | | || | ||| ||||||| Sbjct 30498 TTTATACGTTCTTCAGATGGCT--TGTTCTCCAAGTAACTGTACATAAGACATGCAAAAT 30555 Query 14214 CACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCA 14273 ||| || | |||||||||| ||| | || || ||| |||||| || ||||||| Sbjct 30556 CACGGTGTAACCCCTCATCTCGGGAAATCAACTCATTCGAATGTGTTAACCCGGGCATCA 30615 Query 14274 ATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAA 14333 | || ||||| || | ||| ||||| ||||| ||||| || || ||||||||||| |||| Sbjct 30616 AGCCACGTTTCTTAAGCCAGAATATGGCAGCAAATGAACCAGAGAAGAATATTCCTTCAA 30675 Query 14334 CTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTC 14393 | || ||||| || |||| ||||||||||| | || ||||||| | |||||| || Sbjct 30676 CAGCTGCAAAAGCAATTACACGTTCTCCAAAAGTAGCGTTTTTGTCGGCAATCCATCTTA 30735 Query 14394 TAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATGTT 14453 |||||| |||| ||| ||| | || ||| | | || | ||| || || | ||| Sbjct 30736 GAGCCCAATCAGCTTTCTTTCTGATGAAAGGAAATTCATCCAAAGCGTTGAAGA---GTT 30792 Query 14454 CCTTCTCTTTAGTACT--TGA--AATGTATGTATCAATAAGTAAGCTATACATTTCAGAG 14509 || ||| | | || | | |||||| || ||||||||| ||||| ||| Sbjct 30793 TATT-TCTCTCATCCTGATCACGAATGTAGGTTTCAATAAGTTTCGAGTACATCTCACTA 30851 Query 14510 TGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTC--TGACCATTGTA 14567 || || |||||||| || || ||||||||||| ||| | | || || |||| || | Sbjct 30852 TGAATATTTTCCATGGCAATTTGAAAACCATAGAAAAAGCGTGCCTCGGGGACC--TGGA 30909 Query 14568 CCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAA 14627 | || |||||||||| | ||||| || ||||| |||||||| || ||||| | Sbjct 30910 CTTCCTTTGAAAATCTTTCAACTAAATTCTCGTTAACGATACCATCCGATGCAGCAAAGA 30969 Query 14628 ATGCCAATATGTTTTTAATAAAGTATTGCTC 14658 | || || | || |||||||| |||| Sbjct 30970 AGGCTAACACTCTTGAGATAAAGTAGCGCTC 31000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482317244108040