Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20papillosus_20[genbank_20GCA_5F000936265.1_202014-11- 13] 4,703 sequences; 60,447,969 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq3059 95.1 1e-14 seq4 86.0 5e-12 >seq3059 Length=2231 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || ||||||||||| || |||||||| | | ||| | | ||||| |||||||| || Sbjct 1626 GTTGACTCCTTTTGGATGTTGTAATCAGAGAGAGTTCTTCCATCCTCAAGCTGTTTTCCA 1567 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| |||| | ||| || || || || | ||||| || || ||| || ||| Sbjct 1566 GCAAAAATCAATCTTTGTTGGTCTGGTGGGATCCCCTCCTTATCTTGAATCTTGGATTTG 1507 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | | | ||| ||| ||| || ||| | ||||||||||| || || |||||| Sbjct 1506 ACATTGTCAATAGTGTCGGAAGGTTCTACTTCAAGAGTAATGGTTTTTCCAGTCAAAGTT 1447 Query 19025 TTGACAAAAATTTGCAT 19041 ||||| ||||| ||||| Sbjct 1446 TTGACGAAAATCTGCAT 1430 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || ||||||||||| || |||||||| | | ||| | | || || || ||||| || Sbjct 1398 GTTGACTCCTTTTGGATGTTGTAATCAGAGAGAGTTCTTCCATCTTCAAGTTGTTTTCCA 1339 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| |||| | ||| || ||||| || | ||||| || || ||| || ||| Sbjct 1338 GCAAAAATTAATCTTTGTTGATCTGGTGGGATCCCCTCCTTATCTTGAATCTTGGATTTG 1279 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | | | ||| ||| ||| || ||| | ||||||||||| || || |||||| Sbjct 1278 ACATTGTCAATAGTGTCGGAAGGTTCTACTTCAAGAGTAATGGTTTTTCCAGTCAAAGTT 1219 Query 19025 TTGACAAAAATTTGCAT 19041 ||||| ||||| ||||| Sbjct 1218 TTGACGAAAATCTGCAT 1202 >seq4 Length=926804 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || ||||||||||| || |||||||| | | ||| | | || || || ||||| || Sbjct 390698 GTTGACTCCTTTTGGATGTTGTAATCAGAGAGAGTTCTTCCATCTTCAAGTTGTTTTCCA 390639 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| |||| | ||| || ||||| || | || ||||| || ||| || ||| Sbjct 390638 GCAAAAATTAATCTTTGTTGATCTGGTGGGATTCCTTCTTTATCTTGAATCTTAGATTTG 390579 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | | | ||||| |||||| || | || |||||||| ||||| ||||| Sbjct 390578 ACATTGTCAATTGTATCAGAAGGCTCTACCTCAAGAGTGATGGTTTTGCCTGTCAAAGTC 390519 Query 19025 TTGACAAAAATTTGCAT 19041 || |||||||||||||| Sbjct 390518 TTAACAAAAATTTGCAT 390502 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414549037593982