Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20papillosus_20[genbank_20GCA_5F000936265.1_202014-11- 13] 4,703 sequences; 60,447,969 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq21 260 1e-64 >seq21 Length=323752 Score = 260 bits (288), Expect = 1e-64 Identities = 557/823 (68%), Gaps = 18/823 (2%) Strand=Plus/Plus Query 13302 TAATAAAAAC--TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATA 13359 ||| || ||| || |||||| | ||||||| ||||||| || || | | || || Sbjct 30186 TAAAAATAACATTAGAAATCAGCGTCTAATGTAAAAACACGTTCCTCCTCTGTGGACATT 30245 Query 13360 ACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGT 13419 || || | ||| || |||||| ||| | || ||||| || || ||||| ||||| | | Sbjct 30246 ACACCGAATTTCTGGTATTCAGATACTTTCTTCTCAAAGAAATTGGTTTTGCCTTCAATT 30305 Query 13420 GATATATTTTCCATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGT 13479 || | ||| |||||||||| ||||| || | | || | | || | |||| ||| Sbjct 30306 GAGAGATTAACCATAAAATCAAATGGGTTCTTAGTATTATAAAGCTTTTGACAATTAAGT 30365 Query 13480 TCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATA 13539 |||| |||| ||| |||| | |||| ||||| | | |||||||| | ||||||| Sbjct 30366 TCTACCAATAGATGATCGGCAACATACTCGATATAATCACACATTAAACCTGAATTCATT 30425 Query 13540 CCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCG 13599 || || | | ||||||| || ||| | | |||| ||||| ||| || || || Sbjct 30426 CCGATCATATCAACAGGAAGAGCATCAGTAAGATATTCCTTTTCAATACTAACGGCATCT 30485 Query 13600 TTTATAATAATCTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTT--TAAAAATTA 13657 | || || ||| ||| || | ||| || | || | | || | | || | Sbjct 30486 CTAATTATTTCCTTTATACGTTCTTCAGATGGCT--TGTTCTCCAAGTAACTGTACATAA 30543 Query 13658 AACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTA 13717 ||| |||||||||| || | |||||||||| ||| | || || ||| ||||| Sbjct 30544 GACATGCAAAATCACGGTGTAACCCCTCATCTCGGGAAATCAACTCATTCGAATGTGTTA 30603 Query 13718 ATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGA 13777 | || |||||||| || ||||| || | ||| ||||| ||||| ||||| || || |||| Sbjct 30604 ACCCGGGCATCAAGCCACGTTTCTTAAGCCAGAATATGGCAGCAAATGAACCAGAGAAGA 30663 Query 13778 ATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTG 13837 ||||||| ||||| || ||||| || |||| ||||||||||| | || ||||||| | Sbjct 30664 ATATTCCTTCAACAGCTGCAAAAGCAATTACACGTTCTCCAAAAGTAGCGTTTTTGTCGG 30723 Query 13838 ATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCAT 13897 |||||| || |||||| |||| ||| ||| | || ||| | | || | || | Sbjct 30724 CAATCCATCTTAGAGCCCAATCAGCTTTCTTTCTGATGAAAGGAAATTCATCCAAAGCGT 30783 Query 13898 TGAATAAATGTTCCTTCTCTTTAGTACT--TGA--AATGTATGTATCAATAAGTAAGCTA 13953 |||| | ||| || ||| | | || | | |||||| || ||||||||| Sbjct 30784 TGAAGA---GTTTATT-TCTCTCATCCTGATCACGAATGTAGGTTTCAATAAGTTTCGAG 30839 Query 13954 TACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTC- 14012 ||||| ||| || || ||||| || || || ||||||||||| ||| | | || || Sbjct 30840 TACATCTCACTATGAATATTTTCCATGGCAATTTGAAAACCATAGAAAAAGCGTGCCTCG 30899 Query 14013 -TGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCAC 14071 |||| || || ||| |||||||||| | || || || ||||| |||||||| Sbjct 30900 GGGACC--TGGACTTCCTTTGAAAATCTTTCAACTAAATTCTCGTTAACGATACCATCCG 30957 Query 14072 TAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTC 14114 || ||||| || || || | || |||||||| |||| Sbjct 30958 ATGCAGCAAAGAAGGCTAACACTCTTGAGATAAAGTAGCGCTC 31000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478560664960920