Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20papillosus_20[genbank_20GCA_5F000936265.1_202014-11- 13] 4,703 sequences; 60,447,969 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq21 273 2e-68 >seq21 Length=323752 Score = 273 bits (302), Expect = 2e-68 Identities = 555/812 (68%), Gaps = 18/812 (2%) Strand=Plus/Plus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13583 || |||||| | ||||||| ||||||| || || | | || || || || | ||| Sbjct 30198 TAGAAATCAGCGTCTAATGTAAAAACACGTTCCTCCTCTGTGGACATTACACCGAATTTC 30257 Query 13584 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13643 || |||||| ||| | || |||||||| || ||||| ||||| | ||| | ||| || Sbjct 30258 TGGTATTCAGATACTTTCTTCTCAAAGAAATTGGTTTTGCCTTCAATTGAGAGATTAACC 30317 Query 13644 ATAAAATCAAATGGATT--TATTGACATAAACACTTTATCACAACCTAGTTCTAATAGTA 13701 |||||||||||||| || || | ||||| |||| | |||| ||||||| | || Sbjct 30318 ATAAAATCAAATGGGTTCTTAGTATTATAAAG-CTTT-TGACAATTAAGTTCTACCAATA 30375 Query 13702 ATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTT 13761 ||| |||| | |||| ||||| | | |||||||| | ||||||| || || | | Sbjct 30376 GATGATCGGCAACATACTCGATATAATCACACATTAAACCTGAATTCATTCCGATCATAT 30435 Query 13762 TTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAA 13821 ||||||| || || | | |||| ||||| ||| || || ||| | || || Sbjct 30436 CAACAGGAAGAGCATCAGTAAGATATTCCTTTTCAATACTAACGGCATCTCTAATTATTT 30495 Query 13822 TTGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTT--TAAAAATTAAACACGCAAA 13879 | ||| || | ||| || | || | | || | | || | ||| ||||| Sbjct 30496 CCTTTATACGTTCTTCAGATGGCT--TGTTCTCCAAGTAACTGTACATAAGACATGCAAA 30553 Query 13880 ATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCAT 13939 ||||| || | |||||||||| ||| | || || ||| |||||| || ||||| Sbjct 30554 ATCACGGTGTAACCCCTCATCTCGGGAAATCAACTCATTCGAATGTGTTAACCCGGGCAT 30613 Query 13940 CAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTC 13999 ||| || ||||| || | ||| ||||| ||||||||||| || || ||||||||||| || Sbjct 30614 CAAGCCACGTTTCTTAAGCCAGAATATGGCAGCAAATGAACCAGAGAAGAATATTCCTTC 30673 Query 14000 AACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTT 14059 ||| || ||||| || |||| ||||||||||| | || ||||||| | |||||| | Sbjct 30674 AACAGCTGCAAAAGCAATTACACGTTCTCCAAAAGTAGCGTTTTTGTCGGCAATCCATCT 30733 Query 14060 TCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATA-AAT 14118 | |||||| |||| ||| ||| | || ||| | | || | ||| || || | | Sbjct 30734 TAGAGCCCAATCAGCTTTCTTTCTGATGAAAGGAAATTCATCCAAAGCGTTGAAGAGTTT 30793 Query 14119 ATTCCT-TC-TCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGA 14176 ||| || || || | | || |||||| || ||||||||| ||||| ||| Sbjct 30794 ATTTCTCTCATCCTGATCAC---GAATGTAGGTTTCAATAAGTTTCGAGTACATCTCACT 30850 Query 14177 GTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTC--CGACCATTGT 14234 || || |||||||| || || ||||||||||| || | | || || |||| || Sbjct 30851 ATGAATATTTTCCATGGCAATTTGAAAACCATAGAAAAAGCGTGCCTCGGGGACC--TGG 30908 Query 14235 ACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAA 14294 |||||| |||||||||| | ||||| || ||||| |||||||| || ||||| Sbjct 30909 ACTTCCTTTGAAAATCTTTCAACTAAATTCTCGTTAACGATACCATCCGATGCAGCAAAG 30968 Query 14295 AATGCCAATATGTTTTTAATAAAGTATTGCTC 14326 || || || | || |||||||| |||| Sbjct 30969 AAGGCTAACACTCTTGAGATAAAGTAGCGCTC 31000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479699797990200