Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20papillosus_20[genbank_20GCA_5F000936265.1_202014-11- 13] 4,703 sequences; 60,447,969 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1 502 4e-137 seq64 259 7e-64 >seq1 Length=1686976 Score = 502 bits (556), Expect = 4e-137 Identities = 1247/1868 (67%), Gaps = 61/1868 (3%) Strand=Plus/Plus Query 78738 TGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAGAA 78797 ||| ||||| || | || ||| |||||||| ||||| | ||| |||| || || || Sbjct 914631 TGCCGGTTTAGTTCTTAAATAATACATTCCTGTTTTCAAACCATTTTTCCAACCATAAAA 914690 Query 78798 ATGCAT---ACTCGTTAGTTTGGAATAACTCGGATCTGCT-ATATGGATATTCATAGATT 78853 |||||| ||| || | |||| | || ||| | | ||| | ||| | |||| Sbjct 914691 ATGCATTGAACTACATATTCC---ATAAGTTGG-TCTATTTACATGAAGATTAAGTGATT 914746 Query 78854 GACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAA 78913 || |||||| | |||| || | || ||||||| || || | |||||||||| Sbjct 914747 GAGATTGATCAACAAAGGGACCACGATCAATTGCCATTTCAATAATAGCTTTTTGTGGAA 914806 Query 78914 TTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGTT---TGTATTCTGAA 78970 ||||||||| ||||||||||| | | |||| | ||||| | | |||| |||| Sbjct 914807 TTTCCCAAACAGTTTTATAAAGTTCTCTGATATGTAATGGAATATCGCATATATTTTGAA 914866 Query 78971 TGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTCCATAATTTTCTCTCGG 79030 | || ||| || | | || || ||| || || || ||||| | | | || Sbjct 914867 TAGACCCATTATTTTCAATTATTTGATTAAGAATTTCCTCGTTCCAAA---TACCAAGGG 914923 Query 79031 T---TAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCC 79087 | |||| ||| |||||||| | ||| || | |||||| || ||||| || || | | Sbjct 914924 TAATTAAATCTCGTAGGAGATGAGTATTTACAATTTGAAAATCACCAGATAAAACCCGTC 914983 Query 79088 GAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGCAG 79147 || || | ||| || |||||||| | ||||||||| | || | ||| |||| | Sbjct 914984 TTGTATATAAATTTGATGTGTATGGTTCAATAGATTCATTACTGCCAAGAATCTGAGATG 915043 Query 79148 TTGATGCCGTTGGCAT---AGGTGCCACCAATAAACTATTTCTAAGACCGTATGATCTGA 79204 | || || || ||||| || | | | |||| || || | || || || | Sbjct 915044 TAGAAGCAGTGGGCATTAAAGATACTAACAATGAATTA---CGAATGCCAAATTTAGAAA 915100 Query 79205 TTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGACGGGACAACATTCCAAAGATCAT 79264 |||| || || | | || ||||| ||| | || || |||| ||| | |||| Sbjct 915101 TTTTCTCCTTCAAACTTTTCCAATTCCATAAATTGCTTGGAGTAACACCCCACATGTCAT 915160 Query 79265 ATTGTAGAATACCGTTACTAGCGTATGATCCTGTGTATGTTTCATAAGGTCCTTCCTTTT 79324 | || ||||| || ||| | |||||| |||||||||| | ||| | | | Sbjct 915161 ACTGAAGAATTCCTTTAGATACAGGTGATCCATCAAATGTTTCATAGGATCCATGAATCT 915220 Query 79325 CGGCTAATTCACAACTCGCCTCTAATGCTCCGTAATAAATGGTTTCGAAAATCTTCTTAT 79384 ||||||||||| ||||| | ||| || | |||||| ||||| || || ||||||| Sbjct 915221 TTGCTAATTCACAGGAAGCCTCAAGTGCACCATGATAAATAGTTTCAAAGATTTTCTTAT 915280 Query 79385 TGAGATCTTGTGCTTCTAG-GCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCT 79443 |||||||| |||||| | | | | ||||||||| || | ||| | ||| || ||||| Sbjct 915281 TGAGATCTCTAGCTTCTGGTGATGT-AAATGGATATTTCATGAGTAAAAATGCATCTGCA 915339 Query 79444 AATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGA 79503 | |||||| || ||||| || ||||| | |||| | |||| || | || || Sbjct 915340 AGTCCTTGTACTCCAATTCCAATAGGACGATGTTTAGTATTTGATAAACGTGCCTCCTCC 915399 Query 79504 ATAGGATAATAATTAATATCTATAATTTTATTGAGATTCCTGACTATTACTTTGACCACA 79563 | ||||||| ||||||||| |||| || || | |||| | | | ||| ||| Sbjct 915400 AGTGGATAATGATTAATATCAATAACCTTGTTCAAATTCTTTGTCAAAATTTTTGCCATG 915459 Query 79564 TCCTTTAG---TTTGAGAAAATCAAAT---CGTCCAT-CTATT--------ACAAACATG 79608 | | || ||| ||||||||| ||| | || || ||||| | Sbjct 915460 TTATGAAGACGTTT---AAAATCAAAAACACGTTTTTTCTCTTTAATCACGACAAAATTA 915516 Query 79609 TTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATT 79668 || | || | ||| ||| ||||||||| || || ||||||| | | |||| | Sbjct 915517 TTAAGTGCAATAGACCCCAAATTACAAACAGCAACTTCATTAGGGGAAGAAAATTGAACA 915576 Query 79669 ATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTG 79728 ||||||| || || || ||| || || ||||||||||||||||||||||| || | Sbjct 915577 ATTTCAGCACAAAGATTTGAACATTTTATTGTTCCTAAATTTTGTTGATTACTTTTACGG 915636 Query 79729 TTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATC 79788 ||||| |||||| ||||| || | ||| |||| || || ||||||||||| |||| Sbjct 915637 TTACAATGATCCTTGTAAAGCATATATGGAATACCCGTCTCTATCTGAGATTCACAAATC 915696 Query 79789 GCTTTCCAGACGACTCGAGCCTTTATTATAGACTTGTATCTCTTTTCTCTTTCGTATTGT 79848 | ||| | || || |||| | | | || | ||||| |||| |||||| Sbjct 915697 TTCTGCCAAATATATCTGGCTTTTACTTGTTTCCTATAACGATTTTCATTTTCATATTGT 915756 Query 79849 GTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGA 79908 || | | || || || || || || ||| || | || |||||||| | |||| Sbjct 915757 ACGTAAAGTTTATCAAAATCATCACCAAAACAATCATCAAGACCCGGACATTCATTAGGA 915816 Query 79909 CACATCAACGACCACTCTCCATCATCCTTT--ACTCGTTTCATAAAGAGATCAGGAATCC 79966 ||||| |||||||| | | ||| |||| || ||||||||||| | ||| |||| || Sbjct 915817 CACATTAACGACCAATGTGAATCG--CTTTCAACACGTTTCATAAATAAATCTGGAACCC 915874 Query 79967 AAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGAT 80026 |||| | ||||| ||| | | ||| | || || |||||| |||||||| | | Sbjct 915875 AAAGTCCGTAAAATAAATCGCGTGCTCTTTCTTCTTCTGGTCCTGTGTTCTTTTTTAACT 915934 Query 80027 CGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTC 80086 | || || |||||||| | |||||| |||||||| ||||| || | | || |||| Sbjct 915935 CAAGAAATTGGATAATATCTGCATGCCATGGTTCCAAATATATAGCAAATGCACCAGGTC 915994 Query 80087 GTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAA 80146 ||| || || || ||||| | || | | | || |||| ||||| | |||||||||| Sbjct 915995 TTTTATTGCCACCTTGATCAACATAACGAACAGTACTATTGTAAACACGTAACATTGGAA 916054 Query 80147 TAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTAC 80206 | |||||| || | ||||| || || || ||| | ||| ||||||| || ||| Sbjct 916055 CCAAACCATTTGAAGATCCATTAGTTCCAGAAATAAATGATCCTGTGGCACGGATTGTAC 916114 Query 80207 TAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTAT 80266 | || || |||| ||||| ||| | || || || | || ||||| ||||| || | Sbjct 916115 TGATACTTAATCCTACCCCCCCAGCCGTCTTTGAAATAACAGCACATCGCTTTAAAGTGT 916174 Query 80267 CATAGATGCCCTCTATGCTATCATCAATCAT-GTTAAGTAGAAAACAGCTAGACATTTGG 80325 ||||||| || || || ||||||| |||| ||||| | ||| ||| | | | || Sbjct 916175 CATAGATTCCTTCAATAGAATCATCACTCATCGTTAA-CAAAAAGCAGGAACAAAGCTGA 916233 Query 80326 TGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAC 80385 | || || || ||||||||||| || ||||| | || |||| | || ||| Sbjct 916234 GGTCGTAGGGTACCAGCATTAAATAACGTTGGAGATCCATGGATAAAAAGTCGTTTTGAC 916293 Query 80386 AGTAGAT-TGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGAC 80444 | || || |||| |||| |||||| ||| | ||||| |||||| || | || || Sbjct 916294 A-TATATCTGTATGTCTGAATAGCAGATGCAATATCTTCACCATGAATACCAATGGCAAC 916352 Query 80445 ACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGA 80504 |||||| | ||| || |||||||||||||| || || |||||||||||||| || || || Sbjct 916353 ACGCATAAGCATATGTTGAGGTCTTTCAACAATTTTATTATTTATTTTCAATAAATATGA 916412 Query 80505 TTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA---TGAAAAGTCTCGTTCGTAAA--TA 80559 | ||| || || ||||| ||||| || |||| || ||| |||| || |||| || Sbjct 916413 TCGTTCTAATGTCTTAAATCCAAAGTA--TGTAAAGTGGAAA-TCTCTTT--TAAATCTA 916467 Query 80560 ATAACCGA 80567 ||||| || Sbjct 916468 ATAACTGA 916475 >seq64 Length=153875 Score = 259 bits (286), Expect = 7e-64 Identities = 471/679 (69%), Gaps = 28/679 (4%) Strand=Plus/Minus Query 79249 ACATTCCAAAGATCATATTGTAGAATACCGTTA----CTAGCGTATGATCCTGTGTATGT 79304 |||||||| | ||| ||||| ||||| || ||| || ||| ||||| || || Sbjct 123225 ACATTCCACATATCGTATTGAAGAATTCCCTTAGATACTGGCG----ATCCTTCATAAGT 123170 Query 79305 TTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAATAAAT 79364 |||||||||||| || ||| || |||||||| ||||| || || || | ||||| Sbjct 123169 TTCATAAGGTCCATCACGTTCAGCCAATTCACATGAAGCCTCCAAGGCACCATGGTAAAT 123110 Query 79365 GGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATC-AAATGGATAATTTA 79423 ||||||||||||| ||||| || |||| |||| ||| | ||||||||| | | Sbjct 123109 TGTTTCGAAAATCTGTTTATTAAGTTCTTTAGCTTG-AGGTGAGGTAAATGGATATCTCA 123051 Query 79424 AGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTAT 79483 ||| || || || ||||| || ||||||||||||||||| || || | |||||| ||| Sbjct 123050 TGAGCATGAATGCATCTGCCAAACCTTGAACACCAATACCTATTGGACGGTGTCTCATAT 122991 Query 79484 TAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTCC 79543 ||||| | ||||||||||| || |||||||| | ||| ||||| ||||| | ||||| Sbjct 122990 TAGAATTCCTAGCTTCTGGAACTGGGTAATAATTCACATCGATAATCTTATTTAAATTCC 122931 Query 79544 TGACTATTACTTTGACCACATCCTTTAGTTTGAG--AAAATCAAATC--GT---CCA--- 79593 || | | ||| | |||| | || ||||| ||| | ||| | || ||| Sbjct 122930 TGGTCAAAATTTTAGCAACATAGTGGAG-TTGAGTAAAATTGAAAACAGGTTTCCCATTT 122872 Query 79594 TCTAT---TACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTA 79650 ||||| ||||| | || | || | ||| | |||||||| || || || |||| Sbjct 122871 TCTATATCAACAAATCTATTGAGAGCAATAGACCCTAGATTACATACAGCAACTTCATCT 122812 Query 79651 GCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTT 79710 | ||||| | || || || ||||| ||| |||||| || ||||| | |||| Sbjct 122811 GGTGAACAATATTCAACGATCTCGGTACAGAGATTAGAACACTTGATAGTTCCAAGATTT 122752 Query 79711 TGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCA 79770 ||||||||||| || ||||| ||| ||||||| ||| | || || ||||||||| Sbjct 122751 TGTTGATTACTTTTCCGATTACAATGATCTTTATAAACCATGTAAGGTGTGCCAGTTTCA 122692 Query 79771 ATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGACTTGTATCTC 79830 |||||| ||| |||| || ||| | |||| || || || | | || | | | Sbjct 122691 ATCTGACTTTCACAAATCTTTTGCCAAATAACTCTTGCTTTAAT--TTGCTTTCTGTAGC 122634 Query 79831 TTTTCTCTT--TCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTA 79888 |||||| | || |||| | |||||| ||||| || || |||||| ||| || | Sbjct 122633 GTTTCTCCTCCTCATATTTGATGTATAATTTCTCGAATTCATCACCCCAACAATCCTCAA 122574 Query 79889 ATCCAGGACATTCGTCAGG 79907 ||||||||||||| ||| Sbjct 122573 GCCCAGGACATTCGTGAGG 122555 Score = 208 bits (230), Expect = 1e-48 Identities = 488/729 (67%), Gaps = 8/729 (1%) Strand=Plus/Minus Query 80116 GCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCG 80175 || || |||||| |||| |||||||||||||| | ||||| ||||| ||||| ||||| Sbjct 122538 GCTGTATTATTAAAAACCCTCAACATTGGAATCAATCCATTTGATGTCCCATTTGTCCCA 122479 Query 80176 GAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATT 80235 ||| | ||| | || | |||| || || || || || ||||| | Sbjct 122478 CCAATAAATGAACCATTAGCTCTAATACAGTGAACATTTAAGCCAATACCACCTGCAGAT 122419 Query 80236 TTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATC 80295 || ||||| || |||||| | || | || || || || || ||||| |||| || | Sbjct 122418 TTCGAGATCAAAGCGCATTGCTTAAGTGTGTCGTAAATCCCTTCTATTGAATCACCAGCC 122359 Query 80296 AT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGT 80354 || ||||| ||||| || |||| || |||| ||||||||||| || ||||| || Sbjct 122358 ATTGTTAATAAGAAA-CATGAGGACAACTGAGGACGCCTAGTTCCCGCGTTGAATAAAGT 122300 Query 80355 AGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTC 80414 |||||||| || || ||||| || | ||||| || ||| |||||||| | || | Sbjct 122299 TGGAGAAGCATGAGTGAACCACTTCTGAGACATATAATCGTAAGTCTCAATGACAGAATT 122240 Query 80415 TATATCCCATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAAC 80474 ||||| | ||||| || || || |||||||| || | || |||||||| || | Sbjct 122239 AATATCTTCTCCGTGAATCCCAACAGCAACACGCATCAATAGATGTTGAGGTCTCTCGGC 122180 Query 80475 GATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTT 80534 || || |||||| || || | ||||| ||||| || || ||||| ||||| Sbjct 122179 AATTTTCCCATTTATCTTTAAAAGATAAGAACGCTCCAACGTCTTGAAACCGAAATAAGA 122120 Query 80535 GTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAAC 80594 | ||| || | | |||| ||| | ||||| |||||||| | || | Sbjct 122119 AAAGTCAAAATCCCTGTTATAAACAATTGCAGAGTTCAGTTTATCAGCGTTCTTCAGGAT 122060 Query 80595 TACATCCATGGTGATACTTGA--AATAATCGGAGAATGTTTCCCATTTTTAGGATTAACA 80652 | ||| ||| | ||| | || || || ||| || | || || Sbjct 122059 GATATC--GTGTGTTTCTTTACTTATCATTGGCATATGAACTCCTGTAATATTATGGCGG 122002 Query 80653 TAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTT 80712 ||||| ||||||| ||||| |||||| || || ||||||| || || | ||| Sbjct 122001 TAGTTATATAAATCATCCATTACTTCAGAGAAACTCTTCTTTGTTTGTTTATGCATGTTT 121942 Query 80713 GATACGGCTATTCTGGCGGCTAAAATGGCATAATCTGGATGTTGTGTAGTACAAG-TGGC 80771 || | ||| ||||| || ||||| || |||||||| ||||| ||| || || | | || Sbjct 121941 GAAATGGCGATTCTTGCTGCTAATATAGCATAATCAGGATGAATTGTTGT-CATGTTAGC 121883 Query 80772 TGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTG 80831 ||| | ||| ||||| ||| | || || || ||||||| ||| |||||||| | ||| || Sbjct 121882 TGCAACTTCTGCTGCAAGATTATCTAACTCAACCGTTGATACACCATTATACAGTCCCTG 121823 Query 80832 GATAACCTT 80840 |||||| || Sbjct 121822 GATAACTTT 121814 Score = 102 bits (112), Expect = 1e-16 Identities = 234/344 (68%), Gaps = 9/344 (3%) Strand=Plus/Minus Query 78739 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAGAAA 78798 || ||||| || | || |||||||| |||||||||| || | |||| |||| ||| Sbjct 123684 GCAGGTTTAGTTCTTAAGTAGTACATCCCCGTTTTTAATCCACGTTTCCAACCGTGAAAA 123625 Query 78799 TGCATACTCGTTAGTTTGGAATAACTCGGATCT-GCTATATGGATATTCATAGATTGACT 78857 |||||| | | | ||| || ||| || | ||| | || | ||||| Sbjct 123624 TGCATAGAACTACAAATTGCATATGATGG-TCTAGCCACATGAAGGTTAAGGGATTGTGA 123566 Query 78858 TTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGA-ATTT 78916 |||||| ||||| || || | || |||||||| | || || ||||| ||| |||| Sbjct 123565 TTGATCAATGAAAGCACCACGATCAGCAGCCATCTCAATAATA-TCTTTCTGGGAGATTT 123507 Query 78917 CCCAAATAGTTTTATAAA-CTCGCTTAATATCTTCTGGAA---GGTTTGTATTCTGAATG 78972 |||| | ||||||||||| ||| |||||||| | || | ||| |||| || || Sbjct 123506 CCCATACAGTTTTATAAAGCTC-TTTAATATCATTGGGTATTTCTTTTATATTTTGGATA 123448 Query 78973 GATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTCCATAATTTTCTCTCGGTT 79032 |||||| ||| || || || |||| | | ||||| ||||||| || || || Sbjct 123447 GATCCATTATCAGCTATTATTTCATTCATTAGTTCTTCGGTCCATAAGTTAAGTTCAATT 123388 Query 79033 AAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGA 79076 ||| || |||| ||||| ||||| || | ||| || || ||||| Sbjct 123387 AAATCTTTAAGAAGATGTGGATTTACAATTTGGAAATCACCAGA 123344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718226574772920