Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20papillosus_20[genbank_20GCA_5F000936265.1_202014-11- 13] 4,703 sequences; 60,447,969 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq3059 93.3 3e-14 seq4 91.5 1e-13 >seq3059 Length=2231 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 |||||||| || || ||| |||||||||||||||||| | | |||| || Sbjct 1182 ACCAAATGAAGAGTTGACTCCTTTTGAATATTATAATCGGAAAGAGTTCTTCCATCTTCA 1123 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 | ||||||||| ||||| ||||| | ||| ||||| | || | ||||| || ||| | Sbjct 1122 AGTTGTTTTCCAGCAAAAATCAATCTTTGTTGGTCTGGTGGGATCCCTTCCTTGTCTTGA 1063 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 ||||| ||||| || | | || || | || || || || | ||||| || || Sbjct 1062 ATTTTCGACTTGACATTATCGATGGTGTCAGAAGGTTCTACCTCAAGAGTAATGGTCTTT 1003 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || ||||||||||| || || || ||||| Sbjct 1002 CCAGTTAAAGTCTTGACGAAGATCTGCAT 974 >seq4 Length=926804 Score = 91.5 bits (100), Expect = 1e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024 |||| || | ||||||||| ||||| || || | ||| || || | || | ||||||| Sbjct 390658 CATCTTCAAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGATCTGGTGGGATTCCTTCTT 390599 Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084 ||||| ||| || |||||| | ||| ||||| | ||||| || || | || | Sbjct 390598 TATCTTGAATCTTAGATTTGACATTGTCAATTGTATCAGAAGGCTCTACCTCAAGAGTGA 390539 Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 | ||||| || || |||||||| ||||| ||||||||| Sbjct 390538 TGGTTTTGCCTGTCAAAGTCTTAACAAAAATTTGCATG 390501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354757264924044