Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20papillosus_20[genbank_20GCA_5F000936265.1_202014-11- 13] 4,703 sequences; 60,447,969 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1 473 2e-128 seq64 224 1e-53 seq108 84.2 3e-11 >seq1 Length=1686976 Score = 473 bits (524), Expect = 2e-128 Identities = 1243/1872 (66%), Gaps = 65/1872 (3%) Strand=Plus/Plus Query 62066 TGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAA 62125 ||| ||||| || | || ||| |||||||| ||||| | ||| |||| || ||||| Sbjct 914631 TGCCGGTTTAGTTCTTAAATAATACATTCCTGTTTTCAAACCATTTTTCCAACCATAAAA 914690 Query 62126 ATGCAT---ACTCGTTAGTTTGGAATAACTCGGATCTGCT-ATATGGATATTCATAGATT 62181 |||||| ||| || | |||| | || ||| | | ||| | ||| | |||| Sbjct 914691 ATGCATTGAACTACATATTCC---ATAAGTTGG-TCTATTTACATGAAGATTAAGTGATT 914746 Query 62182 GACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGCAA 62241 || |||||| | |||| || | || ||||||| || || | ||||||| || Sbjct 914747 GAGATTGATCAACAAAGGGACCACGATCAATTGCCATTTCAATAATAGCTTTTTGTGGAA 914806 Query 62242 TTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGTT---TGTATTCTGAA 62298 ||||||||| ||||||||||| | | |||| | ||||| | | |||| |||| Sbjct 914807 TTTCCCAAACAGTTTTATAAAGTTCTCTGATATGTAATGGAATATCGCATATATTTTGAA 914866 Query 62299 TGGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGG 62358 | || ||| || | | || || ||| || || || ||||| | | | || Sbjct 914867 TAGACCCATTATTTTCAATTATTTGATTAAGAATTTCCTCGTTCCAAA---TACCAAGGG 914923 Query 62359 T---TAAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCTCC 62415 | |||| ||| |||||||| | || || | ||| || || ||||| || || | | Sbjct 914924 TAATTAAATCTCGTAGGAGATGAGTATTTACAATTTGAAAATCACCAGATAAAACCCGTC 914983 Query 62416 GAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAG 62475 || || | ||| || || ||||| | || |||||| | || | ||| |||| | Sbjct 914984 TTGTATATAAATTTGATGTGTATGGTTCAATAGATTCATTACTGCCAAGAATCTGAGATG 915043 Query 62476 TTGATGCAGTCGGCAT---AGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGA 62532 | || ||||| ||||| || | | | |||| || || | || || || | | Sbjct 915044 TAGAAGCAGTGGGCATTAAAGATACTAACAATGAATTA---CGAATGCCAAATTTAGAAA 915100 Query 62533 TTTTATCTTTTAGATGTTCCCAATTCCAAAGATCCGACGGTACAACANNNNNNNNNNNAT 62592 |||| || || | | || ||||||||| | || || |||| || Sbjct 915101 TTTTCTCCTTCAAACTTTTCCAATTCCATAAATTGCTTGGAGTAACACCCCACATGTCAT 915160 Query 62593 ATTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCATATGGTCCTTCCTTCT 62652 | || ||||| || ||| | ||||| || |||| ||||| | ||| | ||| Sbjct 915161 ACTGAAGAATTCCTTTAGATACAGGTGATCCATCAAATGTTTCATAGGATCCATGAATCT 915220 Query 62653 CAGCTAGTTTACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTAT 62712 |||| || ||| ||||| | |||||| | |||||| ||||||||||| ||||||| Sbjct 915221 TTGCTAATTCACAGGAAGCCTCAAGTGCACCATGATAAATAGTTTCAAAGATTTTCTTAT 915280 Query 62713 TTAGATCTTGTGCTTCCGG-GCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCT 62771 | |||||| ||||| || | | | ||||||||| || | ||| | ||| || || || Sbjct 915281 TGAGATCTCTAGCTTCTGGTGATGT-AAATGGATATTTCATGAGTAAAAATGCATCTGCA 915339 Query 62772 AATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGA 62831 | |||||| || ||||| || ||||| | |||| | |||| || | || || Sbjct 915340 AGTCCTTGTACTCCAATTCCAATAGGACGATGTTTAGTATTTGATAAACGTGCCTCCTCC 915399 Query 62832 ATAGGATAATAATTAATATCTATAATTTTATTGAGATT-TCTGACAATTACTTTGACCAC 62890 | ||||||| ||||||||| |||| || || | ||| | || ||| |||| ||| Sbjct 915400 AGTGGATAATGATTAATATCAATAACCTTGTTCAAATTCTTTGTCAAAATTTTTG-CCAT 915458 Query 62891 ATCCTTCAG---TTTGAGAAAATCAAATCGCCCAT----CTATT--------ACAAACAT 62935 | | || ||| ||||||||| | | || || ||||| | Sbjct 915459 GTTATGAAGACGTTT---AAAATCAAAAACACGTTTTTTCTCTTTAATCACGACAAAATT 915515 Query 62936 GTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTAT 62995 || | ||||| ||| ||| |||||| || || || ||||||| | | |||| | Sbjct 915516 ATTAAGTGCAATAGACCCCAAATTACAAACAGCAACTTCATTAGGGGAAGAAAATTGAAC 915575 Query 62996 TATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTT 63055 || |||| |||||||| ||| || || ||||||||||||||||||||||| || Sbjct 915576 AATTTCAGCACAAAGATTTGAACATTTTATTGTTCCTAAATTTTGTTGATTACTTTTACG 915635 Query 63056 GTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAAT 63115 |||||| |||||| ||||| || ||||| |||| || || ||||||||||| ||| Sbjct 915636 GTTACAATGATCCTTGTAAAGCATATATGGAATACCCGTCTCTATCTGAGATTCACAAAT 915695 Query 63116 CGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTATAG 63175 | | ||| | || || |||| | | || ||| | || || || ||| Sbjct 915696 CTTCTGCCAAATATATCTGGCTTTTACTT--GTTTCCTATAACGATTTTCATTTTCATAT 915753 Query 63176 AGTA--TACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCC 63233 ||| || | | || || || || || || || || | | |||||||||| Sbjct 915754 TGTACGTAAAGTTTATCAAAATCATCACCAAAACAATCATCAAGACCCGGACATTCATTA 915813 Query 63234 GGACACATCAACGACCACTCTCCGTCATCCTTCA-CTCGTTTCATAAAGAGATCAGGAAT 63292 |||||||| |||||||| | | || | |||| | ||||||||||| | ||| |||| Sbjct 915814 GGACACATTAACGACCAATGTGAATCG-CTTTCAACACGTTTCATAAATAAATCTGGAAC 915872 Query 63293 CCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAG 63352 |||||| | ||||| ||| | || ||| | ||| || |||||| |||||||| | Sbjct 915873 CCAAAGTCCGTAAAATAAATCGCGTGCTCTTTCTTCTTCTGGTCCTGTGTTCTTTTTTAA 915932 Query 63353 ATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGG 63412 || || || |||||||| | |||||| |||||||| ||||| || | | ||||| Sbjct 915933 CTCAAGAAATTGGATAATATCTGCATGCCATGGTTCCAAATATATAGCAAATGCACCAGG 915992 Query 63413 CCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG 63472 | ||| || || || ||||| | || | | | || |||| ||||| | |||||||| Sbjct 915993 TCTTTTATTGCCACCTTGATCAACATAACGAACAGTACTATTGTAAACACGTAACATTGG 916052 Query 63473 AATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATT 63532 || | ||| ||||| ||||| || || || ||| | ||| ||||||| || | Sbjct 916053 AACCAAACCATTTGAAGATCCATTAGTTCCAGAAATAAATGATCCTGTGGCACGGATTGT 916112 Query 63533 ACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGT 63592 ||| || || |||| ||||| ||| | || || || | || ||||| ||||| || Sbjct 916113 ACTGATACTTAATCCTACCCCCCCAGCCGTCTTTGAAATAACAGCACATCGCTTTAAAGT 916172 Query 63593 GTCATAGATGCCTTCTATGCTATCATCGATCAT-GTTAAGTAGAAAACAGCTAGACATTT 63651 ||||||||| ||||| || |||||| |||| ||||| | ||| ||| | | | | Sbjct 916173 GTCATAGATTCCTTCAATAGAATCATCACTCATCGTTAA-CAAAAAGCAGGAACAAAGCT 916231 Query 63652 GGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAG 63711 | | || || || ||||||||||| || ||||| | || |||| | || | Sbjct 916232 GAGGTCGTAGGGTACCAGCATTAAATAACGTTGGAGATCCATGGATAAAAAGTCGTTTTG 916291 Query 63712 AAAGTAGAT-TGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCG 63770 | | || || |||| |||| |||||| || | ||||| |||||| || | || Sbjct 916292 ACA-TATATCTGTATGTCTGAATAGCAGATGCAATATCTTCACCATGAATACCAATGGCA 916350 Query 63771 ACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAG 63830 |||||||| | ||| || |||||||||||||||||||| || ||||||||||| || || Sbjct 916351 ACACGCATAAGCATATGTTGAGGTCTTTCAACAATTTTATTATTTATTTTCAATAAATAT 916410 Query 63831 GATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA---TGAAAAGTCTCGTTCGTAAA-- 63885 ||| ||| || || ||||| ||||| || |||| || ||| |||| || |||| Sbjct 916411 GATCGTTCTAATGTCTTAAATCCAAAGTA--TGTAAAGTGGAAA-TCTCTTT--TAAATC 916465 Query 63886 TAATAACCGAAT 63897 ||||||| |||| Sbjct 916466 TAATAACTGAAT 916477 >seq64 Length=153875 Score = 224 bits (248), Expect = 1e-53 Identities = 450/658 (68%), Gaps = 28/658 (4%) Strand=Plus/Minus Query 62592 TATTGTAGAATACCGTTA----CTGGCGTACGATCCTACATATGTATCATATGGTCCTTC 62647 ||||| ||||| || ||| |||||| ||||| |||| || ||||| ||||| || Sbjct 123210 TATTGAAGAATTCCCTTAGATACTGGCG----ATCCTTCATAAGTTTCATAAGGTCCATC 123155 Query 62648 CTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTT 62707 ||||| | || ||| ||||| || ||||| | ||||| ||||| || |||| Sbjct 123154 ACGTTCAGCCAATTCACATGAAGCCTCCAAGGCACCATGGTAAATTGTTTCGAAAATCTG 123095 Query 62708 CTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTC 62767 ||||| || |||| |||| || ||||||||| | | ||| || || || || Sbjct 123094 TTTATTAAGTTCTTTAGCTTGAGGTGAGGTAAATGGATATCTCATGAGCATGAATGCATC 123035 Query 62768 CGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTC-AGCTT 62826 || || ||||||||||||||||| || || | |||||| ||||||| ||| | ||||| Sbjct 123034 TGCCAAACCTTGAACACCAATACCTATTGGACGGTGTCTCATATTAGA-ATTCCTAGCTT 122976 Query 62827 CTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGA 62886 |||||| || |||||||| | ||| ||||| ||||| | ||| ||| | | ||| Sbjct 122975 CTGGAACTGGGTAATAATTCACATCGATAATCTTATTTAAATTCCTGGTCAAAATTTTAG 122916 Query 62887 CCACATCCTTCAGTTTGAG-AAAAT------CAAATCGCCCA---TCTAT---TACAAAC 62933 | |||| | || ||||| ||||| || | |||| ||||| ||||| Sbjct 122915 CAACATAGTGGAG-TTGAGTAAAATTGAAAACAGGTTTCCCATTTTCTATATCAACAAAT 122857 Query 62934 ATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGT 62993 | || | |||| ||| | |||||||| || || || |||| | ||||| Sbjct 122856 CTATTGAGAGCAATAGACCCTAGATTACATACAGCAACTTCATCTGGTGAACAATATTCA 122797 Query 62994 ATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTT 63053 | ||||| || || |||||| ||||||||||||||| | ||||||||||||||| || Sbjct 122796 ACGATCTCGGTACAGAGATTAGAACACTTGATAGTTCCAAGATTTTGTTGATTACTTTTC 122737 Query 63054 TTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATA 63113 ||||| ||| ||||||| ||| | || || ||||||||||||||| ||| | Sbjct 122736 CGATTACAATGATCTTTATAAACCATGTAAGGTGTGCCAGTTTCAATCTGACTTTCACAA 122677 Query 63114 ATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCTT--TCGT 63171 ||| || ||| | |||| || || || | | ||| | | | |||||| | || | Sbjct 122676 ATCTTTTGCCAAATAACTCTTGCTTTAAT--TTGCTTTCTGTAGCGTTTCTCCTCCTCAT 122619 Query 63172 ATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTC 63229 || | || ||| ||||| || || |||||| || || | | ||||||||| Sbjct 122618 ATTTGATGTATAATTTCTCGAATTCATCACCCCAACAATCCTCAAGCCCAGGACATTC 122561 Score = 96.9 bits (106), Expect = 4e-15 Identities = 233/344 (68%), Gaps = 9/344 (3%) Strand=Plus/Minus Query 62067 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 62126 || ||||| || | || |||||||| |||||||||| || | |||| |||| |||| Sbjct 123684 GCAGGTTTAGTTCTTAAGTAGTACATCCCCGTTTTTAATCCACGTTTCCAACCGTGAAAA 123625 Query 62127 TGCATACTCGTTAGTTTGGAATAACTCGGATCT-GCTATATGGATATTCATAGATTGACT 62185 |||||| | | | ||| || ||| || | ||| | || | ||||| Sbjct 123624 TGCATAGAACTACAAATTGCATATGATGG-TCTAGCCACATGAAGGTTAAGGGATTGTGA 123566 Query 62186 TTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTT-TGTGCAATTT 62244 |||||| ||||| || || | || |||||||| | || || ||||| || | |||| Sbjct 123565 TTGATCAATGAAAGCACCACGATCAGCAGCCATCTCAATAATA-TCTTTCTGGGAGATTT 123507 Query 62245 CCCAAATAGTTTTATAAA-CTCGCTTAATATCTTCTGGAA---GGTTTGTATTCTGAATG 62300 |||| | ||||||||||| ||| |||||||| | || | ||| |||| || || Sbjct 123506 CCCATACAGTTTTATAAAGCTC-TTTAATATCATTGGGTATTTCTTTTATATTTTGGATA 123448 Query 62301 GATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTT 62360 |||||| ||| | || || |||| | | || || ||||||| || || || Sbjct 123447 GATCCATTATCAGCTATTATTTCATTCATTAGTTCTTCGGTCCATAAGTTAAGTTCAATT 123388 Query 62361 AAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCCAGA 62404 ||| || |||| ||||| || || || | |||||| || ||||| Sbjct 123387 AAATCTTTAAGAAGATGTGGATTTACAATTTGGAAATCACCAGA 123344 >seq108 Length=97238 Score = 84.2 bits (92), Expect = 3e-11 Identities = 92/122 (75%), Gaps = 3/122 (2%) Strand=Plus/Plus Query 28699 ACCCAATTCCTTGACCTGAGTTAGTGATCTCCAATCCATGTTAGCGCTTCCTAAATAAAT 28758 ||||| ||| ||||| | ||| | |||| ||||||||||||| || || |||| || || Sbjct 87570 ACCCATTTCTTTGACTTCAGTCAATGATTTCCAATCCATGTTTGCACTACCTATGTAGAT 87629 Query 28759 ATGTGTATTATCAGATATCCAAAATTTTGTATGAAGAACTCCT---CCTAGGATATTTGT 28815 |||| | | ||| ||||||||||| ||||| | ||||||| || |||| | ||| Sbjct 87630 ATGTTTTTGGTCAACAATCCAAAATTTGGTATGTAAAACTCCTGAACCAAGGAGGTGTGT 87689 Query 28816 AA 28817 || Sbjct 87690 AA 87691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629780574597840