Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20papillosus_20[genbank_20GCA_5F000936265.1_202014-11- 13] 4,703 sequences; 60,447,969 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq5 163 6e-35 >seq5 Length=897882 Score = 163 bits (180), Expect = 6e-35 Identities = 387/573 (68%), Gaps = 14/573 (2%) Strand=Plus/Plus Query 35234 ACTACCAAGAAAATTTTCTGGAGAGGAGTTGTGGAAGAACTCTCGTGGTTCATCAGGGGC 35293 || || || |||| || |||| ||| |||| |||||||| | |||||| || ||| Sbjct 895050 ACAACTAAAAAAACGTTTTGGAAAGGTATTGTTGAAGAACTTTTGTGGTTTATTTCGGGA 895109 Query 35294 AATACAGACGCCAAAGAATTG---GCCAAGAAGAAGATACACATCTGGAACGCTAATGGG 35350 | || | || |||||||| ||| || | || | || ||| | || ||||| Sbjct 895110 AGCACTAATGCAAAAGAATTAAATGCCCG--AGGTGTTA-AGATTTGGGATGCAAATGGA 895166 Query 35351 TCGCGGGAATTTTTGGACAGTAGAGGGTTATAC-GATAGAGCAGAGGGAGATTTGGGACC 35409 | | ||| | || ||| ||| || ||| || ||| |||| || ||||||||||| Sbjct 895167 AGTAGACAGTTTCTTGATAGTCTAGGATT-TACTGAAAGACCAGAAGGTGATTTGGGACC 895225 Query 35410 CGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATATGATACCTGTTCTTCCGATTA 35469 || || || ||||||||| | |||||||||||| ||||||| | | | || || Sbjct 895226 TGTTTATGGGTTCCAATGGAGACATTTTGGTGCTAAATATGAGGGAGTTGATGCTGACTA 895285 Query 35470 TACTGGAAAGGGTATTGATCAATTGGCCAATATACTAAAGACCCTG-AGAGAA-AATCCA 35527 || ||||| || |||||||| | || ||| | || |||| | |||| || || Sbjct 895286 CACAGGAAAAGGAGTTGATCAACTAGCAAATGT--TATTGACCAAATAAAGAACAACCCT 895343 Query 35528 GATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCACCTTATGGCTCTT 35587 | ||||| || || | | || |||||||| |||||| |||| | | Sbjct 895344 TCTTCAAGAAGAATTATCTTATCTGCTTGGAATCCATCTGATCTTGGTGAAATGGTTTTG 895403 Query 35588 CCTCCATGCCACATGACT-GCTCAATTTTATGTGGCTAATGGAGAATTGTCGTGCCAGTT 35646 |||||||| || | ||| | |||||||||||| |||| || || || || || Sbjct 895404 CCTCCATGTCATAC-ACTAGTTCAATTTTATGTTCAAGATGGGGAGTTAAGTTGTCACTT 895462 Query 35647 GTATCAGCGAAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGCATCATACTCTCT 35706 |||||| || ||||| ||||| || ||||| || || || || ||||| || ||||| || Sbjct 895463 GTATCAACGCAGCGGTGATGTTGGTTTGGGAGTTCCATTTAACATTGCTTCGTACTCACT 895522 Query 35707 TCTGACTCATCTGATGGCCAGTATGGTGGGTCTAAAACCGGGAGAGTTTATCCTCACTCT 35766 | |||||||| |||| || | || || ||| | | || || ||| | | |||| | Sbjct 895523 TTTGACTCATATGATTGCAAAAATTTGTGGAATAACAACTGGTGATTTTGTTCACACTAT 895582 Query 35767 TGGTGACGCACACATTTATAATACCCACATTGA 35799 ||| || || || |||||||| | ||| | ||| Sbjct 895583 TGGCGATGCTCATATTTATAAAAACCATACTGA 895615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989524370451365