Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20papillosus_20[genbank_20GCA_5F000936265.1_202014-11- 13] 4,703 sequences; 60,447,969 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq1 466 2e-126 seq64 235 7e-57 seq108 84.2 3e-11 >seq1 Length=1686976 Score = 466 bits (516), Expect = 2e-126 Identities = 1237/1872 (66%), Gaps = 65/1872 (3%) Strand=Plus/Plus Query 70821 TGCGGCTTTCGTACGTAGATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAA 70880 ||| | ||| || | || ||| ||||| |||||||| | ||| |||| || ||||| Sbjct 914631 TGCCGGTTTAGTTCTTAAATAATACATTCCTGTTTTCAAACCATTTTTCCAACCATAAAA 914690 Query 70881 ATGCAT---ACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGT----GAATATTCATCG 70933 |||||| ||| || || | || | | | |||| | ||| ||| | | Sbjct 914691 ATGCATTGAACTACATA--TTCCA-----TAAGTTGGTCTATTTACATGAAGATTAAGTG 914743 Query 70934 ACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTG 70993 | ||| |||||| | |||| || | || ||||||| || || | ||||||| Sbjct 914744 ATTGAGATTGATCAACAAAGGGACCACGATCAATTGCCATTTCAATAATAGCTTTTTGTG 914803 Query 70994 GAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGTT---TGTATTCT 71050 |||||||||||| ||||||||||| | | |||| | ||||| | | |||| | Sbjct 914804 GAATTTCCCAAACAGTTTTATAAAGTTCTCTGATATGTAATGGAATATCGCATATATTTT 914863 Query 71051 GAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCTCT 71110 |||| || ||| || | |||| || ||| || || || ||||| | | | Sbjct 914864 GAATAGACCCATTATTTTCAATTATTTGATTAAGAATTTCCTCGTTCCAAA---TACCAA 914920 Query 71111 CGGT---TAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTC 71167 ||| |||| ||| |||||||||| ||| || | |||||| || ||||| || || | Sbjct 914921 GGGTAATTAAATCTCGTAGGAGATGAGTATTTACAATTTGAAAATCACCAGATAAAACCC 914980 Query 71168 TACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAG 71227 | || || | ||| || || ||||| | || |||||| | || | ||| |||| Sbjct 914981 GTCTTGTATATAAATTTGATGTGTATGGTTCAATAGATTCATTACTGCCAAGAATCTGAG 915040 Query 71228 CAGTTGATGCAGTCGGCAT---AGGTGCCACCAATAGACTATTTCTAAGACCATGTGATC 71284 || || ||||| ||||| || | | | |||| || ||| | || ||| | Sbjct 915041 ATGTAGAAGCAGTGGGCATTAAAGATACTAACAAT-GA--ATTACGAATGCCAAATTTAG 915097 Query 71285 GGATTTTATCTTTTAGAGATTCCCAATTCCAAAGATCCGATGGTACAACNNNNNNNNNNN 71344 ||||| || || | | || ||||||||| | || ||| ||| Sbjct 915098 AAATTTTCTCCTTCAAACTTTTCCAATTCCATAAATTGCTTGGAGTAACACCCCACATGT 915157 Query 71345 NNNNNNNNNNNATGCCGTTACTAGCGTATGATCCTGCATATGTATCGTATGGTCCTTCTT 71404 || || ||| | |||||| || |||| || || | ||| | Sbjct 915158 CATACTGAAGAATTCCTTTAGATACAGGTGATCCATCAAATGTTTCATAGGATCCATGAA 915217 Query 71405 TTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCT 71464 | | |||| |||||| ||||| | ||| |||| |||||| ||||| || || |||| Sbjct 915218 TCTTTGCTAATTCACAGGAAGCCTCAAGTGCACCATGATAAATAGTTTCAAAGATTTTCT 915277 Query 71465 TATTGAGATCTTGTGCTTCCGG-GCTATCAAATGGATAATTTAAGAGAATAAACGCGTCT 71523 ||||||||||| ||||| || | | | ||||||||| || | ||| | ||| || ||| Sbjct 915278 TATTGAGATCTCTAGCTTCTGGTGATGT-AAATGGATATTTCATGAGTAAAAATGCATCT 915336 Query 71524 GCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCT 71583 || | |||||| || ||||| || ||||| | ||| | |||| || | || || Sbjct 915337 GCAAGTCCTTGTACTCCAATTCCAATAGGACGATGTTTAGTATTTGATAAACGTGCCTCC 915396 Query 71584 GGAATAGGATAATAATTAATATCTATAATTTTATTGAGATT-TCTGACTATTACTTTGAC 71642 | ||||||| ||||||||| |||| || || | ||| | || | | |||| | Sbjct 915397 TCCAGTGGATAATGATTAATATCAATAACCTTGTTCAAATTCTTTGTCAAAATTTTTG-C 915455 Query 71643 CACATCCTTTAG---TTTGAGAAAATCAAA---------TCTCCCATCTATTACAAACAC 71690 || | | || ||| ||||||||| | || | | || || | | Sbjct 915456 CATGTTATGAAGACGTTT---AAAATCAAAAACACGTTTTTTCTCTTTAATCACGACAAA 915512 Query 71691 GTTC--AAG-GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTG 71747 || ||| |||| ||| ||| ||||||||| || || ||||||| | | |||| Sbjct 915513 ATTATTAAGTGCAATAGACCCCAAATTACAAACAGCAACTTCATTAGGGGAAGAAAATTG 915572 Query 71748 TATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTT 71807 | |||||||| |||||||| ||| || || ||||||||||||||||||||||| || Sbjct 915573 AACAATTTCAGCACAAAGATTTGAACATTTTATTGTTCCTAAATTTTGTTGATTACTTTT 915632 Query 71808 TTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTAT 71867 |||||| |||||| ||||| ||| | ||| |||| || || ||||||||||| Sbjct 915633 ACGGTTACAATGATCCTTGTAAAGCATATATGGAATACCCGTCTCTATCTGAGATTCACA 915692 Query 71868 AATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGTATCTCTTTTCTCTTTCGTA 71927 |||| | ||| | || || |||| | ||| | || | ||||| |||| || Sbjct 915693 AATCTTCTGCCAAATATATCTGGCTTTTACTTGTTTCCTATAACGATTTTCATTTTCATA 915752 Query 71928 TTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATT 71987 |||| || | | || || || || || || || || | || ||||||||||| Sbjct 915753 TTGTACGTAAAGTTTATCAAAATCATCACCAAAACAATCATCAAGACCCGGACATTCATT 915812 Query 71988 CGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAAT 72047 |||||||| || ||||| | | ||| | || ||||||||||| | ||| |||| Sbjct 915813 AGGACACATTAACGACCAATGTGAATCGCTTTCAACACGTTTCATAAATAAATCTGGAAC 915872 Query 72048 CCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAG 72107 |||||| | ||||| ||| | | ||| | || || |||||| |||||||| | Sbjct 915873 CCAAAGTCCGTAAAATAAATCGCGTGCTCTTTCTTCTTCTGGTCCTGTGTTCTTTTTTAA 915932 Query 72108 ATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGG 72167 || || || |||||||| | |||||| |||||||| ||||| || | | || || Sbjct 915933 CTCAAGAAATTGGATAATATCTGCATGCCATGGTTCCAAATATATAGCAAATGCACCAGG 915992 Query 72168 CCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG 72227 | ||| || || || ||||| | || | | | || |||| ||||| | |||||||| Sbjct 915993 TCTTTTATTGCCACCTTGATCAACATAACGAACAGTACTATTGTAAACACGTAACATTGG 916052 Query 72228 AATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATT 72287 || | |||||| || | ||||| || || || ||| | ||| ||||||| || | Sbjct 916053 AACCAAACCATTTGAAGATCCATTAGTTCCAGAAATAAATGATCCTGTGGCACGGATTGT 916112 Query 72288 GCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGT 72347 || || || |||| ||||| ||| | || || || | || ||||| ||||| || Sbjct 916113 ACTGATACTTAATCCTACCCCCCCAGCCGTCTTTGAAATAACAGCACATCGCTTTAAAGT 916172 Query 72348 ATCATAGATGCCCTCTATACTATCATCCATCAT-GTTAAGTAGAAAACAGCTAGACATTT 72406 |||||||| || || ||| |||||| |||| ||||| | ||| ||| | | | | Sbjct 916173 GTCATAGATTCCTTCAATAGAATCATCACTCATCGTTAA-CAAAAAGCAGGAACAAAGCT 916231 Query 72407 GGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAG 72466 | | || || || ||||||||||| || ||||| | || |||| | || | Sbjct 916232 GAGGTCGTAGGGTACCAGCATTAAATAACGTTGGAGATCCATGGATAAAAAGTCGTTTTG 916291 Query 72467 ACAGTAGAT-TGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCG 72525 ||| || || |||| |||| |||||| ||| | ||||| ||| || || | || Sbjct 916292 ACA-TATATCTGTATGTCTGAATAGCAGATGCAATATCTTCACCATGAATACCAATGGCA 916350 Query 72526 ACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAG 72585 |||||||| | |||||| |||||||||||||| || || |||||||||||||| || || Sbjct 916351 ACACGCATAAGCATATGTTGAGGTCTTTCAACAATTTTATTATTTATTTTCAATAAATAT 916410 Query 72586 GATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA---TGAAAAGTCTCGTTCGTAAA-- 72640 ||| ||| || || ||||| ||||| || |||| || ||| |||| || |||| Sbjct 916411 GATCGTTCTAATGTCTTAAATCCAAAGTA--TGTAAAGTGGAAA-TCTCTTT--TAAATC 916465 Query 72641 TAATAACCGAAT 72652 ||||||| |||| Sbjct 916466 TAATAACTGAAT 916477 >seq64 Length=153875 Score = 235 bits (260), Expect = 7e-57 Identities = 431/626 (69%), Gaps = 18/626 (3%) Strand=Plus/Minus Query 71374 GATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAAT 71433 |||||| |||| || || || ||||| || ||| || | |||||| ||||| || Sbjct 123183 GATCCTTCATAAGTTTCATAAGGTCCATCACGTTCAGCCAATTCACATGAAGCCTCCAAG 123124 Query 71434 GCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCA 71493 || |||| ||||| ||||||||||||| ||||| || |||| |||| || | Sbjct 123123 GCACCATGGTAAATTGTTTCGAAAATCTGTTTATTAAGTTCTTTAGCTTGAGGTGAGGTA 123064 Query 71494 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGT 71553 |||||||| | | ||| || || || ||||| || |||||||| |||||||| || || Sbjct 123063 AATGGATATCTCATGAGCATGAATGCATCTGCCAAACCTTGAACACCAATACCTATTGGA 123004 Query 71554 CTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATT 71613 | ||||||| |||||||| | ||||||||||| || |||||||| | ||| ||||| Sbjct 123003 CGGTGTCTCATATTAGAATTCCTAGCTTCTGGAACTGGGTAATAATTCACATCGATAATC 122944 Query 71614 TTATTGAGATTTCTGACTATTACTTTGACCACATCCTTTAGTTTGAG-AAAAT------C 71666 ||||| | ||| ||| | | ||| | |||| | || ||||| ||||| | Sbjct 122943 TTATTTAAATTCCTGGTCAAAATTTTAGCAACATAGTGGAG-TTGAGTAAAATTGAAAAC 122885 Query 71667 AAATCTCCCA---TCTAT---TACAAACACGTTCAAGGCAACAGATGCCAGATTACAAAC 71720 | | ||||| ||||| ||||| || | |||| ||| | |||||||| || Sbjct 122884 AGGTTTCCCATTTTCTATATCAACAAATCTATTGAGAGCAATAGACCCTAGATTACATAC 122825 Query 71721 GGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGAT 71780 || || |||| | ||||| | || || || || |||||| ||||||||| Sbjct 122824 AGCAACTTCATCTGGTGAACAATATTCAACGATCTCGGTACAGAGATTAGAACACTTGAT 122765 Query 71781 GGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGG 71840 ||||| | ||||||||||||||| || ||||| ||| ||||||| || | || Sbjct 122764 AGTTCCAAGATTTTGTTGATTACTTTTCCGATTACAATGATCTTTATAAACCATGTAAGG 122705 Query 71841 AGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTAT 71900 || ||||||||||||||| ||| |||| || ||| | |||| || || ||| Sbjct 122704 TGTGCCAGTTTCAATCTGACTTTCACAAATCTTTTGCCAAATAACTCTTGCTTTAATTTG 122645 Query 71901 ATTCTTGTATCTCTTTTCTCTT--TCGTATTGTGTATATAATCGTTCGAACTCGTCTCCC 71958 || |||| | |||||| | || |||| | |||||| ||||| || || ||| Sbjct 122644 CTTTCTGTA--GCGTTTCTCCTCCTCATATTTGATGTATAATTTCTCGAATTCATCACCC 122587 Query 71959 CAAGCATTGTCTAATCCAGGACATTC 71984 ||| || || | ||||||||||| Sbjct 122586 CAACAATCCTCAAGCCCAGGACATTC 122561 Score = 199 bits (220), Expect = 5e-46 Identities = 486/729 (67%), Gaps = 8/729 (1%) Strand=Plus/Minus Query 72199 GCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCG 72258 || || |||||| |||| |||||||||||||| | ||||| |||| ||||| ||||| Sbjct 122538 GCTGTATTATTAAAAACCCTCAACATTGGAATCAATCCATTTGATGTCCCATTTGTCCCA 122479 Query 72259 GAGATATAGCTTCCACTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATT 72318 ||| | ||| | || | |||| | || || || || || ||||| | Sbjct 122478 CCAATAAATGAACCATTAGCTCTAATACAGTGAACATTTAAGCCAATACCACCTGCAGAT 122419 Query 72319 TTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATC 72378 || ||||| || |||||| | || | || || || || || ||||| |||| | | Sbjct 122418 TTCGAGATCAAAGCGCATTGCTTAAGTGTGTCGTAAATCCCTTCTATTGAATCACCAGCC 122359 Query 72379 AT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGT 72437 || ||||| ||||| || |||| || |||| ||||||||||| || ||||| || Sbjct 122358 ATTGTTAATAAGAAA-CATGAGGACAACTGAGGACGCCTAGTTCCCGCGTTGAATAAAGT 122300 Query 72438 AGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTC 72497 |||||||| || || ||||| || | ||||| || ||| |||||||| | || | Sbjct 122299 TGGAGAAGCATGAGTGAACCACTTCTGAGACATATAATCGTAAGTCTCAATGACAGAATT 122240 Query 72498 TATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAAC 72557 ||||| | || || || || || |||||||| || | ||| |||||||| || | Sbjct 122239 AATATCTTCTCCGTGAATCCCAACAGCAACACGCATCAATAGATGTTGAGGTCTCTCGGC 122180 Query 72558 GATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTT 72617 || || |||||| || || | || || ||||| || || ||||| ||||| Sbjct 122179 AATTTTCCCATTTATCTTTAAAAGATAAGAACGCTCCAACGTCTTGAAACCGAAATAAGA 122120 Query 72618 GTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTTTATCCTTATATTTGTTAAC 72677 | ||| || | | |||| ||| | || || |||||||| | || | Sbjct 122119 AAAGTCAAAATCCCTGTTATAAACAATTGCAGAGTTCAGTTTATCAGCGTTCTTCAGGAT 122060 Query 72678 TATATCCATGGTGATACTTGA--AATAATCGGAGAATGTTTCCCATTTTTAGGATTAACA 72735 ||||| ||| | ||| | || || || ||| || | || || Sbjct 122059 GATATC--GTGTGTTTCTTTACTTATCATTGGCATATGAACTCCTGTAATATTATGGCGG 122002 Query 72736 TAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTT 72795 ||||| ||||||| ||||| |||||| || || ||||||| || || | ||| Sbjct 122001 TAGTTATATAAATCATCCATTACTTCAGAGAAACTCTTCTTTGTTTGTTTATGCATGTTT 121942 Query 72796 GATACGGCTATTCTGGCGGCTAGAATGGCATAATCTGGATGTTGTGTAGTACAAG-TGGC 72854 || | ||| ||||| || |||| || |||||||| ||||| ||| || || | | || Sbjct 121941 GAAATGGCGATTCTTGCTGCTAATATAGCATAATCAGGATGAATTGTTGT-CATGTTAGC 121883 Query 72855 TGCTATTTCTGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTG 72914 ||| | ||||||||| ||| | || || || ||||||| ||| |||||||| | ||| || Sbjct 121882 TGCAACTTCTGCTGCAAGATTATCTAACTCAACCGTTGATACACCATTATACAGTCCCTG 121823 Query 72915 GATAACCTT 72923 |||||| || Sbjct 121822 GATAACTTT 121814 Score = 89.7 bits (98), Expect = 7e-13 Identities = 230/343 (67%), Gaps = 17/343 (5%) Strand=Plus/Minus Query 70827 TTTCGTACGTAGATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCAT 70886 ||| || | || |||||||| || ||||||| || | |||| |||| ||||||||| Sbjct 123679 TTTAGTTCTTAAGTAGTACATCCCCGTTTTTAATCCACGTTTCCAACCGTGAAAATGCAT 123620 Query 70887 ACTCGTTAGTTTGGAATAGC-TAGGATCGGCTATG----TGAATATTCATCGACTGACTT 70941 | | | ||| || || ||| | ||| |||| || | || || | Sbjct 123619 AG-----AACTACAAATTGCATATGATGGTCTAGCCACATGAAGGTTAAGGGATTGTGAT 123565 Query 70942 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGA-ATTTC 71000 ||||| ||||| || || | || |||||||| | || || ||||| ||| ||||| Sbjct 123564 TGATCAATGAAAGCACCACGATCAGCAGCCATCTCAATAATA-TCTTTCTGGGAGATTTC 123506 Query 71001 CCAAATAGTTTTATAAA-CTCGCTTAATATCTTCTGGAA---GGTTTGTATTCTGAATGG 71056 ||| | ||||||||||| ||| |||||||| | || | ||| |||| || || | Sbjct 123505 CCATACAGTTTTATAAAGCTC-TTTAATATCATTGGGTATTTCTTTTATATTTTGGATAG 123447 Query 71057 ATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTA 71116 ||||| ||| || || || ||| | | ||||| ||||||| || || ||| Sbjct 123446 ATCCATTATCAGCTATTATTTCATTCATTAGTTCTTCGGTCCATAAGTTAAGTTCAATTA 123387 Query 71117 AAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGA 71159 || || |||| ||||| ||||| || | ||| || || ||||| Sbjct 123386 AATCTTTAAGAAGATGTGGATTTACAATTTGGAAATCACCAGA 123344 >seq108 Length=97238 Score = 84.2 bits (92), Expect = 3e-11 Identities = 92/122 (75%), Gaps = 3/122 (2%) Strand=Plus/Plus Query 36476 ACCCAATTCCTTGACCTGAGTTAGTGATCTCCAATCCATGTTAGCGCTTCCTAAATAAAT 36535 ||||| ||| ||||| | ||| | |||| ||||||||||||| || || |||| || || Sbjct 87570 ACCCATTTCTTTGACTTCAGTCAATGATTTCCAATCCATGTTTGCACTACCTATGTAGAT 87629 Query 36536 ATGTGTATTATCAGATATCCAAAATTTTGTATGAAGAACTCCT---CCTAGGATATTTGT 36592 |||| | | ||| ||||||||||| ||||| | ||||||| || |||| | ||| Sbjct 87630 ATGTTTTTGGTCAACAATCCAAAATTTGGTATGTAAAACTCCTGAACCAAGGAGGTGTGT 87689 Query 36593 AA 36594 || Sbjct 87690 AA 87691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671099745404280