Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20papillosus_20[genbank_20GCA_5F000936265.1_202014-11- 13] 4,703 sequences; 60,447,969 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq1 462 2e-125 seq21 266 3e-66 seq64 188 7e-43 >seq1 Length=1686976 Score = 462 bits (512), Expect = 2e-125 Identities = 1216/1843 (66%), Gaps = 31/1843 (2%) Strand=Plus/Plus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 ||||| | ||||| | |||||||| ||||| ||| ||||| | |||||||||||| ||| Sbjct 914605 TCAACACTAAATTTCACAGGATTTGCTGCCGGTTTAGTTCTTAAATAATACATTCCTGTT 914664 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCAT---ACTGGTCAGTTTTGCGTATGTAGGA 36906 || | || | |||| || ||||||||||| ||| || | || | || || || Sbjct 914665 TTCAAACCATTTTTCCAACCATAAAAATGCATTGAACTA--CA-TATTCCATAAGTTGGT 914721 Query 36907 TTATCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCC 36966 ||| || || | | | ||||||| |||||| | ||| | ||| | || |||| Sbjct 914722 CTATTTACATGAAGATTAAGTGATTGAGATTGATCAACAAAGGGACCACGATCAATTGCC 914781 Query 36967 ATTTCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTA 37026 ||||| | |||| |||||| | || |||||||| |||||||| | || | | |||| Sbjct 914782 ATTTCAATAATAGCTTTTTGTGGAATTTCCCAAACAGTTTTATAAAGTTCTCTGATATGT 914841 Query 37027 TCTGGTAAATC---TAAATGTTGAATAGAACCATTATGTAACACAATTGTATTCTTTATG 37083 ||| | ||| || || ||||||||| ||||||| | | ||| ||| || Sbjct 914842 AATGGAATATCGCATATATTTTGAATAGACCCATTATTTTCAATTATTTGATTAAGAATT 914901 Query 37084 TCATTATTCCACATATTTCTACTTATTAGTTCTCTCAATAGGTGTGGATTTACAACCTGA 37143 || | ||||| ||| | |||| |||| | || || | |||||||| ||| Sbjct 914902 TCCTCGTTCCAAATACCAAGGGTAATTAAATCTCGTAGGAGATGAGTATTTACAATTTGA 914961 Query 37144 AAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCA 37203 ||||| |||||||| || | ||||||||||| ||| || ||||||||||| || ||| Sbjct 914962 AAATCACCAGATAAAACCCGTCTTGTATATAAATTTGATGTGTATGGTTCAATAGATTCA 915021 Query 37204 TTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTT 37263 ||| | | | || ||||||||||| ||||| |||||| | || || | ||| Sbjct 915022 TTACTGCCAAGAATCTGAGATGTAGAAGCAGTGGGCATTAAAGATACTAACAATGAATTA 915081 Query 37264 CTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGGG 37323 | | ||| | || |||| ||| || | ||||||| |||||||| |||| Sbjct 915082 CGAATGCCAAATTTAGAAATTTTCTCCTTCAAACTTTTCCAATTCCATAAATTGCTTGGA 915141 Query 37324 TTCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGTC 37383 | |||||| ||||| || ||||| |||||| | || || | | | |||| Sbjct 915142 GTAACACCCCACATGTCATACTGAAGAATTCCTTTAGATACAGGTGATCCATCAAATGTT 915201 Query 37384 TCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATATT 37443 ||||| | ||| | ||| || |||| ||| || || || ||||| ||| ||| || Sbjct 915202 TCATAGGATCCATGAATCTTTGCTAATTCACAGGAAGCCTCAAGTGCACCATGATAAATA 915261 Query 37444 GTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTC-GCTATCGAATGCATAGCCCAA 37502 ||||| || |||| |||| | | | |||||| | | | |||| ||| || Sbjct 915262 GTTTCAAAGATTTTCTTATTGAGATCTCTAGCTTCTGGTGATGTA-AATGGATATTTCAT 915320 Query 37503 TAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTATT 37562 | || ||| |||| || | || || || || || || || || | |||||| |||| Sbjct 915321 GAGTAAAAATGCATCTGCAAGTCCTTGTACTCCAATTCCAATAGGACGATGTTTAGTATT 915380 Query 37563 AGATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATTTTT 37622 ||| | | || || |||||||| ||| ||||| || | || || | ||| || Sbjct 915381 TGATAAACGTGCCTCCTCCAGTGGATAATGATTAATATCAATAACCTTGTTCAAATTCTT 915440 Query 37623 AACTAGTATTTTCGTAATTATTCTCAACTTGTCGAACAT---AAATACGTTATTA----T 37675 | ||||| | || || | || || || || ||| ||||| || | Sbjct 915441 TGTCAAAATTTTTGCCATG-TTATGAAGACGTTTAAAATCAAAAACACGTTTTTTCTCTT 915499 Query 37676 TAA------CAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCTT 37729 ||| |||| ||| | | | |||||| || | |||||| ||||||||||||| Sbjct 915500 TAATCACGACAAAATTATTAAGTGCAATAGACCCCAAATTACAAACAGCAACTTCATTAG 915559 Query 37730 CGTTACTAAATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGC 37789 | | |||||| | ||| || | ||| ||||| || | |||||||| ||||| Sbjct 915560 GGGAAGAAAATTGAACAATTTCAGCACAAAGATTTGAACATTTTATTGTTCCTAAATTTT 915619 Query 37790 TTTGATTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTA 37849 |||||| ||| |||||| ||| || || || ||||| || | || |||| Sbjct 915620 GTTGATTACTTTTACGGTTACAATGATCCTTGTAAAGCATATATGGAATACCCGTCTCTA 915679 Query 37850 TTTGAGCCTCGATAATAGATTTCCATAAACTTCTTGCTTTAAC--GATCGCTTTAAtttt 37907 | |||| || ||| | ||| | | ||| ||||| || | | || ||| | Sbjct 915680 TCTGAGATTCACAAATCTTCTGCCAAATATATCTGGCTTTTACTTGTTTCCTATAACGAT 915739 Query 37908 tttCTTTGTTTCGTATTCTATATATAATTTGTTAAAATCATTCCCCCATACA-TCGCATA 37966 |||| || ||| |||| || || | ||| | |||||||| | || | ||| || | Sbjct 915740 TTTCATT--TTCATATTGTACGTAAAGTTTATCAAAATCAT-CACCAAAACAATCATCAA 915796 Query 37967 ATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCA 38026 || |||||||| |||||||||| ||||| | | ||| |||| || |||| || Sbjct 915797 GACCCGGACATTCATTAGGACACATTAACGACCAATGTGAATCGCTTTCAACACGTTTCA 915856 Query 38027 TAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCC 38086 |||||||||| || ||||| | | | ||||||||| | ||| | |||||| | Sbjct 915857 TAAATAAATCTGGAACCCAAAGTCCGTAAAATAAATCGCGTGCTCTTTCTTCTTCTGGTC 915916 Query 38087 CTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAA 38146 || |||||| |||| ||||| | || ||||| || ||||||||||| | ||| | Sbjct 915917 CTGTGTTCTTTTTTAACTCAAGAAATTGGATAATATCTGCATGCCATGGTTCCAAATATA 915976 Query 38147 TCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTAT 38206 | | | ||| || |||||||||| || || |||| || ||| | ||| || |||| | Sbjct 915977 TAGCAAATGCACCAGGTCTTTTATTGCCACCTTGATCAACATAACGAACAGTACTATTGT 916036 Query 38207 ATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTAC 38266 | | | |||||| || || | |||||| || || || | || || ||| | | | Sbjct 916037 AAACACGTAACATTGGAACCAAACCATTTGAAGATCCATTAGTTCCAGAAATAAATGATC 916096 Query 38267 CCTTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCATGTTTTGATATTAAAG 38326 | | || || || |||| || ||||||| || || || ||||| || | || Sbjct 916097 CTGTGGCACGGATTGTACTGATACTTAATCCTACCCCCCCAGCCGTCTTTGAAATAACAG 916156 Query 38327 CGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAA 38386 | ||| | ||||| || ||| | || ||||| ||| ||||| | || | || | || Sbjct 916157 CACATCGCTTTAAAGTGTCATAGATTCCTTCAATAGAATCATCACTCATCGTTAACAAAA 916216 Query 38387 AACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTA 38446 | || | | | ||||| | | || || || |||||||| || |||||| |||| | Sbjct 916217 AGCAGGAACAAAGCTGAGGTCGTAGGGTACCAGCATTAAATAACGTTGGAGATCCATGGA 916276 Query 38447 TGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGT 38506 | || | || |||| ||| | ||||| | || || | ||||| | || | Sbjct 916277 TAAAAAGTCGTTTTGACATATATCTGTATGTCTGAATAGCAGATGCAATATCTTCACCAT 916336 Query 38507 GAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTTATTATTCT 38566 ||||||| | | || | ||| ||||||||||| |||||||| | ||||||||||| Sbjct 916337 GAATACCAATGGCAACACGCATAAGCATATGTTGAGGTCTTTCAACAATTTTATTATTTA 916396 Query 38567 GTTTAAGTAGATACGATTTTTCTAATGTTTTTATTCCAAAATA 38609 ||| | || ||| ||| ||||||||| || | |||||| || Sbjct 916397 TTTTCAATAAATATGATCGTTCTAATGTCTTAAATCCAAAGTA 916439 >seq21 Length=323752 Score = 266 bits (294), Expect = 3e-66 Identities = 473/685 (69%), Gaps = 19/685 (3%) Strand=Plus/Plus Query 11363 TCGAAAAAATTAGTCTTACCTTCTAGTGATATATACTCCATAAAGCTAAAAGGATTATAT 11422 || || ||||| || || ||||| | ||| | || ||||||| ||| || || | Sbjct 30279 TCAAAGAAATTGGTTTTGCCTTCAATTGAGAGATTAACCATAAAATCAAATGGGTTCTTA 30338 Query 11423 ACATTGAAGACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTATA 11482 ||| | | |||| |||| | ||| |||| ||| || || | || ||| Sbjct 30339 GTATTATAAAGCTTTTGACAATTAAGTTCTACCAATAGATGATCGGCAACATACTCGATA 30398 Query 11483 TACTGAGACATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACTGTCAAA 11542 || | | ||||||||| ||||||| || || | ||| || |||| |||| | || | | Sbjct 30399 TAATCACACATTAAACCTGAATTCATTCCGATCATATCAACAGGAAGAGCATCAGTAAGA 30458 Query 11543 AACTCCTTTTCTATATTAACCGCATCAATGATTATCGACGTTATAACTTCCTTAGATGG- 11601 | |||||||| ||| |||| ||||| | ||||| | ||||| ||| | |||||| Sbjct 30459 TATTCCTTTTCAATACTAACGGCATCTCTAATTATTTCCTTTATACGTTCTTCAGATGGC 30518 Query 11602 TGGATGT---AATAAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTC 11658 | | | | | ||| ||| |||| | ||| |||||||||| ||||| || || || Sbjct 30519 TTGTTCTCCAAGTAACTGT----ACATAAGACATGCAAAATCACGGTGTAACCCCTCATC 30574 Query 11659 TCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCA 11718 || || | ||||| ||| |||||| ||||||||||| || ||||| || | ||| Sbjct 30575 TCGGGAAATCAACTCATTCGAATGTGTTAACCCGGGCATCAAGCCACGTTTCTTAAGCCA 30634 Query 11719 AAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTAC 11778 ||||| ||||||||||||||||| ||||||||||| || ||||||||||| || | ||| Sbjct 30635 GAATATGGCAGCAAATGAACCAGAGAAGAATATTCCTTCAACAGCTGCAAAAGCAATTAC 30694 Query 11779 TCTTTCTCCATA--TA-CCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTT 11835 | ||||||| | || | || ||| | |||||| || ||||||||||||||||| Sbjct 30695 ACGTTCTCCAAAAGTAGCGTTTTTGTCGGCAATCCATCTTAGAGCCCAATCAGCTTTCTT 30754 Query 11836 TTTTACGCATTCCATTGTTTCTATAGCGTTAAATAAATGCATTTTTTCTATATTATCTCT 11895 | | | | | | | || | |||||| || | || ||||| | | | Sbjct 30755 TCTGATGAAAGGAAATTCATCCAAAGCGTTGAAGA----GTTTATTTCTCTCATCCTGAT 30810 Query 11896 TACATATGTATCTATTAATAAACT----ATACATTTCTGAATGAATATTTTCCATAGCTA 11951 || ||||| | | ||||| | ||||| || ||||||||||||||| || | Sbjct 30811 CACGAATGTAGGTTTCAATAAGTTTCGAGTACATCTCACTATGAATATTTTCCATGGCAA 30870 Query 11952 TTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCG 12011 ||||||| ||||||||| | |||||||| | ||| || ||| |||||||||| Sbjct 30871 TTTGAAAACCATAGAAAAAGCGTGCCTCGGGGACCTGGACTTCCTTTGAAAATCTTTCAA 30930 Query 12012 CTAAATTCTCATTTACAATACCATC 12036 |||||||||| || || |||||||| Sbjct 30931 CTAAATTCTCGTTAACGATACCATC 30955 >seq64 Length=153875 Score = 188 bits (208), Expect = 7e-43 Identities = 454/682 (67%), Gaps = 24/682 (4%) Strand=Plus/Minus Query 37228 GATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTC 37287 || |||||||||||||| || | ||| | |||||||| |||||| || ||| | Sbjct 123324 GAGGCAGTAGGCATTGGAGCAAGTAGCAAAGAATTTCTCACACCATGTTTAGCAATATTT 123265 Query 37288 TTTTTTAGTTCATTCCAATCCCATAAATCTGTTGGGTT--CTTTAACCACATATCATATT 37345 ||| | | || ||| ||||||| || |||| | | || ||||||||| |||| Sbjct 123264 GCTTTCAATGTATCCCAGTCCCATAGATTGCTTGGCCTGACATT--CCACATATCGTATT 123207 Query 37346 GTAGAATACCTTTACTCGCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAG 37405 | ||||| || ||| |||| || | | ||| || ||||||||||| | | || || Sbjct 123206 GAAGAATTCCCTTAGATACTGGCGATCCTTCATAAGTTTCATAAGGTCCATCACGTTCAG 123147 Query 37406 CTAGTTCGCAACTAGATTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTTA 37465 | | ||| || || || | || ||| || |||||||||||||| ||| |||| | Sbjct 123146 CCAATTCACATGAAGCCTCCAAGGCACCATGGTAAATTGTTTCGAAAATCTGTTTATTAA 123087 Query 37466 ATATTTTTGCTT---CTTCGCTATCGAATGCATAGCCCAATAATATAAACACATCAGCCA 37522 | ||| |||| | | || |||| ||| | || | || || |||| |||| Sbjct 123086 GTTCTTTAGCTTGAGGTGAGGTA---AATGGATATCTCATGAGCATGAATGCATCTGCCA 123030 Query 37523 AACCCTGAACACCGATACCTATGGGTCTATGTTTCTTATTAGATCTAGACGATTCTATCA 37582 |||| |||||||| |||||||| || | ||| || ||||||| | | |||| | Sbjct 123029 AACCTTGAACACCAATACCTATTGGACGGTGTCTCATATTAGAATTCCTAGCTTCTGGAA 122970 Query 37583 CTGGATAATAATTGATATCTATTATTTTATTTAGATTTTTAACTAGTATTTTCGTAATTA 37642 |||| |||||||| | ||| || || ||||||| ||| | | ||||| | || | Sbjct 122969 CTGGGTAATAATTCACATCGATAATCTTATTTAAATTCCTGGTCAAAATTTTAGCAA-CA 122911 Query 37643 TTCTCAACTTGTCGAACAT---AAATACGTT----AT------TATTAACAAATTTACTC 37689 | | | ||| || || ||| | ||| || ||| ||||||| || | Sbjct 122910 TAGTGGAGTTGAGTAAAATTGAAAACAGGTTTCCCATTTTCTATATCAACAAATCTATTG 122851 Query 37690 AACGAAATAGATCCTAGATTACATACAGCAACTTCATCTTCGTTACTAAATTGTATAATC 37749 | | |||||| ||||||||||||||||||||||||||| || | ||| | ||| Sbjct 122850 AGAGCAATAGACCCTAGATTACATACAGCAACTTCATCTGGTGAACAATATTCAACGATC 122791 Query 37750 TCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTA 37809 || |||||||||||| | | || ||||| | ||| |||||| ||| |||| Sbjct 122790 TCGGTACAGAGATTAGAACACTTGATAGTTCCAAGATTTTGTTGATTACTTTTCCGATTA 122731 Query 37810 CAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGAT 37869 ||| ||||||||| | || || || || || ||| || ||| || ||| | Sbjct 122730 CAATGATCTTTATAAACCATGTAAGGTGTGCCAGTTTCAATCTGACTTTCACAAATCTTT 122671 Query 37870 TTCCATAAACTTCTTGCTTTAA 37891 | ||| | | ||||||||||| Sbjct 122670 TGCCAAATAACTCTTGCTTTAA 122649 Score = 107 bits (118), Expect = 2e-18 Identities = 239/356 (67%), Gaps = 2/356 (1%) Strand=Plus/Minus Query 38195 CTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGG 38254 |||| |||||| | | || ||||| || | | ||||| ||| | || ||| | || Sbjct 122537 CTGTATTATTAAAAACCCTCAACATTGGAATCAATCCATTTGATGTCCCATTTGTCCCAC 122478 Query 38255 ATATATAAGTACCCTTAGCTCGTATATTACTTATCGAC-AATCCTATTCCACCTGCATGT 38313 ||| | | ||| ||||||| ||| | | | | || || || ||||||||| | Sbjct 122477 CAATAAATGAACCATTAGCTCTAATAC-AGTGAACATTTAAGCCAATACCACCTGCAGAT 122419 Query 38314 TTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTT 38373 || || || ||||||||||| || | || || | || |||||||| ||| | Sbjct 122418 TTCGAGATCAAAGCGCATTGCTTAAGTGTGTCGTAAATCCCTTCTATTGAATCACCAGCC 122359 Query 38374 ATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTA 38433 |||| || || ||||| |||| ||||| |||||| ||||| ||||| || Sbjct 122358 ATTGTTAATAAGAAACATGAGGACAACTGAGGACGCCTAGTTCCCGCGTTGAATAAAGTT 122299 Query 38434 GGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCT 38493 ||||| ||||| ||||||| || | |||| ||||| || || || || ||| || Sbjct 122298 GGAGAAGCATGAGTGAACCACTTCTGAGACATATAATCGTAAGTCTCAATGACAGAATTA 122239 Query 38494 ATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTC 38549 ||||| | |||||||| || | || || | ||| | | |||||| ||||| || Sbjct 122238 ATATCTTCTCCGTGAATCCCAACAGCAACACGCATCAATAGATGTTGAGGTCTCTC 122183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468497256598320