Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20papillosus_20[genbank_20GCA_5F000936265.1_202014-11- 13] 4,703 sequences; 60,447,969 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq64 91.5 1e-13 seq3059 84.2 2e-11 >seq64 Length=153875 Score = 91.5 bits (100), Expect = 1e-13 Identities = 238/356 (67%), Gaps = 24/356 (7%) Strand=Plus/Minus Query 153450 AATGCATCGGCCAAACCTTGAATGCCAATGCCTATGGGACGATGGCGCATATTAGAtttt 153509 |||||||| ||||||||||||| ||||| ||||| ||||| || | ||||||||| || Sbjct 123042 AATGCATCTGCCAAACCTTGAACACCAATACCTATTGGACGGTGTCTCATATTAGAATTC 122983 Query 153510 tttGCAGCTTCAACAGGATAGAAATTGCGGTCGATAATTTTATTTAAA---CTAATCACG 153566 | || || ||| || || |||| |||||||| ||||||||| || ||| Sbjct 122982 CTAGCTTCTGGAACTGGGTAATAATTCACATCGATAATCTTATTTAAATTCCTGGTCA-- 122925 Query 153567 ACATGTTTCACCACAGAATGCAACAGTTG---AAAAT--CAAAC--GTT--CCATTAATG 153617 | || ||| | ||| | || ||||| ||||| |||| ||| ||||| Sbjct 122924 AAAT-TTTAGCAACATAGTG---GAGTTGAGTAAAATTGAAAACAGGTTTCCCATTTTCT 122869 Query 153618 ATAT------ATTTGTTGACGGCAATCGACGCCAAGTTGCAAACGGCAGTTTCGTCGGGG 153671 |||| || | |||| ||||| ||| | | || || || ||| ||| || || Sbjct 122868 ATATCAACAAATCTATTGAGAGCAATAGACCCTAGATTACATACAGCAACTTCATCTGGT 122809 Query 153672 GCGCAATATTGTACTATTTCCGCACACAAATTGCTGCATTTTATCAGGCCGCAATTACTT 153731 | ||||||| || || || | ||| | ||| || || || || ||| | Sbjct 122808 GAACAATATTCAACGATCTCGGTACAGAGATTAGAACACTTGATAGTTCCAAGATTTTGT 122749 Query 153732 TGATTGCTTTTGCGGTTACAAGCGTCCTTGTATAGCATGTATGGTGTGCCGGTTTC 153787 ||||| ||||| || |||||| || || || | |||||| |||||||| ||||| Sbjct 122748 TGATTACTTTTCCGATTACAATGATCTTTATAAACCATGTAAGGTGTGCCAGTTTC 122693 >seq3059 Length=2231 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | |||||| |||| || ||||| ||||||||||| || || Sbjct 972 CCTCCACGGAGACGGAGAACTAAATGAAGGGTTGACTCCTTTTGAATGTTGTAGTCAGAA 913 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || || || |||||||| |||||| |||| | | ||| || || || || Sbjct 912 AGAGTTCTTCCATCCTCAAGCTGTTTTCCAGCAAAGATTAATCTTTGTTGGTCTGGTGGA 853 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||||||||| ||| ||| || | | || | ||||| | || || ||| Sbjct 852 ATACCTTCTTTGTCTTGGATCTTTGACTTAACGTTGTCAATGGTGTCAGAAGGTTCTACC 793 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 || | || | || || || ||||| || || || || || |||||| || Sbjct 792 TCGAGAGTAATAGTTTTTCCAGTCAAGGTCTTAACAAAGATCTGCATACCT 742 Score = 82.4 bits (90), Expect = 8e-11 Identities = 159/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || || |||| || ||||| ||||| ||||| ||||| Sbjct 288 CCTCCACGGAGACGGAGGACCAAATGAAGGGTTGACTCCTTTTGGATGTTGTAATCAGAG 229 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || ||||| || ||||| |||||| | || | | ||| || || || || Sbjct 228 AGAGTTCTTCCATCTTCAAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGGTCTGGTGGA 169 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||||||||| ||| | || | ||| | | || | ||||||| || || || Sbjct 168 ATTCCTTCTTTGTC-TTGAATCTTGGATTTGACATTGTCAATAGTGTCGGAAGGTTCTAC 110 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 ||||| || | ||||| || || || || || ||||| || |||||| || Sbjct 109 CTCAAGAGTAATGGTCTTTCCAGTTAAAGTCTTGACGAAGATCTGCATACCT 58 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496034837637600