Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20papillosus_20[genbank_20GCA_5F000936265.1_202014-11- 13] 4,703 sequences; 60,447,969 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq21 208 7e-49 seq1 120 3e-22 seq3059 98.7 9e-16 seq4 86.0 6e-12 >seq21 Length=323752 Score = 208 bits (230), Expect = 7e-49 Identities = 535/811 (66%), Gaps = 8/811 (1%) Strand=Plus/Minus Query 57621 GTAGACCTGTCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGAATCTGAGAGAAATTTT 57680 || |||||| |||||| ||| || ||||| || | ||| ||| | | ||| Sbjct 31048 GTTGACCTGGGAAAGGATATGAAAGACTGGGAATCGATGTCAGATGGGGAGCGCTACTTT 30989 Query 57681 AT-TAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGT 57739 || | || | ||||| || || || || ||||| |||||||| |||||||||||||| || Sbjct 30988 ATCTCAAGA-GTGTTAGCCTTCTTTGCTGCATCGGATGGTATCGTTAACGAGAATTTAGT 30930 Query 57740 CGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGT 57799 |||||||||||| | ||||| || || | ||||| | | || || || |||||| | Sbjct 30929 TGAAAGATTTTCAAAGGAAGTCCAGGTCCCCGAGGCACGCTTTTTCTATGGTTTTCAAAT 30870 Query 57800 GGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA 57859 ||||| ||||| | ||| || ||||| ||| ||| || || || ||| | || Sbjct 30869 TGCCATGGAAAATATTCATAGTGAGATGTACTCGAAACTTATTGAAACCTACATTCGTGA 30810 Query 57860 CAACGACGAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAA 57919 | || |||| | || ||| |||||||| | || | | || ||| ||||| Sbjct 30809 TCAGGATGAGAGAAATAAACTCTTCAACGCTTTGGATGAATTTCCTTTCATCAGAAAGAA 30750 Query 57920 GGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAAT 57979 || || ||| | | | |||||| | | || || || | || | |||| Sbjct 30749 AGCTGATTGGGCTCTAAGATGGATTGCCGACAAAAACGCTACTTTTGGAGAACGTGTAAT 30690 Query 57980 CGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGAT 58039 || || || || || ||||| |||||||| || || ||||| || ||||| ||| | Sbjct 30689 TGCTTTTGCAGCTGTTGAAGGAATATTCTTCTCTGGTTCATTTGCTGCCATATTCTGGCT 30630 Query 58040 GAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGA 58099 |||||||| ||| |||||||||| | || | || |||||||| || || || || Sbjct 30629 TAAGAAACGTGGCTTGATGCCCGGGTTAACACATTCGAATGAGTTGATTTCCCGAGATGA 30570 Query 58100 GGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGACGCG 58159 ||| | || ||||||||| || || |||||| | || | | || || || | Sbjct 30569 GGGGTTACACCGTGATTTTGCATGTCTTATGTACAGTTACTTGGAGAACAAGCCATCTGA 30510 Query 58160 GGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGA 58219 || || || ||| || || | || || || || ||||| || | | | || || Sbjct 30509 AGAACGTATAAAGGAAATAATTAGAGATGCCGTTAGTATTGAAAAGGAATATCTTACTGA 30450 Query 58220 AGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTT 58279 || || || || | ||| |||| ||||| | ||| |||| | || || |||| Sbjct 30449 TGCTCTTCCTGTTGATATGATCGGAATGAATTCAGGTTTAATGTGTGATTATATCGAGTA 30390 Query 58280 TGTTGCCGACAGACTTTTGCTCGAACTGATTGGAGAGCGTCATTACAACACGAAAAATCC 58339 ||||||||| || ||| | ||||| | | | | | ||| || || || || || Sbjct 30389 TGTTGCCGATCATCTATTGGTAGAACTTAATTGTCAAAAGCTTTATAATACTAAGAACCC 30330 Query 58340 GTTTGATTTTATG---AATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGaaaaaaa 58396 |||||||||||| |||| |||| | || ||||| || || || || || || || Sbjct 30329 ATTTGATTTTATGGTTAATC---TCTCAATTGAAGGCAAAACCAATTTCTTTGAGAAGAA 30273 Query 58397 aGTTAGCGAATATCAAAAATACGGCGTGATG 58427 ||| ||||| || |||| ||| || ||| Sbjct 30272 AGTATCTGAATACCAGAAATTCGGTGTAATG 30242 >seq1 Length=1686976 Score = 120 bits (132), Expect = 3e-22 Identities = 325/495 (66%), Gaps = 2/495 (0%) Strand=Plus/Plus Query 23072 ACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTT 23131 |||||||| | ||| ||||| ||| ||||| || || ||||| || || ||||| Sbjct 915574 ACAATTTCAGCACAAAGATTTGAACATTTTATTGTTCCTAAATTTTGTTGATTACTTTTA 915633 Query 23132 CGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATG 23191 || || || ||||||||| ||||| || || | |||||||| | ||| || || Sbjct 915634 CGGTTACAATGATCCTTGTAAAGCATATATGGAATACCCGTCTCTATCTGAGATTCACAA 915693 Query 23192 ATCGCTCGCCACATAG-TCTGAGCGTGAACACGTCGCACGTACCTGCCTTCTTCCTCGTA 23250 ||| |||| ||| |||| || | || || | || | ||| | || || Sbjct 915694 ATCTTCTGCCAAATATATCTG-GCTTTTACTTGTTTCCTATAACGATTTTCATTTTCATA 915752 Query 23251 CTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCAT 23310 | | ||| | ||||| || |||| |||| || | || || || ||| | Sbjct 915753 TTGTACGTAAAGTTTATCAAAATCATCACCAAAACAATCATCAAGACCCGGACATTCATT 915812 Query 23311 CGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTAT 23370 |||||||| | ||| ||| || ||||||| ||| ||||||| | ||| || | Sbjct 915813 AGGACACATTAACGACCAATGTGAATCGCTTTCAACACGTTTCATAAATAAATCTGGAAC 915872 Query 23371 CCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAA 23430 ||| || |||| || | ||||| || | | || ||| || ||||||||||| || Sbjct 915873 CCAAAGTCCGTAAAATAAATCGCGTGCTCTTTCTTCTTCTGGTCCTGTGTTCTTTTTTAA 915932 Query 23431 ATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGG 23490 || | ||| | | | || |||||||| || || | || | ||||| || || || Sbjct 915933 CTCAAGAAATTGGATAATATCTGCATGCCATGGTTCCAAATATATAGCAAATGCACCAGG 915992 Query 23491 TCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGG 23550 ||| |||||||| || ||||| || ||||| | || | ||||| || | || ||| || Sbjct 915993 TCTTTTATTGCCACCTTGATCAACATAACGAACAGTACTATTGTAAACACGTAACATTGG 916052 Query 23551 CACGAGACCGTTGGA 23565 || | ||| || || Sbjct 916053 AACCAAACCATTTGA 916067 >seq3059 Length=2231 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| |||||| | || || || || || || | || || ||||| || Sbjct 974 ATGCAGATCTTCGTCAAGACTTTAACTGGAAAGACCATTACTCTTGAGGTAGAACCTTCT 1033 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| || ||| ||||||||||| | || || ||||| Sbjct 1034 GACACCATCGATAATGTCAAGTCGAAAATTCAAGACAAGGAAGGGATCCCACCAGACCAA 1093 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | | || || ||||| ||||| | ||||| | ||| | ||||||||| Sbjct 1094 CAAAGATTGATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACTCTTTCCGATTATAAT 1153 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||||||| || || ||||||||| |||| ||| | || | || |||| Sbjct 1154 ATTCAAAAGGAGTCAACTCTTCATTTGGTTCTTCGTCTCCGTGGAGGTA 1202 >seq4 Length=926804 Score = 86.0 bits (94), Expect = 6e-12 Identities = 149/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 || |||||||||||| || |||||| ||||||||||||| ||||| | || || || || Sbjct 390498 AACCATGCAAATTTTTGTTAAGACTTTGACAGGCAAAACCATCACTCTTGAGGTAGAGCC 390557 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 || || | | || | |||||| | || || || ||||| | || || || Sbjct 390558 TTCTGATACAATTGACAATGTCAAATCTAAGATTCAAGATAAAGAAGGAATCCCACCAGA 390617 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 || || | |||| || ||||| ||||| | ||||| | ||| | ||||| Sbjct 390618 TCAACAAAGATTAATTTTTGCTGGAAAACAACTTGAAGATGGAAGAACTCTCTCTGATTA 390677 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 ||||| ||||| || || || |||||| |||| ||| Sbjct 390678 CAACATCCAAAAGGAGTCAACCCTTCATTTGGTTCTT 390714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445740194507760