Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20papillosus_20[genbank_20GCA_5F000936265.1_202014-11- 13] 4,703 sequences; 60,447,969 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq3059 95.1 8e-15 seq4 86.0 4e-12 >seq3059 Length=2231 Score = 95.1 bits (104), Expect = 8e-15 Identities = 151/213 (71%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGT-CATC 33219 |||||||| | || ||||| ||||| || ||||||||||| | ||||| | |||| Sbjct 270 ACCAAATGAAGGGTTGACTCCTTTTGGATGTTGTAATCAGAGA----GAGTTCTTCCATC 215 Query 33220 --CAA-TTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC 33276 ||| ||| |||||| ||| ||||| | ||| ||||| | || || |||||||| || Sbjct 214 TTCAAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGGTCTGGTGGAATTCCTTCTTTGTC 155 Query 33277 GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGT 33336 |||| ||| || | | ||| |||||| |||| || || ||||| || || Sbjct 154 TTGAATCTTGGATTTGACATTGTCAATAGTGTCGGAAGGTTCTACCTCAAGAGTAATGGT 95 Query 33337 TTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||||| || | ||| || ||||| || ||||| Sbjct 94 CTTTCCAGTTAAAGTCTTGACGAAGATCTGCAT 62 Score = 95.1 bits (104), Expect = 8e-15 Identities = 151/213 (71%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGT-CATC 33219 |||||||| | || ||||| ||||| || ||||||||||| | ||||| | |||| Sbjct 1410 ACCAAATGAAGAGTTGACTCCTTTTGGATGTTGTAATCAGAGA----GAGTTCTTCCATC 1355 Query 33220 --CAA-TTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC 33276 ||| ||| |||||| ||| ||||| | ||| || || | || || || || || || Sbjct 1354 TTCAAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGATCTGGTGGGATCCCCTCCTTATC 1295 Query 33277 GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGT 33336 |||| ||| || | | ||| |||||| |||| || || ||||| || || Sbjct 1294 TTGAATCTTGGATTTGACATTGTCAATAGTGTCGGAAGGTTCTACTTCAAGAGTAATGGT 1235 Query 33337 TTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 |||||| || | |||||| |||||||| ||||| Sbjct 1234 TTTTCCAGTCAAAGTTTTGACGAAAATCTGCAT 1202 Score = 89.7 bits (98), Expect = 3e-13 Identities = 149/213 (70%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGT-CATC 33219 |||||||| | || ||||| ||||| || ||||||||||| | ||||| | |||| Sbjct 1638 ACCAAATGAAGAGTTGACTCCTTTTGGATGTTGTAATCAGAGA----GAGTTCTTCCATC 1583 Query 33220 C---AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC 33276 | | || |||||| ||| || || | ||| ||||| | || || || || || || Sbjct 1582 CTCAAGCTGTTTTCCAGCAAAAATCAATCTTTGTTGGTCTGGTGGGATCCCCTCCTTATC 1523 Query 33277 GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGT 33336 |||| ||| || | | ||| |||||| |||| || || ||||| || || Sbjct 1522 TTGAATCTTGGATTTGACATTGTCAATAGTGTCGGAAGGTTCTACTTCAAGAGTAATGGT 1463 Query 33337 TTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 |||||| || | |||||| |||||||| ||||| Sbjct 1462 TTTTCCAGTCAAAGTTTTGACGAAAATCTGCAT 1430 >seq4 Length=926804 Score = 86.0 bits (94), Expect = 4e-12 Identities = 152/218 (70%), Gaps = 8/218 (4%) Strand=Plus/Minus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGT-CATC 33219 |||||||| | || ||||| ||||| || ||||||||||| | ||||| | |||| Sbjct 390710 ACCAAATGAAGGGTTGACTCCTTTTGGATGTTGTAATCAGAGA----GAGTTCTTCCATC 390655 Query 33220 --CAA-TTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC 33276 ||| ||| |||||| ||| ||||| | ||| || || | || || |||||||| || Sbjct 390654 TTCAAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGATCTGGTGGGATTCCTTCTTTATC 390595 Query 33277 GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGT 33336 |||| ||| || | | ||| || || || | || || ||||| || || Sbjct 390594 TTGAATCTTAGATTTGACATTGTCAATTGTATCAGAAGGCTCTACCTCAAGAGTGATGGT 390535 Query 33337 TTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTTTA 33374 ||| || || | ||| || || |||||||||||| ||| Sbjct 390534 TTTGCCTGTCAAAGTCTTAACAAAAATTTGCATGGTTA 390497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318759328365294